Gene Expression Profiling Concept

subject area of

• 21-Gene Assay to Inform Chemotherapy Benefit in Node-Positive Breast Cancer  Journal Articles
• Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD  Journal Articles
• Lactobacillus rhamnosusCNCM I-3690 and the commensal bacteriumFaecalibacterium prausnitziiA2-165 exhibit similar protective effects to induced barrier hyper-permeability in mice  Journal Articles
• RNA‐sequencing profiles hippocampal gene expression in a validated model of cancer‐induced depression  Journal Articles
• A Combination of Chemotherapy and Oncolytic Virotherapy Sensitizes Colorectal Adenocarcinoma to Immune Checkpoint Inhibitors in a cDC1-Dependent Manner  Journal Articles
• A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches  Journal Articles
• A FLEXIBLE NONPARAMETRIC APPROACH TO FIND CANDIDATE GENES ASSOCIATED WITH DISEASE IN MICROARRAY EXPERIMENTS  Journal Articles
• A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer  Journal Articles
• A Genomic Score Prognostic of Outcome in Trauma Patients  Journal Articles
• A Global Analysis of Protein Expression Profiles in Sinorhizobium meliloti: Discovery of New Genes for Nodule Occupancy and Stress Adaptation  Journal Articles
• A Multivariate Growth Curve Model for Ranking Genes in Replicated Time Course Microarray Data  Journal Articles
• A Pseudo-EM Algorithm for Clustering Incomplete Longitudinal Data  Journal Articles
• A Review of Physical Activity and Circulating miRNA Expression: Implications in Cancer Risk and Progression  Journal Articles
• A Stereoselective Hydroxylation Step of Alkaloid Biosynthesis by a Unique Cytochrome P450 in Catharanthus roseus  Journal Articles
• A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease  Journal Articles
• A comprehensive guide to dynamic analysis of microbial gene expression using the 3D-printed PFIbox and a fluorescent reporter library  Journal Articles
• A comprehensive library of fluorescent transcriptional reporters for Escherichia coli  Journal Articles
• A four gene signature of chromosome instability (CIN4) predicts for benefit from taxanes in the NCIC-CTG MA21 clinical trial  Journal Articles
• A four gene signature predicts benefit from anthracyclines: evidence from the BR9601 and MA.5 clinical trials  Journal Articles
• A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells  Journal Articles
• A novel microbe-based treatment that attenuates the inflammatory profile in a mouse model of allergic airway disease  Journal Articles
• A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach  Journal Articles
• A role for GPx3 in activity of normal and leukemia stem cells  Journal Articles
• A target based approach identifies genomic predictors of breast cancer patient response to chemotherapy  Journal Articles
• A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis  Journal Articles
• Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates  Journal Articles
• Adaptive Modifications of Muscle Phenotype in High-Altitude Deer Mice Are Associated with Evolved Changes in Gene Regulation  Journal Articles
• Adaptive modelling of gene regulatory network using Bayesian information criterion‐guided sparse regression approach  Journal Articles
• Adjuvant Chemotherapy Guided by a 21-Gene Expression Assay in Breast Cancer  Journal Articles
• Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces  Journal Articles
• Algorithms for prediction of the Oncotype DX recurrence score using clinicopathologic data: a review and comparison using an independent dataset  Journal Articles
• Altered DNA methylation is associated with aberrant gene expression in parenchymal but not airway fibroblasts isolated from individuals with COPD  Journal Articles
• Alternative expression analysis by RNA sequencing.  Journal Articles
• An algorithm to discover gene signatures with predictive potential  Journal Articles
• An atypical proprotein convertase in Giardia lamblia differentiation  Journal Articles
• Analysis of Beta-Cell Gene Expression Reveals Inflammatory Signaling and Evidence of Dedifferentiation following Human Islet Isolation and Culture  Journal Articles
• Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome.  Journal Articles
• Analysis of factorial time-course microarrays with application to a clinical study of burn injury  Journal Articles
• Analysis of the Human Fetal Liver Hematopoietic Microenvironment  Journal Articles
• Analysis of the susceptibility of lung cancer patients to SARS-CoV-2 infection  Journal Articles
• Ano1 is a better marker than c-Kit for transcript analysis of single interstitial cells of Cajal in culture  Journal Articles
• Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli  Journal Articles
• Apoptosis is signalled early by low doses of ionising radiation in a radiation-induced bystander effect  Journal Articles
• Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.  Journal Articles
• Assessment of biochemical recurrence of prostate cancer (Review)  Journal Articles
• Asymmetric segregation and self-renewal of hematopoietic stem and progenitor cells with endocytic Ap2a2  Journal Articles
• BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species  Journal Articles
• Behavioral and hypothalamic transcriptome analyses reveal sex-specific responses to phenanthrene exposure in the fathead minnow (Pimephales promelas)  Journal Articles
• Berberine Prevents Disease Progression of Nonalcoholic Steatohepatitis through Modulating Multiple Pathways  Journal Articles
• Biomarkers of browning of white adipose tissue and their regulation during exercise- and diet-induced weight loss,  Journal Articles
• Bone marrow cells from patients with Shwachman‐Diamond syndrome abnormally express genes involved in ribosome biogenesis and RNA processing  Journal Articles
• C. elegans electrotaxis behavior is modulated by heat shock response and unfolded protein response signaling pathways  Journal Articles
• COVID‐19 severity gradient differentially dysregulates clinically relevant drug processing genes in nasopharyngeal swab samples  Journal Articles
• CYB5D2 enhances HeLa cells survival of etoposide-induced cytotoxicity  Journal Articles
• Cancer phenomics: RET and PTEN as illustrative models  Journal Articles
• Cell Growth Inhibition upon Deletion of Four Toxin-Antitoxin Loci from the Megaplasmids of Sinorhizobium meliloti  Journal Articles
• Cell Wall Hydrolases Affect Germination, Vegetative Growth, and Sporulation in Streptomyces coelicolor  Journal Articles
• Cell of Origin in AML: Susceptibility to MN1-Induced Transformation Is Regulated by the MEIS1/AbdB-like HOX Protein Complex  Journal Articles
• Cellular Markers of Muscle Atrophy in Chronic Obstructive Pulmonary Disease  Journal Articles
• Cellular processes of v-Src transformation revealed by gene profiling of primary cells - Implications for human cancer  Journal Articles
• Changes in the transcriptome of abdominal subcutaneous adipose tissue in response to short-term overfeeding in lean and obese men  Journal Articles
• Characteristics of α2,3‐sialyl N‐glycosylated PSA as a biomarker for clinically significant prostate cancer in men with elevated PSA level  Journal Articles
• Characterizing Transcriptional Networks in Male Rainbow Darter (Etheostoma caeruleum) that Regulate Testis Development over a Complete Reproductive Cycle  Journal Articles
• Charting the transcriptomic landscape of primary and metastatic cancers in relation to their origin and target normal tissues.  Journal Articles
• Chemical Genomic Approaches to Study Model Microbes  Journal Articles
• Childhood Medulloblastoma: An Overview  Chapters
• Chlamydiae Host Cell Interactions Revealed Using DNA Microarrays  Journal Articles
• Claudin-Low Breast Cancer; Clinical & Pathological Characteristics  Journal Articles
• Clinical and Genomic Risk to Guide the Use of Adjuvant Therapy for Breast Cancer  Journal Articles
• Coagulation/Complement Activation and Cerebral Hypoperfusion in Relapsing-Remitting Multiple Sclerosis  Journal Articles
• Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress  Journal Articles
• Coexpression of epidermal growth factor receptor with related factors is associated with a poor prognosis in non-small-cell lung cancer  Journal Articles
• Comparative analysis of syngeneic mouse models of high-grade serous ovarian cancer  Journal Articles
• Comparative transcriptome analysis ofAgrobacterium tumefaciensin response to plant signal salicylic acid, indole-3-acetic acid and γ-amino butyric acid reveals signalling cross-talk andAgrobacterium-plant co-evolution  Journal Articles
• Comparison of Hydrostatic Filtration Dialysis with Ultracentrifugation Methods for the Identification and Proteomic Profiling of Urinary Extracellular Vesicles  Journal Articles
• Comparison of Tolerated and Rejected Islet Grafts: A Gene Expression Study  Journal Articles
• Comparison of longitudinal leukocyte gene expression after burn injury or trauma-hemorrhage in mice  Journal Articles
• Comparison of mice born after intracytoplasmic sperm injection with in vitro fertilization and natural mating  Journal Articles
• Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems  Journal Articles
• Complete genomic landscape of a recurring sporadic parathyroid carcinoma  Journal Articles
• Comprehensive Analysis of Gene-Environmental Interactions with Temporal Gene Expression Profiles in Pseudomonas aeruginosa  Journal Articles
• Comprehensive microRNA expression profiling of the hematopoietic hierarchy  Journal Articles
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Journal Articles
• Control of hydroxyproline catabolism in Sinorhizobium meliloti  Journal Articles
• Cross-species transcriptomic analysis elucidates constitutive aryl hydrocarbon receptor activity.  Journal Articles
• Cross‐species discovery of syncretic drug combinations that potentiate the antifungal fluconazole  Journal Articles
• Crp Is a Global Regulator of Antibiotic Production in Streptomyces  Journal Articles
• Culture and Molecular Profiling of the Respiratory Tract Microbiota  Journal Articles
• Current challenges and future perspectives of radiotherapy for locally advanced breast cancer  Journal Articles
• Cyclooxygenase-2 protein levels are independent of epidermal growth factor receptor expression or activation in operable non-small cell lung cancer  Journal Articles
• Cytogenetic Prognostication Within Medulloblastoma Subgroups  Journal Articles
• Data mining of gene expression changes in Alzheimer brain  Journal Articles
• Deciphering the role of SPL12 and AGL6 from a genetic module that functions in nodulation and root regeneration in Medicago sativa  Journal Articles
• Defining a 0.5-Mb Region of Genomic Gain on Chromosome 6p22 in Bladder Cancer by Quantitative-Multiplex Polymerase Chain Reaction  Journal Articles
• Delineation of Two Clinically and Molecularly Distinct Subgroups of Posterior Fossa Ependymoma  Journal Articles
• Deptor transcriptionally regulates endoplasmic reticulum homeostasis in multiple myeloma cells  Journal Articles
• Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species  Journal Articles
• Differential display polymerase chain reaction reveals increased expression of striatal rat glia-derived nexin following chronic clozapine treatment  Journal Articles
• Differential expression of ferritin genes in response to abiotic stresses and hormones in pear (Pyrus pyrifolia)  Journal Articles
• Differential gene expression profiling of short and long term denervated muscle  Journal Articles
• Differential induction of innate anti-viral responses by TLR ligands against Herpes simplex virus, type 2, infection in primary genital epithelium of women  Journal Articles
• Direct, Electronic MicroRNA Detection for the Rapid Determination of Differential Expression Profiles  Journal Articles
• Distinguishing Between Mouse and Human Pluripotent Stem Cell Regulation: The Best Laid Plans of Mice and Men  Journal Articles
• Donor Graft MicroRNAs: A Newly Identified Player in the Development of New-onset Diabetes After Liver Transplantation  Journal Articles
• Drug Repurposing and Personalized Treatment Strategies for Bipolar Disorder Using Transcriptomic  Journal Articles
• Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization  Journal Articles
• EB1 Levels Are Elevated in Ascorbic Acid (AA)-stimulated Osteoblasts and Mediate Cell-Cell Adhesion-induced Osteoblast Differentiation  Journal Articles
• EBV transformation and cell culturing destabilizes DNA methylation in human lymphoblastoid cell lines  Journal Articles
• ERM is required for transcriptional control of the spermatogonial stem cell niche  Journal Articles
• Effects in the use of a genetically engineered strain ofLactococcus lactisdelivering in situ IL-10 as a therapy to treat low-grade colon inflammation  Journal Articles
• Effects of Bacterial ACC Deaminase onBrassica napusGene Expression  Journal Articles
• Effects of mesalamine (5-aminosalicylic acid) on bacterial gene expression  Journal Articles
• Endoplasmic reticulum stress inhibition attenuates hypertensive chronic kidney disease through reduction in proteinuria  Journal Articles
• Enhanced expression of Organic Cation Transporters in bronchial epithelial cell layers following insults associated with asthma – Impact on salbutamol transport  Journal Articles
• Environmental Regulation of Pseudomonas aeruginosa PAO1 Las and Rhl Quorum-Sensing Systems  Journal Articles
• Epithelial-Restricted Gene Profile of Primary Cultures from Human Prostate Tumors: A Molecular Approach to Predict Clinical Behavior of Prostate Cancer  Journal Articles
• Estimating Number of Clusters Based on a General Similarity Matrix with Application to Microarray Data  Journal Articles
• Estimation of weighted log partial area under the ROC curve and its application to MicroRNA expression data  Journal Articles
• Estrogen independent gene expression defines clinically relevant subgroups of estrogen receptor positive breast cancer  Journal Articles
• Estrogen-Dependent Dynamic Profile of eNOS-DNA Associations in Prostate Cancer  Journal Articles
• Estrogen-responsive gene networks in the teleost liver: What are the key molecular indicators?  Journal Articles
• Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.  Journal Articles
• Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression  Journal Articles
• Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation  Journal Articles
• Evolution of the Largest Mammalian Genome  Journal Articles
• Evolution of the nuclear-encoded cytochrome oxidase subunits in vertebrates  Journal Articles
• Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage  Journal Articles
• Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap  Journal Articles
• Expression profiling of familial breast cancers demonstrates higher expression of FGFR2 in BRCA2-associated tumors  Journal Articles
• Expression profiling of human milk derived exosomal microRNAs and their targets in HIV-1 infected mothers  Journal Articles
• Extracellular Signal-Regulated Kinase 2 and CHOP Restrict the Expression of the Growth Arrest-Specific p20K Lipocalin Gene to G₀  Journal Articles
• Follistatin promotes adipocyte differentiation, browning, and energy metabolism  Journal Articles
• Forward and reverse genetics to identify genes involved in the age‐related resistance response in Arabidopsis thaliana  Journal Articles
• Functional Divergence in the Arabidopsis  -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States  Journal Articles
• Gamma-secretase inhibitors target tumor-initiating cells in a mouse model of ERBB2 breast cancer  Journal Articles
• Gene Expression Profiles for the Identification of Prevalent Atrial Fibrillation  Conferences
• Gene Expression Profiling of Human Cancers  Conferences
• Gene Expression and Enzyme Activity of Mitochondrial Proteins in Irradiated Rainbow Trout (Oncorhynchus Mykiss, Walbaum) TissuesIn Vitro  Journal Articles
• Gene Expression, Fiber Type, and Strength Are Similar Between Left and Right Legs in Older Adults  Journal Articles
• Gene Regulation Divergence Is a Major Contributor to the Evolution of Dobzhansky–Muller Incompatibilities between Species of Drosophila  Journal Articles
• Gene expression analysis in asthma using a targeted multiplex array  Journal Articles
• Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue  Journal Articles
• Gene expression changes during Giardia–host cell interactions in serum-free medium  Journal Articles
• Gene expression profiling in human skeletal muscle during recovery from eccentric exercise  Journal Articles
• Gene expression profiling in the Cynomolgus macaque Macaca fascicularis shows variation within the normal birth range  Journal Articles
• Gene expression profiling of PBMCs from Holstein and Jersey cows sub-clinically infected with Mycobacterium avium ssp. paratuberculosis  Journal Articles
• Gene expression using microarrays in transplant recipients at risk of EBV lymphoproliferation after organ transplantation: Preliminary proof‐of‐concept  Journal Articles
• Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression  Journal Articles
• Gene-Metabolite Expression in Blood Can Discriminate Allergen-Induced Isolated Early from Dual Asthmatic Responses  Journal Articles
• Genetic Changes Accompanying the Evolution of Host Specialization in Drosophila sechellia  Journal Articles
• Genetic Determinants of “Cognitive Impairment, No Dementia”  Journal Articles
• Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge  Journal Articles
• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria  Journal Articles
• Genome-Wide Temporal Gene Expression Reveals a Post-Reproductive Shift in the Nematode Caenorhabditis briggsae.  Journal Articles
• Genome-wide association and transcriptome studies identify target genes and risk loci for breast cancer  Journal Articles
• Genome-wide comparisons of gene expression in adult versus elderly burn patients  Journal Articles
• Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses  Journal Articles
• Genome-wide germline correlates of the epigenetic landscape of prostate cancer  Journal Articles
• Genomic Profiling of Iron-Responsive Genes in Salmonella enterica Serovar Typhimurium by High-Throughput Screening of a Random Promoter Library  Journal Articles
• Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum  Journal Articles
• Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress  Journal Articles
• Genomic investigations of unexplained acute hepatitis in children  Journal Articles
• Gill membrane remodeling with soft-water acclimation in zebrafish (Danio rerio)  Journal Articles
• Global Gene Transcriptome Analysis in Vaccinated Cattle Revealed a Dominant Role of IL-22 for Protection against Bovine Tuberculosis  Journal Articles
• Global and targeted gene expression and protein content in skeletal muscle of young men following short-term creatine monohydrate supplementation  Journal Articles
• Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933  Journal Articles
• Global transcriptome analysis identifies weight regain-induced activation of adaptive immune responses in white adipose tissue of mice  Journal Articles
• Have advanced research technologies made real impact on respiratory medicine?  Journal Articles
• Hedgehog modulates cell cycle regulators in stem cells to control hematopoietic regeneration  Journal Articles
• Hepatic gene expression profiling in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil  Journal Articles
• Hierarchical and Ontogenic Positions Serve to Define the Molecular Basis of Human Hematopoietic Stem Cell Behavior  Journal Articles
• High Interleukin-15 Expression Characterizes Childhood Acute Lymphoblastic Leukemia With Involvement of the CNS  Journal Articles
• High responders to resistance exercise training demonstrate differential regulation of skeletal muscle microRNA expression  Journal Articles
• High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)  Journal Articles
• High-throughput fitness screening and transcriptomics identify a role for a type IV secretion system in the pathogenesis of Crohn’s disease-associated Escherichia coli  Journal Articles
• Histone Modification Profiling in Normal and Transformed Human Embryonic Stem Cells Using Micro Chromatin Immunoprecipitation, Scalable to Genome-Wide Microarray Analyses  Journal Articles
• Hormone Receptor and ERBB2 Status in Gene Expression Profiles of Human Breast Tumor Samples  Journal Articles
• Host-specific differences in the physiology of acid secretion related to prostaglandins may play a role in gastric inflammation and injury  Journal Articles
• How do women trade-off benefits and risks in chemotherapy treatment decisions based on gene expression profiling for early-stage breast cancer? A discrete choice experiment  Journal Articles
• Human Milk Oligosaccharides Protect against Necrotizing Enterocolitis by Activating Intestinal Cell Differentiation  Journal Articles
• Human Tissue Kallikreins: From Gene Structure to Function and Clinical Applications  Chapters
• Human transcriptome array for high-throughput clinical studies  Journal Articles
• INVITED REVIEW: Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances  Journal Articles
• Identification and evaluation of network modules for the prognosis of basal-like breast cancer  Journal Articles
• Identification of Bacterial Proteins Mediating the Interactions Between Pseudomonas putida UW4 and Brassica napus (Canola)  Journal Articles
• Identification of cells of leukemic stem cell origin with non-canonical regenerative properties  Journal Articles
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Journal Articles
• Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance  Journal Articles
• Identifying transcriptomic indicators of tertiary treated municipal effluent in longnose dace (Rhinichthys cataractae) caged under semi-controlled conditions in experimental raceways  Journal Articles
• Immunological mechanisms to establish embryo tolerance in early bovine pregnancy  Journal Articles
• Impaired alternative macrophage differentiation of peripheral blood mononuclear cells from obese subjects  Journal Articles
• In Vivo Generation of Neural Tumors from Neoplastic Pluripotent Stem Cells Models Early Human Pediatric Brain Tumor Formation  Journal Articles
• In-depth characterization of the microRNA transcriptome in a leukemia progression model.  Journal Articles
• Inability of Human Induced Pluripotent Stem Cell-Hematopoietic Derivatives to Downregulate MicroRNAs In Vivo Reveals a Block in Xenograft Hematopoietic Regeneration  Journal Articles
• Increased Efficiency of Genetic Profiling Through Quantity and Quality Assessment of Fluorescently Labeled Oligonucleotide Primers  Journal Articles
• Infectious complications after heart transplantation in patients screened with gene expression profiling  Journal Articles
• Infectious salmon anaemia virus (ISAV) isolates induce distinct gene expression responses in the Atlantic salmon (Salmo salar) macrophage/dendritic-like cell line TO, assessed using genomic techniques  Journal Articles
• Influence of the Tissue Microenvironment on Toll-Like Receptor Expression by CD11c⁺Antigen-Presenting Cells Isolated from Mucosal Tissues  Journal Articles
• Inhibition of Bacterial Biofilm Formation and Swarming Motility by a Small Synthetic Cationic Peptide  Journal Articles
• Inhibition of endogenous MTF-1 signaling in zebrafish embryos identifies novel roles for MTF-1 in development  Journal Articles
• Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models  Journal Articles
• Inter-replicon Gene Flow Contributes to Transcriptional Integration in the Sinorhizobium meliloti Multipartite Genome  Journal Articles
• Interferon-Mediated Immunopathological Events Are Associated with Atypical Innate and Adaptive Immune Responses in Patients with Severe Acute Respiratory Syndrome  Journal Articles
• Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity  Journal Articles
• Interpreting the Host-Pathogen Dialogue Through Microarrays  Journal Articles
• Intertumoral Heterogeneity within Medulloblastoma Subgroups  Journal Articles
• Investigating the Link between Molecular Subtypes of Glioblastoma, Epithelial-Mesenchymal Transition, and CD133 Cell Surface Protein  Journal Articles
• Investigating the Role of Protein UnkG from the Pseudomonas putida UW4 in the Ability of the Bacterium to Facilitate Plant Growth  Journal Articles
• JunD/AP-1 Antagonizes the Induction of DAPK1 To Promote the Survival of v-Src-Transformed Cells  Journal Articles
• Just-in-time transcription program in metabolic pathways  Journal Articles
• K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas  Journal Articles
• LINC00174 is a novel prognostic factor in thymic epithelial tumors involved in cell migration and lipid metabolism  Journal Articles
• Leukaemia‐related gene expression in bone marrow cells from patients with the preleukaemic disorder Shwachman–Diamond syndrome  Journal Articles
• Leukemia targeting ligands isolated from phage display peptide libraries  Journal Articles
• Limb Immobilization Induces a Coordinate Down-Regulation of Mitochondrial and Other Metabolic Pathways in Men and Women  Journal Articles
• Lineage-Specific Differentiation Is Influenced by State of Human Pluripotency  Journal Articles
• Long Non-coding MIR205HG Depletes Hsa-miR-590-3p Leading to Unrestrained Proliferation in Head and Neck Squamous Cell Carcinoma  Journal Articles
• Long Serial Analysis of Gene Expression for Gene Discovery and Transcriptome Profiling in the Widespread Marine Coccolithophore Emiliania huxleyi  Journal Articles
• Lunatic Fringe Deficiency Cooperates with the Met/Caveolin Gene Amplicon to Induce Basal-like Breast Cancer  Journal Articles
• Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome  Journal Articles
• Massage Therapy Attenuates Inflammatory Signaling After Exercise-Induced Muscle Damage  Journal Articles
• Menin Links the Stress Response to Genome Stability in Drosophila melanogaster  Journal Articles
• Meropenem potentiation of aminoglycoside activity against Pseudomonas aeruginosa: involvement of the MexXY-OprM multidrug efflux system  Journal Articles
• Metabolic and co-expression network-based analyses associated with nitrate response in rice  Journal Articles
• Metatranscriptomic RNA-Seq Data Analysis of Virus-Infected Host Cells  Journal Articles
• Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection.  Journal Articles
• MiR-204 down-regulation elicited perturbation of a gene target signature common to human cholangiocarcinoma and gastric cancer  Journal Articles
• MicroRNA expression profiling of thymic epithelial tumors  Journal Articles
• Microarray Meta-Analysis Identifies Acute Lung Injury Biomarkers in Donor Lungs That Predict Development of Primary Graft Failure in Recipients  Journal Articles
• Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas  Journal Articles
• Model-based clustering of microarray expression data via latent Gaussian mixture models  Journal Articles
• Modulation of the TLR-Mediated Inflammatory Response by the Endogenous Human Host Defense Peptide LL-37  Journal Articles
• Molecular Genetic Analysis of the Idd4 Locus Implicates the IFN Response in Type 1 Diabetes Susceptibility in Nonobese Diabetic Mice  Journal Articles
• Molecular Hallmarks of Multiparametric Magnetic Resonance Imaging Visibility in Prostate Cancer  Journal Articles
• Molecular cloning and functional expression of rabbit α2-antiplasmin  Journal Articles
• Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila  Journal Articles
• Mouse models of cystathionine β‐synthase deficiency reveal significant threshold effects of hyperhomocysteinemia  Journal Articles
• Multi-level cellular and functional annotation of single-cell transcriptomes using scPipeline  Journal Articles
• Multidisciplinary approaches for studying rhizobium–legume symbioses  Journal Articles
• Multiple Imprinted and Stemness Genes Provide a Link between Normal and Tumor Progenitor Cells of the Developing Human Kidney  Journal Articles
• Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population  Journal Articles
• Multiple genes in human 20q13 chromosomal region are involved in an advanced prostate cancer xenograft.  Journal Articles
• NLRP3 knockout enhances immune infiltration and inflammatory responses and improves survival in a burn sepsis model  Journal Articles
• Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid  Journal Articles
• Neonates harbour highly active γδ T cells with selective impairments in preterm infants  Journal Articles
• New Tools for Investigating the Comparative Biology of Caenorhabditis  briggsae and C. elegans  Journal Articles
• Next-generation tag sequencing for cancer gene expression profiling  Journal Articles
• Nitric oxide-dependent changes in Schistosoma mansoni gene expression  Journal Articles
• Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress  Journal Articles
• Nonhematopoietic cells represent a more rational target of in vivo hedgehog signaling affecting normal or acute myeloid leukemia progenitors  Journal Articles
• Notch-HES1 signaling axis controls hemato-endothelial fate decisions of human embryonic and induced pluripotent stem cells  Journal Articles
• Novel Blood-based Transcriptional Biomarker Panels Predict the Late-Phase Asthmatic Response  Journal Articles
• Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains  Journal Articles
• Omics Underpins Novel Clues on VDR Chemoprevention Target in Breast Cancer  Journal Articles
• Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria  Journal Articles
• Overlap Chronic Placental Inflammation Is Associated with a Unique Gene Expression Pattern  Journal Articles
• Pan-urologic cancer genomic subtypes that transcend tissue of origin  Journal Articles
• Pattern specification and immune response transcriptional signatures of pericardial and subcutaneous adipose tissue.  Journal Articles
• Peripheral Blood MCEMP1 Gene Expression as a Biomarker for Stroke Prognosis  Journal Articles
• Peripheral Blood Gene Expression Changes during Allergen Inhalation Challenge in Atopic Asthmatic Individuals  Journal Articles
• Persistent expression of the ATP-binding cassette transporter, Abcg2, identifies cardiac SP cells in the developing and adult heart  Journal Articles
• Phenotypic Diversity Caused by Differential RpoS Activity among Environmental Escherichia coli Isolates  Journal Articles
• Phylogenetic and functional analyses of the cytochrome P450 family 4  Journal Articles
• Point/counterpoint: early-stage Hodgkin lymphoma and the role of radiation therapy.  Journal Articles
• Population-Based Study to Determine the Health System Costs of Using the 21-Gene Assay  Journal Articles
• Processing of Primary Brain Tumor Tissue for Stem Cell Assays and Flow Sorting  Journal Articles
• Profiling Schistosoma mansoni development using serial analysis of gene expression (SAGE)  Journal Articles
• Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing  Journal Articles
• Prognostic and predictive value of the 21-gene recurrence score assay in postmenopausal women with node-positive, oestrogen-receptor-positive breast cancer on chemotherapy: a retrospective analysis of a randomised trial  Journal Articles
• Prognostic value of the trichorhinophalangeal syndrome-1 (TRPS-1), a GATA family transcription factor, in early-stage breast cancer  Journal Articles
• Prospective Evaluation of the 21-Gene Recurrence Score Assay for Breast Cancer Decision-Making in Ontario  Journal Articles
• Prospective Evaluation of the Impact of the 21-Gene Recurrence Score Assay on Adjuvant Treatment Decisions for Women with Node-Positive Breast Cancer in Ontario, Canada  Journal Articles
• Prospective Validation of a 21-Gene Expression Assay in Breast Cancer  Journal Articles
• Protein expression analysis of drug-mediated hepatotoxicity in the Sprague-Dawley rat  Journal Articles
• Proteomic Profiling of Hepatic Endoplasmic Reticulum-associated Proteins in an Animal Model of Insulin Resistance and Metabolic Dyslipidemia  Journal Articles
• Proteomic analysis of common bean seed with storage protein deficiency reveals up-regulation of sulfur-rich proteins and starch and raffinose metabolic enzymes, and down-regulation of the secretory pathway  Conferences
• Proteomic profiling of intestinal prechylomicron transport vesicle (PCTV)-associated proteins in an animal model of insulin resistance (94 char)  Journal Articles
• Protumorigenic effects of mir-145 loss in malignant pleural mesothelioma  Journal Articles
• Pyrvinium Targets CD133 in Human Glioblastoma Brain Tumor–Initiating Cells  Journal Articles
• RETRACTED: Gene expression markers for Caenorhabditiselegans vulval cells  Journal Articles
• RNA-seq analysis of 2 closely related leukemia clones that differ in their self-renewal capacity  Journal Articles
• Rapid screening of microsatellite markers for polymorphisms using SYBR ^® Green I and a DNA sequencer  Journal Articles
• Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease  Journal Articles
• Recommendations from the European Commission Initiative on Breast Cancer for multigene testing to guide the use of adjuvant chemotherapy in patients with early breast cancer, hormone receptor positive, HER-2 negative  Journal Articles
• Regulation of xanthine dehydrogensase gene expression and uric acid production in human airway epithelial cells  Journal Articles
• Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice  Journal Articles
• Reliable detection of somatic mutations in solid tissues by laser-capture microdissection and low-input DNA sequencing  Journal Articles
• Resistance Exercise Reverses Aging in Human Skeletal Muscle  Journal Articles
• Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance.  Journal Articles
• Risk evaluation using gene expression screening to monitor for acute cellular rejection in heart transplant recipients  Journal Articles
• Role of Human Antigen R (HuR) in the Regulation of Pulmonary ACE2 Expression  Journal Articles
• SINGLE-CELL TRANSCRIPTOME ANALYSIS IN HEALTH AND DISEASE  Journal Articles
• Salmonella Pathogenicity Island 2 Is Expressed Prior to Penetrating the Intestine  Journal Articles
• Scriptaid enhances skeletal muscle insulin action and cardiac function in obese mice  Journal Articles
• Selecting Patients for Oncotype DX Testing Using Standard Clinicopathologic Information  Journal Articles
• Selection of Reference Genes for qPCR Analyses of Gene Expression in Ramie Leaves and Roots across Eleven Abiotic/Biotic Treatments  Journal Articles
• Sequential Analysis of α‐ and β‐Globin Gene Expression During Erythropoietic Differentiation from Primate Embryonic Stem Cells  Journal Articles
• Severe Injury Is Associated With Insulin Resistance, Endoplasmic Reticulum Stress Response, and Unfolded Protein Response  Journal Articles
• Single cell and tissue-transcriptomic analysis of murine bladders reveals age- and TNFα-dependent but microbiota-independent tertiary lymphoid tissue formation  Journal Articles
• Single-Species Microarrays and Comparative Transcriptomics  Journal Articles
• Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity  Journal Articles
• Smad7 alters cell fate decisions of human hematopoietic repopulating cells  Journal Articles
• Small Molecule Antagonists of the Wnt/Beta-Catenin Signaling Pathway Target Breast Tumor-Initiating Cells in a Her2/Neu Mouse Model of Breast Cancer  Journal Articles
• SomaticSF3B1Mutation in Myelodysplasia with Ring Sideroblasts  Journal Articles
• Specific Binding to Differentially Expressed Human Carcinoembryonic Antigen-Related Cell Adhesion Molecules Determines the Outcome of Neisseria gonorrhoeae Infections along the Female Reproductive Tract  Journal Articles
• Specific miRNA-G Protein-Coupled Receptor Networks Regulate Sox9a/Sox9b Activities to Promote Gonadal Rejuvenation in Zebrafish  Journal Articles
• Strategic Targeting of Essential Host-pathogen Interactions in Chlamydial Disease  Journal Articles
• Subgroup-Specific Prognostic Implications of TP53 Mutation in Medulloblastoma  Journal Articles
• Subinhibitory concentrations of tetracycline affect virulence gene expression in a multi-resistant Salmonella enterica subsp. enterica serovar Typhimurium DT104  Journal Articles
• Systemic FasL and TRAIL Neutralisation Reduce Leishmaniasis Induced Skin Ulceration  Journal Articles
• TDAG51 Is Induced by Homocysteine, Promotes Detachment-mediated Programmed Cell Death, and Contributes to the Development of Atherosclerosis in Hyperhomocysteinemia  Journal Articles
• TERT promoter mutations are highly recurrent in SHH subgroup medulloblastoma  Journal Articles
• TGFβ Programs Central Memory Differentiation inEx Vivo–Stimulated Human T Cells  Journal Articles
• Targeted genomic landscape of metastases compared to primary tumours in clear cell metastatic renal cell carcinoma  Journal Articles
• Targeted metabolite and transcript profiling for elucidating enzyme function: isolation of novel N‐methyltransferases from three benzylisoquinoline alkaloid‐producing species  Journal Articles
• Targeting prostate cancer with HTI‐286, a synthetic analog of the marine sponge product hemiasterlin  Journal Articles
• Tests for differential gene expression using weights in oligonucleotide microarray experiments  Journal Articles
• The Effects of Weak Genetic Perturbations on the Transcriptome of the Wing Imaginal Disc and Its Association With Wing Shape in Drosophila melanogaster  Journal Articles
• The Pea3 Ets transcription factor regulates differentiation of multipotent progenitor cells during mammary gland development  Journal Articles
• The Pel and Psl polysaccharides provide Pseudomonas aeruginosa structural redundancy within the biofilm matrix  Journal Articles
• The Transcriptional Response to Oxidative Stress during Vertebrate Development: Effects of tert-Butylhydroquinone and 2,3,7,8-Tetrachlorodibenzo-p-Dioxin  Journal Articles
• The Value of Personalizing Medicine: Medical Oncologists’ Views on Gene Expression Profiling in Breast Cancer Treatment  Journal Articles
• The chaplins: a family of hydrophobic cell-surface proteins involved in aerial mycelium formation inStreptomyces coelicolor  Journal Articles
• The complex resistomes of Paenibacillaceae reflect diverse antibiotic chemical ecologies  Journal Articles
• The dilution effect and the importance of selecting the right internal control genes for RT-qPCR: a paradigmatic approach in fetal sheep  Journal Articles
• The effects of 17-α-ethinylestradiol (EE2) on molecular signaling cascades in mummichog (Fundulus heteroclitus)  Journal Articles
• The effects of lymph node status on predicting outcome in ER+ /HER2- tamoxifen treated breast cancer patients using gene signatures  Journal Articles
• The gene associated with trichorhinophalangeal syndrome in humans is overexpressed in breast cancer  Journal Articles
• The identification of human pituitary adenoma-initiating cells  Journal Articles
• The importance of selecting the right internal control gene to study the effects of antenatal glucocorticoid administration in human placenta  Journal Articles
• The influence of gene expression profiling on decisional conflict in decision making for early-stage breast cancer chemotherapy  Journal Articles
• The microbiota and the gut-brain axis: insights from the temporal and spatial mucosal alterations during colonisation of the germfree mouse intestine  Journal Articles
• The post-genomic era: workshop on chromatin immunoprecipitation-related techniques  Journal Articles
• Therapy for relapsed multiple myeloma  Journal Articles
• Toxicogenomic Analysis of Mainstream Tobacco Smoke-Exposed Mice Reveals Repression of Plasminogen Activator Inhibitor-1 Gene in Heart  Journal Articles
• Transcriptional Profiling Implicates Novel Interactions between Abiotic Stress and Hormonal Responses in Thellungiella, a Close Relative of Arabidopsis    Journal Articles
• Transcriptional profiling and regulation of the extracellular matrix during muscle regeneration  Journal Articles
• Transcriptional profiling of primary endometrial epithelial cells following acute HIV‐1 exposure reveals gene signatures related to innate immunity  Journal Articles
• Transcriptional profiling of rat hypothalamus response to 2,3,7,8-tetrachlorodibenzo-ρ-dioxin.  Journal Articles
• Transcriptional profiling of rat white adipose tissue response to 2,3,7,8-tetrachlorodibenzo-ρ-dioxin.  Journal Articles
• Transcriptional response of vaginal epithelial cells to medroxyprogesterone acetate treatment results in decreased barrier integrity  Journal Articles
• Transcriptome Profiling and Functional Analysis ofAgrobacterium tumefaciensReveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved inAgrobacterium-Plant Interactions  Journal Articles
• Transcriptome analyses of the Giardia lamblia life cycle  Journal Articles
• Transcriptome analysis ofSchistosoma mansonilarval development using serial analysis of gene expression (SAGE)  Journal Articles
• Transcriptome and Secretome Analyses of the Wood Decay Fungus Wolfiporia cocos Support Alternative Mechanisms of Lignocellulose Conversion  Journal Articles
• Transcriptomic and proteomic analyses in bone tumor cells: Deciphering parathyroid hormone-related protein regulation of the cell cycle and apoptosis  Journal Articles
• Transcriptomic profiling of gamma ray induced mutants from the CGL1 human hybrid cell system reveals novel insights into the mechanisms of radiation-induced carcinogenesis  Journal Articles
• Treatment-induced cell cycle kinetics dictate tumor response to chemotherapy  Journal Articles
• Understanding Skeletal Muscle Adaptation to Exercise Training in Humans: Contributions from Microarray Studies  Journal Articles
• Urinary EGF and MCP-1 and risk of CKD after cardiac surgery  Journal Articles
• Use of differential fluorescence induction and optical trapping to isolate environmentally induced genes  Journal Articles
• VDR primary targets by genome-wide transcriptional profiling  Journal Articles
• VEGF-Mediated Induction of PRD1-BF1/Blimp1 Expression Sensitizes Tumor Vasculature to Oncolytic Virus Infection  Journal Articles
• Vitamin B6 prevents cognitive impairment in experimental pneumococcal meningitis  Journal Articles
• Wnt activation as a therapeutic strategy in medulloblastoma  Journal Articles
• cDNA Array Analysis of Altered Gene Expression in Human Endothelial Cells in Response toChlamydia pneumoniaeInfection  Journal Articles
• cDNA array reveals differential gene expression following chronic neuroleptic administration: implications of synapsin II in haloperidol treatment  Journal Articles
• miR-29c-3p is an Effective Biomarker of Abdominal Aortic Aneurysm in Patients Undergoing Elective Surgery  Journal Articles