Phylogeny
Concept
Vocabulary Service
Overview
subject area of
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'Outlier' lipocalins more than peripheral Academic Article
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17 th Century Variola Virus Reveals the Recent History of Smallpox Academic Article
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Sequence Note: Molecular Epidemiological Analysis of Human Immunodeficiency Virus Type 1 in Newfoundland, Canada Academic Article
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Torulaspora quercuumâ sp. nov. andCandida pseudohumilisâ sp. nov., novel yeasts from human and forest habitats Academic Article
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d
-Ala-
d
-Ala ligases from glycopeptide antibiotic-producing organisms are highly homologous to the enterococcal vancomycin-resistance ligases VanA and VanB Academic Article
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A Catalog of Reference Genomes from the Human Microbiome Academic Article
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A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods Academic Article
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A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches Academic Article
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A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals Academic Article
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A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan
Tetrahymena thermophila Academic Article
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A T-to-G Transversion at Nucleotide −567 Upstream of
HBG2
in a GATA-1 Binding Motif Is Associated with Elevated Hemoglobin F Academic Article
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A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism Academic Article
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A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads Academic Article
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A comparative study of an innate immune response in Lamprologine cichlid fishes Academic Article
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A comprehensive genomic history of extinct and living elephants Academic Article
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A comprehensive study of genic variation in natural populations of Drosophila melanogaster. IV. Mitochondrial DNA variation and the role of history vs. selection in the genetic structure of geographic populations. Academic Article
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A divergentPseudomonas aeruginosapalmitoyltransferase essential for cystic fibrosis-specific lipid A Academic Article
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A draft genome of Yersinia pestis from victims of the Black Death Academic Article
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A functionally divergent hydrogenosomal peptidase with protomitochondrial ancestry Academic Article
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A maximum likelihood approach to the detection of selection from a phylogeny Academic Article
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A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution Academic Article
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A new fossil assemblage shows that large angiosperm trees grew in North America by the Turonian (Late Cretaceous) Academic Article
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A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution Academic Article
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A phylogenetic analysis based on the gene encoding phosphoglycerate kinase Academic Article
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A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history Academic Article
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A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. Academic Article
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A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex) Academic Article
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A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives Academic Article
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A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia Academic Article
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A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera Academic Article
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A phylogenomic framework and timescale for comparative studies of tunicates Academic Article
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A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov. Academic Article
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A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades Academic Article
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A spliceosomal intron in
Giardia
lamblia Academic Article
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ANATOMIC ASYMMETRY IN THE TEMPORAL LOBES: ITS DOCUMENTATION, PHYLOGENESIS, AND RELATIONSHIP TO FUNCTIONAL ASYMMETRY Academic Article
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AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology Academic Article
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Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set Academic Article
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Abundant sequence variation around the mitochondrial origin of replication in the human opportunistic yeast pathogen Candida albicans from a tropical island in China Academic Article
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Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates Academic Article
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Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities Academic Article
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Additional molecular support for the new chordate phylogeny Academic Article
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Adenosine kinase and ribokinase – the RK family of proteins Academic Article
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Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses Academic Article
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Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity Academic Article
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Alignment/Phylogeny of the Papain Superfamily of Cysteine Proteases Academic Article
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Amplification and sequencing of DNA from a 120–135-million-year-old weevil Academic Article
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An Assessment of Sub-Meter Scale Spatial Variability of Arcellinida (Testate Lobose Amoebae) Assemblages in a Temperate Lake: Implications for Limnological Studies Academic Article
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An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli Academic Article
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An evolutionary model for the insect vitellins Academic Article
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An unusual myosuppressin from the blood-feeding bugRhodnius prolixus Academic Article
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An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Academic Article
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Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes Academic Article
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Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain Academic Article
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Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus) Academic Article
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Ancient Antibiotics, Ancient Resistance Academic Article
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Ancient DNA Academic Article
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Ancient DNA and the tropics: a rodent's tale Academic Article
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Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics Academic Article
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Ancient Mitogenomes Reveal the Evolutionary History and Biogeography of Sloths Academic Article
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Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array Academic Article
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Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta) Academic Article
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Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia Academic Article
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AnnoTree: visualization and exploration of a functionally annotated microbial tree of life Academic Article
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Antibiotic resistance is ancient Academic Article
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Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions Academic Article
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Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons? Academic Article
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Armadillos exhibit less genetic polymorphism in North America than in South America: nuclear and mitochondrial data confirm a founder effect in Dasypus novemcinctus (Xenarthra) Academic Article
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Army Ants Trapped by Their Evolutionary History Academic Article
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Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections Academic Article
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Asymmetrical Evolution of Cytochrome bd Subunits Academic Article
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Autoecological Approaches to Resolve Subjective Taxonomic Divisions within Arcellacea Academic Article
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Bacillus DNA in fossil bees: an ancient symbiosis? Academic Article
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Bacterial biogeography of the human digestive tract Academic Article
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Bats and Coronaviruses Academic Article
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Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution Academic Article
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Beltrania sinensis sp. nov., an endophytic fungus from China and a key to species of the genus Academic Article
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Broad and Differential Animal Angiotensin-Converting Enzyme 2 Receptor Usage by SARS-CoV-2 Academic Article
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Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites Academic Article
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CLONING AND CHARACTERIZATION OF AN mRNA ENCODING AN INSULIN RECEPTOR FROM THE HORNED SCARAB BEETLEOnthophagus nigriventris(COLEOPTERA: SCARABAEIDAE) Academic Article
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Candida auris on Apples: Diversity and Clinical Significance Academic Article
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Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling Academic Article
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Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia Academic Article
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Characterization and assessment of an avian repetitive DNA sequence as an icterid phylogenetic marker Academic Article
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Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil Academic Article
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Characterization of Class I– and Class II–Like Major Histocompatibility Complex Loci in Pedigrees of North Atlantic Right Whales Academic Article
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Characterization of a Rifampin-Inactivating Glycosyltransferase from a Screen of Environmental Actinomycetes Academic Article
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Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase Academic Article
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Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity Academic Article
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Chimeric Structure of the NAD(P)+- and NADP+-dependent Malic Enzymes ofRhizobium (Sinorhizobium) meliloti Academic Article
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Chitinase genes (
CHIA
s) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals Academic Article
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Chlamydiae-specific proteins and indels: novel tools for studies Academic Article
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Clades of huge phages from across Earth’s ecosystems Academic Article
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Clinical and tree hollow populations of human pathogenic yeast in Hamilton, Ontario, Canada are different Academic Article
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Clonal Genotype of Geomyces destructans among Bats with White Nose Syndrome, New York, USA Academic Article
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Clonal and Spontaneous Origins of Fluconazole Resistance in
Candida albicans Academic Article
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Cloning and Some Novel Characteristics of Mitochondrial Hsp70 from Chinese Hamster Cells Academic Article
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Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Academic Article
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Cloning of the hsp70 (dnaK) genes from Rhizobium meliloti and Pseudomonas cepacia: phylogenetic analyses of mitochondrial origin based on a highly conserved protein sequence Academic Article
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Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes Academic Article
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Cold-Active Winter Rye Glucanases with Ice-Binding Capacity Academic Article
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Comment on "Hexapod Origins: Monophyletic or Paraphyletic?" Academic Article
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Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum Academic Article
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Comparative Gene Genealogies Indicate that Two Clonal Lineages of
Cryptococcus gattii
in British Columbia ResembleStrains from Other Geographical Areas Academic Article
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Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum Academic Article
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Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution Academic Article
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Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness Academic Article
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Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes Academic Article
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Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans Academic Article
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Comparative molecular phylogeography of two
Xenopus
species,
X. gilli
and
X. laevis
, in the south‐western Cape Province, South Africa Academic Article
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Comparative proteome analysis of Acidaminococcus intestini supports a relationship between outer membrane biogenesis in Negativicutes and Proteobacteria Academic Article
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Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability Academic Article
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Comparison of fecal biota from specific pathogen free and feral mice Academic Article
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Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris Academic Article
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Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths Academic Article
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Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation Academic Article
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Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools Academic Article
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Conserved Molecular Signatures in the Spike, Nucleocapsid, and Polymerase Proteins Specific for the Genus Betacoronavirus and Its Different Subgenera Academic Article
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Conserved Signatures in Protein Sequences Reliably Demarcate Different Clades of Rodents/Glires Species and Consolidate Their Evolutionary Relationships Academic Article
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Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria Academic Article
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Constraining the Time Interval for the Origin of Life on Earth Academic Article
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Control of breathing and adaptation to high altitude in the bar-headed goose Academic Article
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Convergence of gut microbiomes in myrmecophagous mammals Academic Article
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Corticosteroid receptor gene expression is related to sex and social behaviour in a social fish Academic Article
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Critical Issues in Bacterial Phylogeny Academic Article
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Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age Academic Article
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DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms Academic Article
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DNA methylation predicts age and provides insight into exceptional longevity of bats Academic Article
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Dating the Ngandong Humans Academic Article
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Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes Academic Article
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Demographic expansion and genetic load of the halophyte model plantEutrema salsugineum Academic Article
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Detecting recent speciation events: the case of the finless porpoise (genus Neophocaena) Academic Article
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Development and Evaluation of a Molecular Hepatitis A Virus Assay for Serum and Stool Specimens Academic Article
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Development of Real-Time PCR Assays for Detection of the
Streptococcus milleri
Group from Cystic Fibrosis Clinical Specimens by Targeting the
cpn60
and 16S rRNA Genes Academic Article
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Differential Y‐chromosome Anatolian Influences on the Greek and Cretan Neolithic Academic Article
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Directionality in the evolution of influenza A haemagglutinin Academic Article
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Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella Academic Article
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Dispersers shape fruit diversity in
Ficus
(Moraceae) Academic Article
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Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432) Academic Article
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Distinctive Protein Signatures Provide Molecular Markers and Evidence for the Monophyletic Nature of the
Deinococcus-Thermus
Phylum Academic Article
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Diurnal Floc Generation from Neuston Biofilms in Two Contrasting Freshwater Lakes Academic Article
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Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeastCryptococcus gattii Academic Article
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Divergent respiratory and cardiovascular responses to hypoxia in bar-headed geese and Andean birds Academic Article
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Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus) Academic Article
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Diversification of Wolbachia Endosymbiont in the Culex pipiens Mosquito Academic Article
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Diversity Considerations in HIV-1 Vaccine Selection Academic Article
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Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries) Academic Article
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Diversity and relationships among strains of culturable yeasts in agricultural soils in Cameroon Academic Article
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Diversity of Rotavirus Strains Circulating in Botswana before and after introduction of the Monovalent Rotavirus Vaccine Academic Article
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Diversity of commensal yeasts within and among healthy hosts Academic Article
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Diversity, Dispersal and Mode of Reproduction of Amanita exitialis in Southern China Academic Article
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Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717) Academic Article
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Drainage isolation and climate change-driven population expansion shape the genetic structures of Tuber indicum complex in the Hengduan Mountains region Academic Article
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Dynamic evolution of eukaryotic mitochondrial and nuclear genomes: a case study in the gourmet pine mushroom
Tricholoma matsutake Academic Article
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EVOLUTION OF THE CLOSELY RELATED, SEX-RELATED GENES DM-W AND DMRT1 IN AFRICAN CLAWED FROGS (XENOPUS) Academic Article
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Ecological Genomics of Marine Roseobacters Academic Article
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Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps) Academic Article
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Environmental and nutritional regulation of expression and function of two peptide transporter (PepT1) isoforms in a euryhaline teleost Academic Article
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Enzyme Evolution Explained (Sort Of) Academic Article
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Estimating Maximum Likelihood Phylogenies with PhyML Academic Article
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Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss Academic Article
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Evidence for Inbreeding and Genetic Differentiation among Geographic Populations of the Saprophytic Mushroom Trogia venenata from Southwestern China Academic Article
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Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes to
Giardia
lamblia
and
Entamoeba
histolytica Academic Article
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Evidence for local DNA influences on patterns of substitutions in the human α-interferon gene family Academic Article
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Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms Academic Article
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Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms. Academic Article
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Evidence for the presence of key chlorophyll-biosynthesis-related proteins in the genus Rubrobacter (Phylum Actinobacteria) and its implications for the evolution and origin of photosynthesis Academic Article
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Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants Academic Article
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Evidence of unique genetic diversity inAspergillus fumigatusisolates from Cameroon Academic Article
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Evidence that Human
Chlamydia pneumoniae
Was Zoonotically Acquired Academic Article
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Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila Academic Article
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Evolution of
Drosophila
sex comb length illustrates the inextricable interplay between selection and variation Academic Article
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Evolution of Allosteric Control in Glycogen Phosphorylase Academic Article
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Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia Academic Article
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Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes Academic Article
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Evolution of Proteasome Regulators in Eukaryotes Academic Article
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Evolution of RAG-1 in Polyploid Clawed Frogs Academic Article
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Evolution of genes and genomes on the Drosophila phylogeny Academic Article
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Evolution of the Largest Mammalian Genome Academic Article
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Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria Academic Article
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Evolution of the chaperonin families (HSP60, HSP 10 and TCP-1) of proteins and the origin of eukaryotic cells Academic Article
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Evolution-guided discovery of antibiotics that inhibit peptidoglycan remodelling Academic Article
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Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta Academic Article
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Evolutionary and Functional Analyses of the Interaction between the Myeloid Restriction Factor SAMHD1 and the Lentiviral Vpx Protein Academic Article
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Evolutionary and functional diversity of thePseudomonastype IVa pilin island Academic Article
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales Academic Article
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Evolutionary rate variation withinMus APRT Academic Article
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Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis Academic Article
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Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle Academic Article
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Expanding the soil antibiotic resistome: exploring environmental diversity Academic Article
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Exploratory analysis of multiple sequence alignments using phylogenies Academic Article
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Expressed sequence tags from the Yukon ecotype of Thellungiella
reveal that gene expression in response to cold, drought and salinity
shows little overlap Academic Article
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Extensive Genetic Diversity and Widespread Azole Resistance in Greenhouse Populations of Aspergillus fumigatus in Yunnan, China Academic Article
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Extracting Haplotypes from Diploid Organisms Academic Article
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Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences Academic Article
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Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error Academic Article
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Fate of Cd during Microbial Fe(III) Mineral Reduction by a Novel and Cd-TolerantGeobacterSpecies Academic Article
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First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins Academic Article
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Fish gill morphology: inside out Academic Article
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Fossil Rhabdoviral Sequences Integrated into Arthropod Genomes: Ontogeny, Evolution, and Potential Functionality Academic Article
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Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun Academic Article
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Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization Academic Article
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Functional Divergence in the Arabidopsis -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States Academic Article
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Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae Academic Article
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Functional analysis of CfSnf1 in the development and pathogenicity of anthracnose fungus Colletotrichum fructicola on tea-oil tree Academic Article
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Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences Academic Article
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Fungal mitochondrial genomes and genetic polymorphisms Academic Article
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Fungal species concepts in the genomics era Academic Article
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Galactitol catabolism in Sinorhizobium meliloti is dependent on a chromosomally encoded sorbitol dehydrogenase and a pSymB-encoded operon necessary for tagatose catabolism Academic Article
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Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat? Academic Article
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Gene duplication and divergence produce divergent MHC genotypes without disassortative mating Academic Article
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Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing Academic Article
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Genetic Analyses from Ancient DNA Academic Article
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Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens Academic Article
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Genetic Diversity of Dahongjun, the Commercially Important “Big Red Mushroom” from Southern China Academic Article
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Genetic Structure of Herpetofauna on Halmahera Island, Indonesia: Implications for Aketajawe-Lolobata National Park Academic Article
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Genetic Tracking of the Raccoon Variant of Rabies Virus in Eastern North America Academic Article
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Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria Academic Article
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Genetic and epidemiological analysis of norovirus from children with gastroenteritis in Botswana, 2013–2015 Academic Article
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Genetic differentiation, recombination and clonal expansion in environmental populations of Cryptococcus gattii in India Academic Article
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Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China Academic Article
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Genetic risk for dengue hemorrhagic fever and dengue fever in multiple ancestries Academic Article
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Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West and Central Africa Academic Article
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Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae Academic Article
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Genome duplication events have led to a diversification in the CPT I gene family in fish Academic Article
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Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes Academic Article
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Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family Academic Article
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Genome structure and gene content in protist mitochondrial DNAs Academic Article
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Genome-Scale Phylogeny and the Detection of Systematic Biases Academic Article
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Genome-Wide Identification and Expression Analysis of Udp-Glucuronosyltransferases in the Whitefly Bemisia Tabaci (Gennadius) (HemipterA: Aleyrodidae) Academic Article
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Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Academic Article
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Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov. Academic Article
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Genomic Analyses Identify Novel Molecular Signatures Specific for the Caenorhabditis and other Nematode Taxa Providing Novel Means for Genetic and Biochemical Studies Academic Article
-
Genomic Minimalism in the Early Diverging Intestinal Parasite
Giardia lamblia Academic Article
-
Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum Academic Article
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Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress Academic Article
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Genomic insights into the evolution and ecology of botulinum neurotoxins Academic Article
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Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene Academic Article
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Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria Academic Article
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Genomics of Loa loa, a Wolbachia-free filarial parasite of humans Academic Article
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Genotypic diversity and antifungal susceptibility of environmental isolates of Cryptococcus neoformans from the Yangtze River Delta region of East China Academic Article
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HSP70 phylogeny and the relationship between archaebacteria, eubacteria, and eukaryotes Academic Article
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HYBRIDIZATION AND POPULATION GENETICS OF TWO MACAQUE SPECIES IN SULAWESI, INDONESIA Academic Article
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Have wing morphology or flight kinematics evolved for extreme high altitude migration in the bar-headed goose? Academic Article
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Helicokinin alters ion transport in the secondary cell-containing region of the Malpighian tubule of the larval cabbage looper Trichoplusia ni Academic Article
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Heterologous Complementation Reveals a Specialized Activity for BacA in the Medicago–Sinorhizobium meliloti Symbiosis Academic Article
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Heterotachy and long-branch attraction in phylogenetics Academic Article
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High inbreeding, limited recombination and divergent evolutionary patterns between two sympatric morel species in China Academic Article
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Human symbionts inject and neutralize antibacterial toxins to persist in the gut Academic Article
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Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin Academic Article
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Identification and characterization of RED120: A conserved PWI domain protein with links to splicing and 3′-end formation Academic Article
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Identification and characterization of the proteolytic flagellin from the common freshwater bacterium Hylemonella gracilis Academic Article
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Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish Academic Article
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Identification of a Hydroxyproline Transport System in the Legume Endosymbiont Sinorhizobium meliloti Academic Article
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Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor Academic Article
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Identification of a Novel Hepatitis C Virus Genotype From Punjab, India: Expanding Classification of Hepatitis C Virus Into 8 Genotypes Academic Article
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Identification of a conserved 8 aa insert in the PIP5K protein in theSaccharomycetaceaefamily of fungi and the molecular dynamics simulations and structural analysis to investigate its potential functional role Academic Article
-
Identification of a diphtheria toxin‐like gene family beyond the
Corynebacterium
genus Academic Article
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Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups Academic Article
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Identification of numerous hepatitis C virus genotypes in Montreal, Canada Academic Article
-
Identification of the putative goldfish (Carassius auratus) magnesium transporter SLC41a1 and functional regulation in the gill, kidney, and intestine in response to dietary and environmental manipulations Academic Article
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Identification, spatial expression analysis and functional characterization of a pyrokinin-1 receptor in the Chagas’ disease vector, Rhodnius prolixus Academic Article
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Identifying producers of antibacterial compounds by screening for antibiotic resistance Academic Article
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Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification Academic Article
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Incidence of elephant endotheliotropic herpesvirus in Asian elephants in India Academic Article
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Increase in Carbohydrate Utilization in High-Altitude Andean Mice Academic Article
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Indole-3-Acetic Acid Production by Endophytic Streptomyces sp. En-1 Isolated from Medicinal Plants Academic Article
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Infants’ First Solid Foods: Impact on Gut Microbiota Development in Two Intercontinental Cohorts Academic Article
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Inferring Bacterial Genome Flux While Considering Truncated Genes Academic Article
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Inferring sequence regions under functional divergence in duplicate genes Academic Article
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Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. Academic Article
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Insulin signaling and limb-patterning: candidate pathways for the origin and evolutionary diversification of beetle ‘horns’ Academic Article
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Integrated gene and species phylogenies from unaligned whole genome protein sequences Academic Article
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Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity Academic Article
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Interspecies Recombination Contributes Minimally to Fluoroquinolone Resistance in
Streptococcus pneumoniae Academic Article
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Interspecific variation in hypoxia tolerance and hypoxia acclimation responses in killifish from the family Fundulidae Academic Article
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Investigation of a severe SARS-CoV-2 outbreak in a long-term care home early in the pandemic Academic Article
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Iron-Dependent Hydrogenases ofEntamoeba histolyticaandGiardia lamblia:Activity of the Recombinant Entamoebic Enzyme and Evidence for Lateral Gene Transfer Academic Article
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Is Antigenic Sin Always “Original?” Re-examining the Evidence Regarding Circulation of a Human H1 Influenza Virus Immediately Prior to the 1918 Spanish Flu Academic Article
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Is there convergence in the molecular pathways underlying the repeated evolution of sociality in African cichlids? Academic Article
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Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites Academic Article
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Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth Academic Article
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Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production Academic Article
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Iterative Evolution of Increased Behavioral Variation Characterizes the Transition to Sociality in Spiders and Proves Advantageous Academic Article
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It’s Not Easy Being Blue: Are There Olfactory and Visual Trade-Offs in Plant Signalling? Academic Article
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JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL Academic Article
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Laboratory Characterization of Methicillin‐ResistantStaphylococcus aureusin Canadian Hospitals: Results of 5 Years of National Surveillance, 1995–1999 Academic Article
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Large freshwater phages with the potential to augment aerobic methane oxidation Academic Article
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits Academic Article
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Latent homologues for the neural crest as an evolutionary novelty Academic Article
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Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae Academic Article
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Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis Academic Article
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Les datations moléculaires à l’heure de la génomique Academic Article
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Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals Academic Article
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Life history evolution in cichlids 1: revisiting the evolution of life histories in relation to parental care Academic Article
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Life history evolution in cichlids 2: directional evolution of the trade-off between egg number and egg size Academic Article
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Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function Academic Article
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Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations Conference Paper
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Metabolomic-guided discovery of cyclic nonribosomal peptides from Xylaria ellisii sp. nov., a leaf and stem endophyte of Vaccinium angustifolium Academic Article
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Microbial Diversity and Host-Specific Sequences of Canada Goose Feces Academic Article
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Microbial Geoengineers Academic Article
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Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances Academic Article
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Microbial systematics in the post-genomics era Academic Article
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Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt Academic Article
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Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia Academic Article
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Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements Academic Article
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Mitochondrial DNA analysis of sympatric morphotypes of bottlenose dolphins (genus: Tursiops) in Chinese waters Academic Article
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Mitochondrial DNA variation and genetic structure in populations of Drosophila melanogaster. Academic Article
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Molecular Cloning and Characterization of Tetrahydroprotoberberine cis-N-Methyltransferase, an Enzyme Involved in Alkaloid Biosynthesis in Opium Poppy Academic Article
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Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose Academic Article
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Molecular Markers Reveal Epidemiological Patterns and Evolutionary Histories of the Human Pathogenic Cryptococcus Academic Article
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Molecular Phylogeny of Living Xenarthrans and the Impact of Character and Taxon Sampling on the Placental Tree Rooting Academic Article
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Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs (Xenopus) Academic Article
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Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships Academic Article
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Molecular analysis of a 11 700-year-old rodent midden from the Atacama Desert, Chile Academic Article
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Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water Academic Article
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Molecular biology and modeling analysis reveal functional roles of propionate to acetate ratios on microbial syntrophy and competition in electro-assisted anaerobic digestion Academic Article
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Molecular caving Academic Article
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Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis Academic Article
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Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries Academic Article
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Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila Academic Article
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Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii Academic Article
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Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos Academic Article
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Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades Academic Article
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Molecular signatures for
Bacillus
species: demarcation of the
Bacillus subtilis
and
Bacillus cereus
clades in molecular terms and proposal to limit the placement of new species into the genus
Bacillus Academic Article
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Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia Academic Article
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Molecular signatures for the class
Coriobacteriia
and its different clades; proposal for division of the class
Coriobacteriia
into the emended order
Coriobacteriales
, containing the emended family
Coriobacteriaceae
and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov. Academic Article
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Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations Academic Article
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Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae Academic Article
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Molecular signatures for the phylum Synergistetes and some of its subclades Academic Article
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Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues Academic Article
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Molecular signatures that are distinctive characteristics of the vertebrates and chordates and supporting a grouping of vertebrates with the tunicates Academic Article
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Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes Conference Paper
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Morphological and molecular characterization of Orbilia pseudopolybrocha and O. tonghaiensis, two new species of Orbiliaceae from China Academic Article
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Morphological evaluation of spermatogenesis in Lake Magadi tilapia (Alcolapia grahami): A fish living on the edge Academic Article
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Multicopy gene family evolution on primate Y chromosomes Academic Article
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Multilocus Sequence Typing Reveals both Shared and Unique Genotypes of Cryptococcus neoformans in Jiangxi Province, China Academic Article
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Multilocus sequence analyses reveal extensive diversity and multiple origins of fluconazole resistance in Candida tropicalis from tropical China Academic Article
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Multilocus sequence typing ofCandida africanafrom patients with vulvovaginal candidiasis in New Delhi, India Academic Article
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Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti Academic Article
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Multiple gene genealogical analyses suggest divergence and recent clonal dispersal in the opportunistic human pathogen Candida guilliermondii Academic Article
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Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungusCryptococcus neoformans Academic Article
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Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population Academic Article
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Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD Academic Article
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Mycobacterial adenosine kinase is not a typical adenosine kinase Academic Article
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Mylodon darwinii DNA sequences from ancient fecal hair shafts Academic Article
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Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons Academic Article
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Natural Selection for Nucleotide Usage at Synonymous and Nonsynonymous Sites in Influenza A Virus Genes Academic Article
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Necessity and rationale for the proposed name changes in the classification of Mollicutes species. Reply to: ‘Recommended rejection of the names Malacoplasma gen. nov., Mesomycoplasma gen. nov., Metamycoplasma gen. nov., Metamycoplasmataceae fam. nov., Mycoplasmoidaceae fam. nov., Mycoplasmoidales ord. nov., Mycoplasmoides gen. nov., Mycoplasmopsis gen. nov. [Gupta, Sawnani, Adeolu, Alnajar and Oren 2018] and all proposed species comb. nov. placed therein’, by M. Balish et al. (Int J Syst Evol Microbiol, 2019;69:3650–3653) Academic Article
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New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance Academic Article
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Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants Academic Article
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Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae) Academic Article
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Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach’s storm-petrel Academic Article
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North American matsutake: names clarified and a new species described Academic Article
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Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium
Sinorhizobium meliloti Academic Article
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Novel Molecular Signatures in the PIP4K/PIP5K Family of Proteins Specific for Different Isozymes and Subfamilies Provide Important Insights into the Evolutionary Divergence of this Protein Family Academic Article
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Novel Molecular Synapomorphies Demarcate Different Main Groups/Subgroups of Plasmodium and Piroplasmida Species Clarifying Their Evolutionary Relationships Academic Article
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Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins Academic Article
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Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales Academic Article
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Nuclear Gene Sequences from a Late Pleistocene Sloth Coprolite Academic Article
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Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for
Fungi Academic Article
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Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes Academic Article
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OGRe: a relational database for comparative analysis of mitochondrial genomes Academic Article
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Occurrence of Virulence and Antimicrobial Resistance Genes in
Escherichia coli
Isolates from Different Aquatic Ecosystems within the St. Clair River and Detroit River Areas Academic Article
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Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila Academic Article
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Optimization of culturing conditions for toxicity testing with the algaOophilasp. (Chlorophyceae), an amphibian endosymbiont Academic Article
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Oral yeast flora and its ITS sequence diversity among a large cohort of medical students in Hainan, China Academic Article
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Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins Academic Article
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Origine des vertébrés : la tunique fait-elle le moine ? Academic Article
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals Academic Article
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OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics Academic Article
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Osteocalcin protein sequences of Neanderthals and modern primates Academic Article
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Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths Academic Article
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PCR–restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences inCandidaalbicans Academic Article
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Pan-African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’ Academic Article
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Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods Academic Article
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Partial characterization of the genome of nine animal caliciviruses Academic Article
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Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes Academic Article
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Patterns of Bacterial Gene Movement Academic Article
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Peripheral Chemoreceptors in Air- Versus Water- Breathers Chapter
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Pervasive Cryptic Epistasis in Molecular Evolution Academic Article
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Phenotypic Divergence along Geographic Gradients Reveals Potential for Rapid Adaptation of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans, in North America Academic Article
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PhyloExplorer: a web server to validate, explore and query phylogenetic trees Academic Article
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Phylogenetic Analysis of Mycoplasmas Based on Hsp70 Sequences: Cloning of the dnaK (hsp70) Gene Region of Mycoplasma capricolum Academic Article
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Phylogenetic Analysis of the Cytochrome P450 3 (CYP3) Gene Family Academic Article
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Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces Academic Article
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Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria Academic Article
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Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures Academic Article
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Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana Academic Article
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Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae) Academic Article
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Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives Academic Article
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Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus Academic Article
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Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing Academic Article
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Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. Academic Article
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Phylogenetic analysis of the caliciviruses Academic Article
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Phylogenetic analysis of the diacylglycerol kinase family of proteins and identification of multiple highly-specific conserved inserts and deletions within the catalytic domain that are distinctive characteristics of different classes of DGK homologs Academic Article
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Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family Academic Article
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Phylogenetic and environmental components of inter-specific variability in the antioxidant defense system in freshwater anomurans Aegla (Crustacea, Decapoda) Academic Article
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Phylogenetic and functional analyses of the cytochrome P450 family 4 Academic Article
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Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. Academic Article
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Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera Academic Article
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Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance Academic Article
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Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation Academic Article
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Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones Academic Article
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Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov. Academic Article
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Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I) Academic Article
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Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria) Academic Article
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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis Academic Article
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Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov. Academic Article
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Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera Academic Article
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Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family Academic Article
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Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov. Academic Article
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Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov. Academic Article
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Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria Academic Article
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Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups Academic Article
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Phylogenomics and the reconstruction of the tree of life Academic Article
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Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B Academic Article
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Phylogenomics: the beginning of incongruence? Academic Article
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Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species Academic Article
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Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades Academic Article
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Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups Academic Article
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Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae Academic Article
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Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov. Academic Article
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Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau Academic Article
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Physiological tradeoffs may underlie the evolution of hypoxia tolerance and exercise performance in sunfish (Centrarchidae) Conference Paper
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Plasmodium possesses dynein light chain classes that are unique and conserved across species Academic Article
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Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments Academic Article
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Polymerase chain reaction-based detection of bacteria in semen**Supported by grants from The Physicians' Services Incorporated Foundation, Toronto, Ontario, Canada (K.J, D.H., and M.W.M.). A Roscoe-Reid Graham Scholarship in Surgical Science and a Canadian Urology Association Scholarship, Toronto, Ontario, Canada is held by K.J. Academic Article
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Polymorphism of human papillomavirus type 31 isolates infecting the genital tract of HIV-seropositive and HIV-seronegative women at risk for HIV infection Academic Article
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Population Genetic Analyses of the Fungal Pathogen Colletotrichum fructicola on Tea-Oil Trees in China Academic Article
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Population Genetics Without Intraspecific Data Academic Article
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Population-specific incidence of testicular ovarian follicles in Xenopus laevis from South Africa: A potential issue in endocrine testing Academic Article
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Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data Academic Article
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Predicting biotic interactions and their variability in a changing environment Academic Article
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Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus Academic Article
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Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins Academic Article
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Prevalence of specific and phylogenetically closely related genotypes in the population of Candida albicans associated with genital candidiasis in China Academic Article
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Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada Academic Article
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Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes Academic Article
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Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution Academic Article
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Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution Academic Article
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Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase Academic Article
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Protein phylogenies and signature sequences: evolutionary relationships within prokaryotes and between prokaryotes and eukaryotes. Academic Article
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Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades Academic Article
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Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces a aThe GenBank accession numbers for the sequences reported in this paper are indicated in the text. Academic Article
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Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Academic Article
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Proteins of the Glycine Decarboxylase Complex in the Hydrogenosome of
Trichomonas vaginalis Academic Article
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RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods Academic Article
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RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences Academic Article
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RUNX2 tandem repeats and the evolution of facial length in placental mammals Academic Article
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Radical changes to chlamydial taxonomy are not necessary just yet. Academic Article
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Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus Academic Article
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Rank-based genome-wide analysis reveals the association of Ryanodine receptor-2 gene variants with childhood asthma among human populations Academic Article
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Rapid spatial learning in cooperative and non-cooperative cichlids Academic Article
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Rapidly Evolving Genes of Drosophila: Differing Levels of Selective Pressure in Testis, Ovary, and Head Tissues Between Sibling Species Academic Article
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Reconstructing the Prior Probabilities of Allelic Phylogenies Academic Article
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Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus) Academic Article
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Resolving the root of the avian mitogenomic tree by breaking up long branches Academic Article
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Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths) Academic Article
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Rh proteins and NH4+-activated Na+-ATPase in the Magadi tilapia (Alcolapia grahami), a 100% ureotelic teleost fish Academic Article
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Rifampin phosphotransferase is an unusual antibiotic resistance kinase Academic Article
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Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species Academic Article
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Robust demarcation of fourteen different species groups within the genus Streptococcus based on genome-based phylogenies and molecular signatures Academic Article
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Role of RpoS in the Virulence of
Citrobacter rodentium Academic Article
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Saffron Pre-Treatment Promotes Reduction in Tissue Inflammatory Profiles and Alters Microbiome Composition in Experimental Colitis Mice Academic Article
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Schistosoma mansoni albumin, a major defense against oxidative damage, was acquired by lateral gene transfer from a mammalian host Academic Article
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Searching for Substitution Rate Heterogeneity Academic Article
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Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849 Academic Article
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Selection and Slippage Creating Serine Homopolymers Academic Article
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Sequence evolution within populations under multiple types of mutation. Academic Article
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Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes Academic Article
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Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Academic Article
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Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans Academic Article
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Signature proteins for the major clades of Cyanobacteria Academic Article
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Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups Academic Article
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Signature proteins that are distinctive of alpha proteobacteria Academic Article
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Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. Academic Article
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Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients Conference Paper
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Simultaneous Viral Whole-Genome Sequencing and Differential Expression Profiling in Respiratory Syncytial Virus Infection of Infants Academic Article
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Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats Academic Article
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Slr4, a newly identified S‐layer protein from marine Gammaproteobacteria, is a major biofilm matrix component Academic Article
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Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation Academic Article
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Species and Genotypic Diversities and Similarities of Pathogenic Yeasts Colonizing Women Academic Article
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Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory Academic Article
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Statistical models and computational algorithms for discovering relationships in microbiome data Academic Article
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Statistical universals reveal the structures and functions of human music Academic Article
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Stem responses to damage: the evolutionary ecology of
Quercus
species in contrasting fire regimes Academic Article
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Structural Insights Into PfARO and Characterization of its Interaction With PfAIP Academic Article
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Structural and Functional Plasticity of Antibiotic Resistance Nucleotidylyltransferases Revealed by Molecular Characterization of Lincosamide Nucleotidylyltransferases Lnu(A) and Lnu(D) Academic Article
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Structural and functional studies of an IRF-7-like gene from Atlantic salmon Academic Article
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Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor Academic Article
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Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d Academic Article
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Structure, Gene Flow, and Recombination among Geographic Populations of a Russula virescens Ally from Southwestern China Academic Article
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Structure, expression and phylogenetic analysis of the glycoprotein gene of Cocal virus Academic Article
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Substitution rate variation in closely related rodent species Academic Article
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Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events Academic Article
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Taxonomy of the order Mononegavirales: update 2016 Academic Article
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Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada Academic Article
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Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome Academic Article
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Tetrahymena glochidiophila n. sp., a new species of Tetrahymena (Ciliophora) that causes mortality to glochidia larvae of freshwater mussels (Bivalvia) Academic Article
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Thaxtomin A-deficient endophytic Streptomyces sp. enhances plant disease resistance to pathogenic Streptomyces scabies Academic Article
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The Closest BLAST Hit Is Often Not the Nearest Neighbor Academic Article
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The Conserved Tetratricopeptide Repeat-Containing C-Terminal Domain of Pseudomonas aeruginosa FimV Is Required for Its Cyclic AMP-Dependent and -Independent Functions Academic Article
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The Cytochrome P450 Superfamily Complement (CYPome) in the Annelid Capitella teleta Academic Article
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The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair Academic Article
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The Divided Bacterial Genome: Structure, Function, and Evolution Academic Article
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The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes Academic Article
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The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia Academic Article
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The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance Academic Article
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The Genetic Secrets Some Fossils Hold Academic Article
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The Location of Substitutions and Bacterial Genome Arrangements Academic Article
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The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes Academic Article
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The Natural Evolutionary Relationships among Prokaryotes Academic Article
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The Pattern of Amino Acid Replacements in α/β-Barrels Academic Article
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The Phylogeny and Signature Sequences Characteristics ofFibrobacteres,Chlorobi, andBacteroidetes Academic Article
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The Pipid Root Academic Article
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The Recovery, Interpretation and Use of Ancient Pathogen Genomes Academic Article
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The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes Academic Article
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The Rift Valley is a major barrier to dispersal of African clawed frogs (Xenopus) in Ethiopia Academic Article
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The Role of Palmitoylation for Protein Recruitment to the Inner Membrane Complex of the Malaria Parasite Academic Article
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The Selective Cause of an Ancient Adaptation Academic Article
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The Unique Lifestyle of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Academic Article
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The advantages and disadvantages of horizontal gene transfer and the emergence of the first species Academic Article
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The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins Academic Article
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The cytochrome P450 (CYP) superfamily in cnidarians Academic Article
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The detection of deleterious selection using ancestors inferred from a phylogenetic history Academic Article
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The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans. Academic Article
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The effects of environmental and genetic factors on the germination of basidiospores in the Cryptococcus gattii species complex Academic Article
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The evolution of substrate discrimination in macrolide antibiotic resistance enzymes Academic Article
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The evolution of the class A scavenger receptors Academic Article
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The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis Academic Article
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The fate of laterally transferred genes: Life in the fast lane to adaptation or death Academic Article
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The mosaic nature of the eukaryotic nucleus Academic Article
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The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances Academic Article
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The origin of the eukaryotic cell Academic Article
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The paradox of HBV evolution as revealed from a 16th century mummy Academic Article
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The phylogenetic affinities of the extinct glyptodonts Academic Article
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The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes Academic Article
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The role of laterally transferred genes in adaptive evolution Academic Article
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The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria Academic Article
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The structural basis of molecular adaptation Academic Article
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The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division The GenBank accession numbers for the sequences reported in this paper are AY017380, AY017381, AY017382 and AY017383. Academic Article
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Thrice better than once: quality control guidelines to validate new mitogenomes Academic Article
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Timings of major glaciations, inherent selection schemes and the origins of cold hardy animal phyla. Academic Article
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Tracking Host Sources of
Cryptosporidium
spp. in Raw Water for Improved Health Risk Assessment Academic Article
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Transmission of HIV and HCV within Former Soviet Union Countries Academic Article
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Trends in DNA barcoding and metabarcoding Academic Article
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Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny Academic Article
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Tunicates and not cephalochordates are the closest living relatives of vertebrates Academic Article
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Two new unusualLeucoagaricusspecies (Agaricaceae) from tropical China with blue-green staining reactions Academic Article
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Uncovering rate variation of lateral gene transfer during bacterial genome evolution Academic Article
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Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes Academic Article
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Upregulating Nrf2-dependent antioxidant defenses in Pacific oysters Crassostrea gigas: Investigating the Nrf2/Keap1 pathway in bivalves Academic Article
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Using a Nonrecursive Formula to Determine Cladogram Probabilities Academic Article
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Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods Academic Article
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World-wide genetic differentiation ofEubalaena: questioning the number of right whale species Academic Article
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Xenopus fraseri: Mr. Fraser, where did your frog come from? Academic Article
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Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis Academic Article
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Yersinia pestis and the three plague pandemics–Authors' reply Academic Article
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Yersinia pestis: New Evidence for an Old Infection Academic Article
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[Soil microbial diversity of artificial peashrub plantation on North Loess Plateau of China]. Academic Article
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markophylo: Markov chain analysis on phylogenetic trees Academic Article