Sequence Analysis, DNA Concept

subject area of

• Molecular characterization of the Pseudomonas aeruginosa serotype O5 (PAO1) B-band lipopolysaccharide gene cluster  Academic Article
• Sequence Note: Molecular Epidemiological Analysis of Human Immunodeficiency Virus Type 1 in Newfoundland, Canada  Academic Article
• Salmonella enterica Serovar Senftenberg Human Clinical Isolates Lacking SPI-1  Academic Article
• Torulaspora quercuum  sp. nov. andCandida pseudohumilis  sp. nov., novel yeasts from human and forest habitats  Academic Article
• A CGG-Repeat Expansion Mutation inZNF713Causes FRA7A: Association with Autistic Spectrum Disorder in two Families  Academic Article
• A Catalog of Reference Genomes from the Human Microbiome  Academic Article
• A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods  Academic Article
• A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis  Academic Article
• A draft genome of Yersinia pestis from victims of the Black Death  Academic Article
• A high-throughput sequencing test for diagnosing inherited bleeding, thrombotic, and platelet disorders  Academic Article
• A hotspot for the Drosophila gypsy retroelement in the ovo locus  Academic Article
• A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution  Academic Article
• A novel multisystem disease associated with recessive mutations in the tyrosyl-tRNA synthetase (YARS) gene  Academic Article
• A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution  Academic Article
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Academic Article
• A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)  Academic Article
• A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives  Academic Article
• A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia  Academic Article
• A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov.  Academic Article
• A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA  Academic Article
• A randomized phase II study of cediranib alone versus cediranib in combination with dasatinib in docetaxel resistant, castration resistant prostate cancer patients  Academic Article
• A role for GPx3 in activity of normal and leukemia stem cells  Academic Article
• A standardised method for interpreting the association between mutations and phenotypic drug resistance inMycobacterium tuberculosis  Academic Article
• Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback  Academic Article
• Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses  Academic Article
• Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity  Academic Article
• Altered DNA methylation is associated with aberrant gene expression in parenchymal but not airway fibroblasts isolated from individuals with COPD  Academic Article
• An Integrated Approach to Functional Genomics: Construction of a Novel Reporter Gene Fusion Library for Sinorhizobium meliloti  Academic Article
• An evaluation of genetic causes and environmental risks for bilateral optic atrophy  Academic Article
• An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli  Academic Article
• Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes  Academic Article
• Ancient DNA and the tropics: a rodent's tale  Academic Article
• Ancient Whole Genome Enrichment Using Baits Built from Modern DNA  Academic Article
• AppIndels.com server: a web-based tool for the identification of known taxon-specific conserved signature indels in genome sequences. Validation of its usefulness by predicting the taxonomic affiliation of >700 unclassified strains of Bacillus species  Academic Article
• Application of leftover sample material from waterborne protozoa monitoring for the molecular detection of Bacteroidales and fecal source tracking markers  Academic Article
• Assay of HIV gp41 amino acid sequence to identify baseline variation and mutation development in patients with virologic failure on enfuvirtide☆  Academic Article
• Assessing host-specificity of Escherichia coli using a supervised learning logic-regression-based analysis of single nucleotide polymorphisms in intergenic regions  Academic Article
• Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms  Academic Article
• Assigning sequences to species in the absence of large interspecific differences  Academic Article
• Assignment of bovine trophinin (TRO) to the q arm of the X chromosome by fluorescencein situhybridization  Academic Article
• BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species  Academic Article
• BRCA1, BRCA2 and breast cancer: a concise clinical review.  Academic Article
• Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit  Academic Article
• Balanced translocation t(3;18)(p13;q22.3) and points mutation in the ZNF407 gene detected in patients with both moderate non-syndromic intellectual disability and autism  Academic Article
• Beltrania sinensis sp. nov., an endophytic fungus from China and a key to species of the genus  Academic Article
• Bioinformatics of antimicrobial resistance in the age of molecular epidemiology  Academic Article
• CLONING AND CHARACTERIZATION OF AN mRNA ENCODING AN INSULIN RECEPTOR FROM THE HORNED SCARAB BEETLEOnthophagus nigriventris(COLEOPTERA: SCARABAEIDAE)  Academic Article
• Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling  Academic Article
• Carbapenem-resistant Gram-negative bacilli in Canada 2009-10: results from the Canadian Nosocomial Infection Surveillance Program (CNISP)  Academic Article
• Characterization of Streptococcus milleri Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis  Academic Article
• Characterization of Three Related Low-Temperature-Regulated cDNAs from Winter Brassica napus  Academic Article
• Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme  Academic Article
• Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase  Academic Article
• Characterization of a cryptic plasmid from Pseudomonas sp. and utilization of its temperature-sensitive derivatives for genetic manipulation  Academic Article
• Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003  Academic Article
• Characterization of the interferon regulatory factor 3-mediated antiviral response in a cell line deficient for IFN production  Academic Article
• Clinical Next-Generation Sequencing Pipeline Outperforms a Combined Approach Using Sanger Sequencing and Multiplex Ligation-Dependent Probe Amplification in Targeted Gene Panel Analysis  Academic Article
• Clinically relevant mutations in core metabolic genes confer antibiotic resistance  Academic Article
• Clonal Genotype of Geomyces destructans among Bats with White Nose Syndrome, New York, USA  Academic Article
• Cloning and Some Novel Characteristics of Mitochondrial Hsp70 from Chinese Hamster Cells  Academic Article
• Cloning and analysis of duplicated rfbM and rfbK genes involved in the formation of GDP-mannose in Escherichia coli O9:K30 and participation of rfb genes in the synthesis of the group I K30 capsular polysaccharide  Academic Article
• Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021  Academic Article
• Cloning of a Chromosomal Region Responsible for Streptolysin S Production in Streptococcus pyogenes  Conference Paper
• Cloning, physical mapping and structural characterization of the human α A -adaptin gene  Academic Article
• Co-circulation of multiple genotypes of human rhinovirus during a large outbreak of respiratory illness in a veterans’ long-term care home  Academic Article
• Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform: Figure 1.  Academic Article
• Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"  Academic Article
• Comparative Gene Genealogies Indicate that Two Clonal Lineages ofCryptococcus gattiiin British Columbia ResembleStrains from Other Geographical Areas  Academic Article
• Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica  Academic Article
• Comparison of Gull Feces-Specific Assays Targeting the 16S rRNA Genes of Catellicoccus marimammalium and Streptococcus spp  Academic Article
• Comparison of asymptomatic and symptomatic rhinovirus infections in university students: incidence, species diversity, and viral load  Academic Article
• Comparison of in-house and commercial 16S rRNA sequencing with high-performance liquid chromatography and genotype AS and CM for identification of nontuberculous mycobacteria  Academic Article
• Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths  Academic Article
• Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth  Academic Article
• Complete genome sequence of a raccoon rabies virus isolate  Academic Article
• Complete mitochondrial genome sequence of the heart failure model of cardiomyopathic Syrian hamster (Mesocricetus auratus)  Academic Article
• Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation  Academic Article
• Complete sequences of a novel blaNDM-1-harbouring plasmid from Providencia rettgeri and an FII-type plasmid from Klebsiella pneumoniae identified in Canada  Academic Article
• Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools  Academic Article
• Concepts and techniques in molecular biology—An overview*  Academic Article
• Conservation of Lotus and Arabidopsis Basic Helix-Loop-Helix Proteins Reveals New Players in Root Hair Development      Academic Article
• Considering all the evidence: a reply to Sefc and Koblmüller (2016)  Academic Article
• Construction of First-Generation Adenoviral Vectors  Chapter
• Construction of First-Generation Adenoviral Vectors  Academic Article
• Copy number variation analysis and sequencing of the X-linked mental retardation gene TSPAN7/TM4SF2 in patients with autism spectrum disorder  Academic Article
• Core Histones of the Amitochondriate Protist, Giardia lamblia  Academic Article
• Correcting Illumina data  Academic Article
• Correlation between Azole Susceptibilities, Genotypes, and ERG11 Mutations in Candida albicans Isolates Associated with Vulvovaginal Candidiasis in China  Academic Article
• Culture and Molecular Profiling of the Respiratory Tract Microbiota  Academic Article
• Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota  Academic Article
• DIVERSIFICATION OF SULAWESI MACAQUE MONKEYS: DECOUPLED EVOLUTION OF MITOCHONDRIAL AND AUTOSOMAL DNA  Academic Article
• DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms  Academic Article
• DNA and the revolutions of molecular evolution, computational biology, and bioinformatics  Academic Article
• DNA sequence of the deletion/insertion in early region 3 of Ad5 dl309  Academic Article
• DOMINANT β-THALASSEMIA DUE TO A NEWLY IDENTIFIED FRAMESHIFT MUTATION IN EXON 3 (CODON 113, GTG → TG)  Academic Article
• De novo mutation of the β-globin gene initiation codon (ATG→AAG) in a Northern European  Academic Article
• De novo mutations in the actin genes ACTB and ACTG1 cause Baraitser-Winter syndrome  Academic Article
• Detection of Human Papillomavirus Type 16 DNA in Consecutive Genital Samples Does Not Always Represent Persistent Infection as Determined by Molecular Variant Analysis  Academic Article
• Development of Real-Time PCR Assays for Detection of the Streptococcus milleri Group from Cystic Fibrosis Clinical Specimens by Targeting the cpn60 and 16S rRNA Genes  Academic Article
• Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds  Academic Article
• Diagnostic Utility of Genome-wide DNA Methylation Testing in Genetically Unsolved Individuals with Suspected Hereditary Conditions  Academic Article
• Differential permeability of rivers to raccoon gene flow corresponds to rabies incidence in Ontario, Canada  Academic Article
• Dinucleotide Junction Cleavage Versatility of 8-17 Deoxyribozyme  Academic Article
• Dinucleotide compositional analysis of Sinorhizobium meliloti using the genome signature: distinguishing chromosomes and plasmids  Academic Article
• Discordance between Genetic Structure and Morphological, Ecological, and Physiological Adaptation in Lake Magadi Tilapia  Academic Article
• Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeastCryptococcus gattii  Academic Article
• Diverse Evolutionary Trajectories Characterize a Community of RNA-Cleaving Deoxyribozymes: A Case Study into the Population Dynamics of In Vitro Selection  Academic Article
• Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)  Academic Article
• Diversity and relationships among strains of culturable yeasts in agricultural soils in Cameroon  Academic Article
• Diversity of Integron- and Culture-Associated Antibiotic Resistance Genes in Freshwater Floc  Academic Article
• Diversity, Dispersal and Mode of Reproduction of Amanita exitialis in Southern China  Academic Article
• Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717)  Academic Article
• E-MEM: efficient computation of maximal exact matches for very large genomes  Academic Article
• Ecological Genomics of Marine Roseobacters  Academic Article
• Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps)  Academic Article
• Efficient Algorithms for Counting and Reporting Segregating Sites in Genomic Sequences  Academic Article
• Epitope discovery in West Nile virus infection: Identification and immune recognition of viral epitopes  Academic Article
• Ermap, a gene coding for a novel erythroid specific adhesion/receptor membrane protein  Academic Article
• Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss  Academic Article
• Everolimus and pazopanib (E/P) benefit genomically selected patients with metastatic urothelial carcinoma  Academic Article
• Evidence for Inbreeding and Genetic Differentiation among Geographic Populations of the Saprophytic Mushroom Trogia venenata from Southwestern China  Academic Article
• Evidence that Egfr Contributes to Cryptic Genetic Variation for Photoreceptor Determination in Natural Populations of Drosophila melanogaster  Academic Article
• Evolution of High-Branching Deoxyribozymes from a Catalytic DNA with a Three-Way Junction  Academic Article
• Evolution of genes and genomes on the Drosophila phylogeny  Academic Article
• Evolution of mitochondrial-encoded cytochrome oxidase subunits in endothermic fish: The importance of taxon-sampling in codon-based models  Academic Article
• Evolutionary affinity of billfishes (Xiphiidae and Istiophoridae) and flatfishes (Plueronectiformes): Independent and trans-subordinal origins of endothermy in teleost fishes  Academic Article
• Evolutionary and functional diversity of thePseudomonastype IVa pilin island  Academic Article
• Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis  Academic Article
• Excess of Rare Variants in Non–Genome-Wide Association Study Candidate Genes in Patients With Hypertriglyceridemia  Academic Article
• Exome Sequencing as a Diagnostic Tool for Pediatric‐Onset Ataxia  Academic Article
• Exome sequencing identifies rare variants in multiple genes in atrioventricular septal defect  Academic Article
• Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm  Academic Article
• Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap  Academic Article
• Expression of XIST sense and antisense in bovine fetal organs and cell cultures  Academic Article
• Expression of genes related to metal metabolism in the freshwater fish Hyphessobrycon luetkenii living in a historically contaminated area associated with copper mining  Academic Article
• Extracting Haplotypes from Diploid Organisms  Academic Article
• Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences  Academic Article
• Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error  Academic Article
• Fetal hemoglobin in sickle cell anemia: Genetic studies of the Arab-Indian haplotype  Academic Article
• Fetal hemoglobin in sickle cell anemia: Molecular characterization of the unusually high fetal hemoglobin phenotype in African Americans  Academic Article
• Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi  Academic Article
• Fine-Scale Patterns of Population Stratification Confound Rare Variant Association Tests  Academic Article
• First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins  Academic Article
• Forensic Identity Testing Using Highly Polymorphic DNA Markers: Current Status and Emerging Technologies  Academic Article
• Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun  Academic Article
• Functional DNA methylation signatures for autism spectrum disorder genomic risk loci: 16p11.2 deletions and CHD8 variants  Academic Article
• Functional analysis of genes responsible for the synthesis of the B-band O antigen of Pseudomonas aeruginosa serotype O6 lipopolysaccharide The GenBank accession number for the sequence reported in this paper is AF035937.  Academic Article
• Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences  Academic Article
• Fungal DNA barcoding  Academic Article
• GUTI: a new antigen in the Cromer blood group system  Academic Article
• Gain-of-function mutations in IFIH1 cause a spectrum of human disease phenotypes associated with upregulated type I interferon signaling  Academic Article
• Gene expression after freshwater transfer in gills and opercular epithelia of killifish: insight into divergent mechanisms of ion transport  Academic Article
• Gene transcription of fgl2 in endothelial cells is controlled by Ets-1 and Oct-1 and requires the presence of both Sp1 and Sp3  Academic Article
• Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads  Academic Article
• Genetic Analyses from Ancient DNA  Academic Article
• Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens  Academic Article
• Genetic analysis of historic western Great Lakes region wolf samples reveals earlyCanis lupus/lycaonhybridization  Academic Article
• Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China  Academic Article
• Genetic variants of MARCO are associated with susceptibility to pulmonary tuberculosis in a Gambian population  Academic Article
• Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes  Academic Article
• Genome sequence of the Brown Norway rat yields insights into mammalian evolution  Academic Article
• Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family  Academic Article
• Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.  Academic Article
• Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov.  Academic Article
• Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum  Academic Article
• Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations  Academic Article
• Genomic approaches to bleeding disorders  Conference Paper
• Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori  Academic Article
• Genotypic and Phenotypic Analyses of Two “Isogenic” Strains of the Human Fungal Pathogen Cryptococcus neoformans var. neoformans  Academic Article
• HISEA: HIerarchical SEed Aligner for PacBio data  Academic Article
• Heterologous expression-facilitated natural products’ discovery in actinomycetes  Academic Article
• HiTEC: accurate error correction in high-throughput sequencing data  Academic Article
• High inbreeding, limited recombination and divergent evolutionary patterns between two sympatric morel species in China  Academic Article
• How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish  Academic Article
• Human Chromosome 7: DNA Sequence and Biology  Academic Article
• Human ERMAP: An Erythroid Adhesion/Receptor Transmembrane Protein  Academic Article
• Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study  Academic Article
• Hypophosphatasia: Canadian update on diagnosis and management  Academic Article
• Identification of Mutations in Proviral Long Terminal Repeats of HIV Type 1-Infected Subjects Naive to Drug Therapy  Academic Article
• Identification of Rhizobium-specific intergenic mosaic elements within an essential two-component regulatory system of Rhizobium species  Academic Article
• Identification of a Bacillus anthracis specific indel in the yeaC gene and development of a rapid pyrosequencing assay for distinguishing B. anthracis from the B. cereus group  Academic Article
• Identification of a methylation profile for DNMT1-associated autosomal dominant cerebellar ataxia, deafness, and narcolepsy  Academic Article
• Identification of epigenetic signature associated with alpha thalassemia/mental retardation X-linked syndrome  Academic Article
• Identification, spatial expression analysis and functional characterization of a pyrokinin-1 receptor in the Chagas’ disease vector, Rhodnius prolixus  Academic Article
• Immunofluorometric assay of p53 protein versus sequencing of p53 exons 5 to 9 for the detection of p53 abnormalities in ovarian carcinoma.  Academic Article
• Impact ofβ2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults  Academic Article
• Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)  Academic Article
• Improving diagnostic precision, care and syndrome definitions using comprehensive next-generation sequencing for the inherited bone marrow failure syndromes  Academic Article
• Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins  Academic Article
• Infected or Not Infected? Next-Generation DNA Sequencing Is Not the Answer...Yet  Academic Article
• Insights into the Development and Evolution of Exaggerated Traits Using De Novo Transcriptomes of Two Species of Horned Scarab Beetles  Academic Article
• Interactions between flagellar and type III secretion proteins in Chlamydia pneumoniae  Academic Article
• Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity  Academic Article
• Investigation of Intercellular Salicylic Acid Accumulation during Compatible and Incompatible Arabidopsis-Pseudomonas syringae Interactions Using a Fast Neutron-Generated Mutant Allele of EDS5 Identified by Genetic Mapping and Whole-Genome Sequencing  Academic Article
• Investigation of a platelet factor 4 polymorphism on the immune response in patients with heparin-induced thrombocytopenia  Academic Article
• Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites  Academic Article
• Isolation and sequencing of gene fusions carried by λplacMu specialized transducing phage  Academic Article
• Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity  Academic Article
• Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae  Academic Article
• Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis  Academic Article
• Lifetime performance in foraging honeybees: behaviour and physiology  Academic Article
• Limb defects in homozygous α-thalassemia: Report of three cases  Academic Article
• Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa  Academic Article
• Long-distance dispersal and recombination in environmental populations of Cryptococcus neoformans var. grubii from India  Academic Article
• MONKEYS AND TOADS DEFINE AREAS OF ENDEMISM ON SULAWESI  Academic Article
• Malignant phyllodes tumours show stromal overexpression of c-myc and c-kit  Academic Article
• Mapping the Substrate Recognition Landscapes of Metalloproteases Using Comprehensive Mutagenesis  Academic Article
• Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform  Academic Article
• Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA  Academic Article
• Microbial Diversity and Host-Specific Sequences of Canada Goose Feces  Academic Article
• Microbial Diversity in Engineered Haloalkaline Environments Shaped by Shared Geochemical Drivers Observed in Natural Analogues  Academic Article
• Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances  Academic Article
• Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt  Academic Article
• Mitochondria and Cancer: Past, Present, and Future  Academic Article
• Mixed parentage inNeolamprologus pulchergroups  Academic Article
• Modular Evolution and the Origins of Symmetry: Reconstruction of a Three-Fold Symmetric Globular Protein  Academic Article
• Molecular Diagnostic Yield of Chromosomal Microarray Analysis and Whole-Exome Sequencing in Children With Autism Spectrum Disorder  Academic Article
• Molecular analysis of a 11 700-year-old rodent midden from the Atacama Desert, Chile  Academic Article
• Molecular and expression analysis of the Rhizobium meliloti phosphoenolpyruvate carboxykinase (pckA) gene  Academic Article
• Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water  Academic Article
• Molecular cloning, localization and characterization of a 40-kDa catecholamine-regulated protein  Academic Article
• Molecular evidence for dual pyrethroid-receptor sites on a mosquito sodium channel  Academic Article
• Molecular mechanisms of cefoxitin resistance in Escherichia coli from the Toronto area hospitals  Academic Article
• Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos  Academic Article
• Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia  Academic Article
• Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.  Academic Article
• Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae  Academic Article
• Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes  Conference Paper
• Morphological and molecular characterization of Orbilia pseudopolybrocha and O. tonghaiensis, two new species of Orbiliaceae from China  Academic Article
• Mosaic Activating Mutations in FGFR1 Cause Encephalocraniocutaneous Lipomatosis  Academic Article
• Multicopy gene family evolution on primate Y chromosomes  Academic Article
• Multilocus sequence typing ofCandida africanafrom patients with vulvovaginal candidiasis in New Delhi, India  Academic Article
• Multimerin  Academic Article
• Multiple gene genealogical analyses suggest divergence and recent clonal dispersal in the opportunistic human pathogen Candida guilliermondii  Academic Article
• Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD  Academic Article
• Murine Hn1 on Chromosome 11 is expressed in hemopoietic and brain tissues  Academic Article
• Mutations in the genome of porcine reproductive and respiratory syndrome virus responsible for the attenuation phenotype  Academic Article
• Mutations inSYNGAP1Cause Intellectual Disability, Autism, and a Specific Form of Epilepsy by Inducing Haploinsufficiency  Academic Article
• Mylodon darwinii DNA sequences from ancient fecal hair shafts  Academic Article
• NAD(P) ⁺ -Malic Enzyme Mutants of Sinorhizobium sp. Strain NGR234, but Not Azorhizobium caulinodans ORS571, Maintain Symbiotic N ₂ Fixation Capabilities  Academic Article
• NADPH oxidase complex and IBD candidate gene studies: identification of a rare variant inNCF2that results in reduced binding to RAC2  Academic Article
• NRAGE, A Novel MAGE Protein, Interacts with the p75 Neurotrophin Receptor and Facilitates Nerve Growth Factor–Dependent Apoptosis  Academic Article
• Natal homing in juvenile loggerhead turtles (Caretta caretta)  Academic Article
• Neandertal Genetics  Academic Article
• Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)  Academic Article
• North American matsutake: names clarified and a new species described  Academic Article
• Novel (cys152>arg) missense mutation in an Arab patient with Canavan disease  Academic Article
• Novel GNE Mutations in Autosomal Recessive Hereditary Inclusion Body Myopathy Patients  Academic Article
• Nuclear Gene Sequences from a Late Pleistocene Sloth Coprolite  Academic Article
• Nucleotide Variation in the Egfr Locus of Drosophila melanogaster  Academic Article
• Pan-African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’  Academic Article
• Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods  Academic Article
• Partial characterization of the genome of nine animal caliciviruses  Academic Article
• Paternal transmission of the congenital form of myotonic dystrophy type 1: A new case and review of the literature  Academic Article
• Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes  Academic Article
• Patterns of Human Oral Yeast Species Distribution on Hainan Island in China  Academic Article
• Phenotypic Diversity Caused by Differential RpoS Activity among Environmental Escherichia coli Isolates  Academic Article
• Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces  Academic Article
• Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)  Academic Article
• Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing  Academic Article
• Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera  Academic Article
• Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones  Academic Article
• Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera  Academic Article
• Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov.  Academic Article
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Academic Article
• Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov.  Academic Article
• Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B  Academic Article
• Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau  Academic Article
• Placental Transforming Growth Factor-β Is a Downstream Mediator of the Growth Arrest and Apoptotic Response of Tumor Cells to DNA Damage and p53 Overexpression  Academic Article
• Plant DNA sequences from feces: potential means for assessing diets of wild primates  Academic Article
• Pollux: platform independent error correction of single and mixed genomes  Academic Article
• Polymorphism and selection of rpoS in pathogenic Escherichia coli  Academic Article
• Predation in Homogeneous and Heterogeneous Phage Environments Affects Virulence Determinants of Pseudomonas aeruginosa  Academic Article
• Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet  Academic Article
• Presence of Archaea in the Indoor Environment and Their Relationships with Housing Characteristics  Academic Article
• Protein phosphatase 2A plays a crucial role in Giardia lamblia differentiation  Academic Article
• Protein preservation and DNA retrieval from ancient tissues  Academic Article
• Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces a aThe GenBank accession numbers for the sequences reported in this paper are indicated in the text.  Academic Article
• Pyrosequencing reveals the complex polymicrobial nature of invasive pyogenic infections: microbial constituents of empyema, liver abscess, and intracerebral abscess  Academic Article
• RACER: Rapid and accurate correction of errors in reads  Academic Article
• RAD sequencing and genomic simulations resolve hybrid origins within North American Canis  Academic Article
• RUNX2 tandem repeats and the evolution of facial length in placental mammals  Academic Article
• Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus  Academic Article
• Rapid isolation of DNA from fossil and museum specimens suitable for PCR.  Academic Article
• Rapid screening of microsatellite markers for polymorphisms using SYBR^® Green I and a DNA sequencer  Academic Article
• Rare Copy Number Variation Discovery and Cross-Disorder Comparisons Identify Risk Genes for ADHD  Academic Article
• Re-Evaluation of a Bacterial Antifreeze Protein as an Adhesin with Ice-Binding Activity  Academic Article
• Recent developments in the genetic history of East Asia and Oceania  Academic Article
• Reduced Representation Genome Sequencing Suggests Low Diversity on the Sex Chromosomes of Tonkean Macaque Monkeys  Academic Article
• Resolving the root of the avian mitogenomic tree by breaking up long branches  Academic Article
• Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths)  Academic Article
• Revitalization of Six Abandoned Catalytic DNA Species Reveals a Common Three-way Junction Framework and Diverse Catalytic Cores  Academic Article
• Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species  Academic Article
• Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti  Academic Article
• SAGE2: parallel human genome assembly  Academic Article
• SAGE: String-overlap Assembly of GEnomes  Academic Article
• SHRiMP2: Sensitive yet Practical Short Read Mapping  Academic Article
• Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA  Academic Article
• Screening of hypoxia-inducible genes in sporadic ALS  Academic Article
• Searching for Substitution Rate Heterogeneity  Academic Article
• Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849  Academic Article
• Sequence variation at the major histocompatibility complex locus DQ beta in beluga whales (Delphinapterus leucas)  Academic Article
• Sequence‐Based Screening of Patients With Idiopathic Polyarteritis Nodosa, Granulomatosis With Polyangiitis, and Microscopic Polyangiitis for Deleterious Genetic Variants in ADA2  Academic Article
• Severe presentation of Beckwith–Wiedemann syndrome associated with high levels of constitutional paternal uniparental disomy for chromosome 11p15  Academic Article
• Sex Identification of Elk (Cervus elaphus canadensis), Moose (Alces alces), and White-Tailed Deer (Odocoileus virginianus) Using the Polymerase Chain Reaction  Academic Article
• Signature proteins for the major clades of Cyanobacteria  Academic Article
• Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats  Academic Article
• SnapShot: High-Throughput Sequencing Applications  Academic Article
• Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation  Academic Article
• Species Specificity of Ectromelia Virus and Vaccinia Virus Interferon-γ Binding Proteins  Academic Article
• Spectrum of β-Thalassemia Mutations in Egypt  Academic Article
• Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory  Academic Article
• StrandAdvantage test for early-line and advanced-stage treatment decisions in solid tumors  Academic Article
• Strandedness during cDNA synthesis, the stranded parameter in htseq-count and analysis of RNA-Seq data  Academic Article
• Swine Outbreak of Pandemic Influenza A Virus on a Canadian Research Farm Supports Human-to-Swine Transmission  Academic Article
• Sympatric wolf and coyote populations of the western Great Lakes region are reproductively isolated  Academic Article
• Targeted Re-Sequencing Emulsion PCR Panel for Myopathies: Results in 94 Cases  Academic Article
• Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death  Academic Article
• Targeted exonic sequencing of GWAS loci in the high extremes of the plasma lipids distribution  Academic Article
• Telomere length analysis in goat clones and their offspring  Academic Article
• Testing personalized medicine: patient and physician expectations of next-generation genomic sequencing in late-stage cancer care  Academic Article
• The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmid-related sequences  Academic Article
• The Composite Genome of the Legume Symbiont Sinorhizobium meliloti  Academic Article
• The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair  Academic Article
• The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia  Academic Article
• The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly  Academic Article
• The Pipid Root  Academic Article
• The Role of a Novel TRMT1 Gene Mutation and Rare GRM1 Gene Defect in Intellectual Disability in Two Azeri Families  Academic Article
• The Telomere Lengthening Mechanism in Telomerase-Negative Immortal Human Cells Does Not Involve the Telomerase RNA Subunit  Academic Article
• The cDNA Sequence of Human Endothelial Cell Multimerin  Academic Article
• The complete sequence of the 1,683-kb pSymB megaplasmid from the N ₂ -fixing endosymbiont Sinorhizobium meliloti  Academic Article
• The detection of Cryptosporidium and the resolution of mixtures of species and genotypes from water  Academic Article
• The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans.  Academic Article
• The effects of inhaled aztreonam on the cystic fibrosis lung microbiome  Academic Article
• The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis  Academic Article
• The gene cluster for chloramphenicol biosynthesis in Streptomyces venezuelae ISP5230 includes novel shikimate pathway homologues and a monomodular non-ribosomal peptide synthetase gene The GenBank accession number for the sequence reported in this paper is AF262220.  Academic Article
• The genetic diversity of Epstein–Barr virus in the setting of transplantation relative to non‐transplant settings: A feasibility study  Academic Article
• The genome of the nematode Pristionchus pacificus encodes putative homologs of RXR/Usp and EcR  Academic Article
• The genus Prevotella in cystic fibrosis airways  Academic Article
• The nucleotide sequence of the 5′-untranslated region of bovine viral diarrhoea virus: its use as a probe in rapid detection of bovine viral diarrhoea viruses and border disease viruses  Academic Article
• The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances  Academic Article
• The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterization The GenBank accession number for the sequence reported in this paper is AF286159.  Academic Article
• The role of clinical response to treatment in determining pathogenicity of genomic variants  Academic Article
• The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria  Academic Article
• The serotonin transporter polymorphisms and major depression following traumatic brain injury  Academic Article
• Thrice better than once: quality control guidelines to validate new mitogenomes  Academic Article
• Tracing Sequence Diversity Change of RNA-Cleaving Deoxyribozymes under Increasing Selection Pressure during in Vitro Selection  Academic Article
• Tracking Host Sources of Cryptosporidium spp. in Raw Water for Improved Health Risk Assessment  Academic Article
• Tracking mtDNA Heteroplasmy through Multiple Generations in the North Atlantic Right Whale (Eubalaena glacialis)  Academic Article
• Transcriptome analysis ofSchistosoma mansonilarval development using serial analysis of gene expression (SAGE)  Academic Article
• Unmelanized Plumage Patterns in Old World Leaf Warblers Do Not Correspond to Sequence Variation at the Melanocortin-1 Receptor Locus (MC1R)  Academic Article
• Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes  Academic Article
• Unsupervised statistical clustering of environmental shotgun sequences  Academic Article
• Utility of whole‐exome sequencing for those near the end of the diagnostic odyssey: time to address gaps in care  Academic Article
• Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators  Academic Article
• Western Database of Lipid Variants (WDLV): A Catalogue of Genetic Variants in Monogenic Dyslipidemias  Academic Article
• Whole-exome sequencing identified a patient with TMCO1 defect syndrome and expands the phenotic spectrum  Academic Article
• Whole-genome sequencing of quartet families with autism spectrum disorder  Academic Article
• Within-group relatedness is correlated with colony-level social structure and reproductive sharing in a social fish  Academic Article
• Yersinia pestis genotyping.  Academic Article
• α⁰-Thalassemia Due to a 90.7 kb Deletion (– –^NFLD)  Academic Article
• “Colony Sequencing”: Direct Sequencing of Plasmid DNA from Bacterial Colonies  Academic Article