Phylogeny
Concept
Vocabulary Service
Overview
subject area of
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'Outlier' lipocalins more than peripheral Journal Articles
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17th Century Variola Virus Reveals the Recent History of Smallpox Journal Articles
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Sequence Note: Molecular Epidemiological Analysis of Human Immunodeficiency Virus Type 1 in Newfoundland, Canada Journal Articles
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Burkholderia
from Fungus Gardens of Fungus-Growing Ants Produces Antifungals That Inhibit the Specialized Parasite
Escovopsis Journal Articles
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Helicobacter apodemussp. nov., a newHelicobacterspecies identified from the gastrointestinal tract of striped field mice in Korea Journal Articles
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Torulaspora quercuumâ sp. nov. andCandida pseudohumilisâ sp. nov., novel yeasts from human and forest habitats Journal Articles
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d
-Ala-
d
-Ala ligases from glycopeptide antibiotic-producing organisms are highly homologous to the enterococcal vancomycin-resistance ligases VanA and VanB Journal Articles
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A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade Journal Articles
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A Catalog of Reference Genomes from the Human Microbiome Journal Articles
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A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods Journal Articles
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A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches Journal Articles
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A Highly Unstable Recent Mutation in Human mtDNA Journal Articles
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A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals Journal Articles
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A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information Journal Articles
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A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan
Tetrahymena thermophila Journal Articles
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A T-to-G Transversion at Nucleotide −567 Upstream of HBG2 in a GATA-1 Binding Motif Is Associated with Elevated Hemoglobin F Journal Articles
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A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism Journal Articles
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A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads Journal Articles
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A comparative study of an innate immune response in Lamprologine cichlid fishes Journal Articles
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A comprehensive genomic history of extinct and living elephants Journal Articles
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A comprehensive study of genic variation in natural populations of Drosophila melanogaster. IV. Mitochondrial DNA variation and the role of history vs. selection in the genetic structure of geographic populations. Journal Articles
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A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis‐specific lipid A Journal Articles
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A draft genome of Yersinia pestis from victims of the Black Death Journal Articles
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A functionally divergent hydrogenosomal peptidase with protomitochondrial ancestry Journal Articles
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A genomic catalog of Earth’s microbiomes Journal Articles
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A high‐quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation Journal Articles
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A maximum likelihood approach to the detection of selection from a phylogeny Journal Articles
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A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution Journal Articles
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A new fossil assemblage shows that large angiosperm trees grew in North America by the Turonian (Late Cretaceous) Journal Articles
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A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution Journal Articles
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A phylogenetic analysis based on the gene encoding phosphoglycerate kinase Journal Articles
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A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history Journal Articles
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A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov. Journal Articles
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A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex) Journal Articles
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A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives Journal Articles
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A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia Journal Articles
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A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera Journal Articles
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A phylogenomic framework and timescale for comparative studies of tunicates Journal Articles
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A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov. Journal Articles
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A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades Journal Articles
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A spliceosomal intron in
Giardia
lamblia Journal Articles
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ANATOMIC ASYMMETRY IN THE TEMPORAL LOBES: ITS DOCUMENTATION, PHYLOGENESIS, AND RELATIONSHIP TO FUNCTIONAL ASYMMETRY* Journal Articles
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AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology Journal Articles
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Abundance and community composition of comammox bacteria in different ecosystems by a universal primer set Journal Articles
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Abundant sequence variation around the mitochondrial origin of replication in the human opportunistic yeast pathogen Candida albicans from a tropical island in China Journal Articles
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Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates Journal Articles
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Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities Journal Articles
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Additional molecular support for the new chordate phylogeny Journal Articles
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Adenosine kinase and ribokinase – the RK family of proteins Journal Articles
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Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses Journal Articles
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Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity Journal Articles
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Alignment/Phylogeny of the Papain Superfamily of Cysteine Proteases Journal Articles
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Amplification and sequencing of DNA from a 120–135-million-year-old weevil Journal Articles
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An Assessment of Sub-Meter Scale Spatial Variability of Arcellinida (Testate Lobose Amoebae) Assemblages in a Temperate Lake: Implications for Limnological Studies Journal Articles
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An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity Journal Articles
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An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli Journal Articles
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An evolutionary model for the insect vitellins Journal Articles
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An unusual myosuppressin from the blood-feeding bugRhodnius prolixus Journal Articles
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An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Journal Articles
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Analyses of the Global Multilocus Genotypes of the Human Pathogenic Yeast Cryptococcus neoformans Species Complex Journal Articles
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Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes Journal Articles
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Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain Journal Articles
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Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus) Journal Articles
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Ancient Antibiotics, Ancient Resistance Journal Articles
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Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains Journal Articles
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Ancient DNA Journal Articles
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Ancient DNA and the tropics: a rodent's tale Journal Articles
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Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics Journal Articles
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Ancient Mitogenomes Reveal the Evolutionary History and Biogeography of Sloths Journal Articles
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Ancient Tripartite Coevolution in the Attine Ant-Microbe Symbiosis Journal Articles
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Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array Journal Articles
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Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta) Journal Articles
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Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia Journal Articles
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AnnoTree: visualization and exploration of a functionally annotated microbial tree of life Journal Articles
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Antagonistic Bacterial Interactions Help Shape Host-Symbiont Dynamics within the Fungus-Growing Ant-Microbe Mutualism Journal Articles
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Antibiotic resistance is ancient Journal Articles
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AppIndels.com server: a web-based tool for the identification of known taxon-specific conserved signature indels in genome sequences. Validation of its usefulness by predicting the taxonomic affiliation of >700 unclassified strains of Bacillus species Journal Articles
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Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions Journal Articles
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Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons? Journal Articles
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Armadillos exhibit less genetic polymorphism in North America than in South America: nuclear and mitochondrial data confirm a founder effect in Dasypus novemcinctus (Xenarthra) Journal Articles
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Army Ants Trapped by Their Evolutionary History Journal Articles
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Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections Journal Articles
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Association between Pseudonocardia symbionts and Atta leaf-cutting ants suggested by improved isolation methods. Journal Articles
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Asymmetrical Evolution of Cytochrome bd Subunits Journal Articles
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Autoecological Approaches to Resolve Subjective Taxonomic Divisions within Arcellacea Journal Articles
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Bacillus DNA in fossil bees: an ancient symbiosis? Journal Articles
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Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System Journal Articles
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Bacterial biogeography of the human digestive tract Journal Articles
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Bats and Coronaviruses Journal Articles
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Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution Journal Articles
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Beltrania sinensis sp. nov., an endophytic fungus from China and a key to species of the genus Journal Articles
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Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes Journal Articles
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Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites Journal Articles
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CLONING AND CHARACTERIZATION OF AN mRNA ENCODING AN INSULIN RECEPTOR FROM THE HORNED SCARAB BEETLE Onthophagus nigriventris (COLEOPTERA: SCARABAEIDAE) Journal Articles
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Candida auris on Apples: Diversity and Clinical Significance Journal Articles
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Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling Journal Articles
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Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co‐occur onJavaIsland,Indonesia Journal Articles
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Cellulolytic Streptomyces Strains Associated with Herbivorous Insects Share a Phylogenetically Linked Capacity To Degrade Lignocellulose Journal Articles
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Characterization and assessment of an avian repetitive DNA sequence as an icterid phylogenetic marker Journal Articles
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Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil Journal Articles
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Characterization of Class I– and Class II–Like Major Histocompatibility Complex Loci in Pedigrees of North Atlantic Right Whales Journal Articles
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Characterization of a Rifampin-Inactivating Glycosyltransferase from a Screen of Environmental Actinomycetes Journal Articles
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Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase Journal Articles
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Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity Journal Articles
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Chemical Analyses of Wasp-Associated Streptomyces Bacteria Reveal a Prolific Potential for Natural Products Discovery Journal Articles
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Chimeric Structure of the NAD(P)+- and NADP+-dependent Malic Enzymes ofRhizobium (Sinorhizobium) meliloti Journal Articles
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Chitinase genes (
CHIA
s) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals Journal Articles
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Chlamydiae-specific proteins and indels: novel tools for studies Journal Articles
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Clades of huge phages from across Earth’s ecosystems Journal Articles
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Clinical and tree hollow populations of human pathogenic yeast in Hamilton, Ontario, Canada are different Journal Articles
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Clonal Genotype of Geomyces destructans among Bats with White Nose Syndrome, New York, USA Journal Articles
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Clonal and Spontaneous Origins of Fluconazole Resistance in
Candida albicans Journal Articles
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Cloning and Some Novel Characteristics of Mitochondrial Hsp70 from Chinese Hamster Cells Journal Articles
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Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Journal Articles
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Cloning of the hsp70 (dnaK) genes from Rhizobium meliloti and Pseudomonas cepacia: phylogenetic analyses of mitochondrial origin based on a highly conserved protein sequence Journal Articles
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Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes Journal Articles
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Coevolved Crypts and Exocrine Glands Support Mutualistic Bacteria in Fungus-Growing Ants Journal Articles
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Cold-Active Winter Rye Glucanases with Ice-Binding Capacity Journal Articles
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Comment on "Hexapod Origins: Monophyletic or Paraphyletic?" Journal Articles
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Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum Journal Articles
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Common biosynthetic origins for polycyclic tetramate macrolactams from phylogenetically diverse bacteria Journal Articles
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Comparative Gene Genealogies Indicate that Two Clonal Lineages ofCryptococcus gattiiin British Columbia ResembleStrains from Other Geographical Areas Journal Articles
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Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution Journal Articles
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Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness Journal Articles
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Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes Journal Articles
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Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans Journal Articles
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Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants Journal Articles
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Comparative molecular phylogeography of two Xenopus species, X. gilli and X. laevis, in the south‐western Cape Province, South Africa Journal Articles
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Comparative proteome analysis of Acidaminococcus intestini supports a relationship between outer membrane biogenesis in Negativicutes and Proteobacteria Journal Articles
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Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities Journal Articles
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Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability Journal Articles
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Comparison of biochemical and genotypic speciation methods for vancomycin-resistant enterococci isolated from urban wastewater treatment plants Journal Articles
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Comparison of fecal biota from specific pathogen free and feral mice Journal Articles
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Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris Journal Articles
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Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths Journal Articles
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Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation Journal Articles
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Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools Journal Articles
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Complex host-pathogen coevolution in the Apterostigma fungus-growing ant-microbe symbiosis. Journal Articles
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Conserved Molecular Signatures in the Spike, Nucleocapsid, and Polymerase Proteins Specific for the Genus Betacoronavirus and Its Different Subgenera Journal Articles
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Conserved Signatures in Protein Sequences Reliably Demarcate Different Clades of Rodents/Glires Species and Consolidate Their Evolutionary Relationships Journal Articles
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Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria Journal Articles
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Constraining the Time Interval for the Origin of Life on Earth Journal Articles
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Control of breathing and adaptation to high altitude in the bar-headed goose Journal Articles
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Convergence of gut microbiomes in myrmecophagous mammals Journal Articles
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Convergent Bacterial Microbiotas in the Fungal Agricultural Systems of Insects Journal Articles
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Convergent evolution of complex structures for ant–bacterial defensive symbiosis in fungus-farming ants Journal Articles
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Corticosteroid receptor gene expression is related to sex and social behaviour in a social fish Journal Articles
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Critical Issues in Bacterial Phylogeny Journal Articles
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Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age Journal Articles
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DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms Journal Articles
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DNA methylation predicts age and provides insight into exceptional longevity of bats Journal Articles
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Dating the Ngandong Humans Journal Articles
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Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes Journal Articles
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Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum Journal Articles
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Detecting recent speciation events: the case of the finless porpoise (genus Neophocaena) Journal Articles
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Development and Evaluation of a Molecular Hepatitis A Virus Assay for Serum and Stool Specimens Journal Articles
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Development of Real-Time PCR Assays for Detection of the
Streptococcus milleri
Group from Cystic Fibrosis Clinical Specimens by Targeting the
cpn60
and 16S rRNA Genes Journal Articles
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Differential Y‐chromosome Anatolian Influences on the Greek and Cretan Neolithic Journal Articles
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Directionality in the evolution of influenza A haemagglutinin Journal Articles
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Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella Journal Articles
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Dispersers shape fruit diversity in
Ficus
(Moraceae) Journal Articles
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Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432) Journal Articles
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Distinctive Protein Signatures Provide Molecular Markers and Evidence for the Monophyletic Nature of the
Deinococcus-Thermus
Phylum Journal Articles
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Diurnal Floc Generation from Neuston Biofilms in Two Contrasting Freshwater Lakes Journal Articles
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Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeast Cryptococcus gattii Journal Articles
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Divergent respiratory and cardiovascular responses to hypoxia in bar-headed geese and Andean birds Journal Articles
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Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus) Journal Articles
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Diversification of Wolbachia Endosymbiont in the Culex pipiens Mosquito Journal Articles
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Diversity Considerations in HIV-1 Vaccine Selection Journal Articles
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Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries) Journal Articles
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Diversity and relationships among strains of culturable yeasts in agricultural soils in Cameroon Journal Articles
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Diversity of Rotavirus Strains Circulating in Botswana before and after introduction of the Monovalent Rotavirus Vaccine Journal Articles
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Diversity of commensal yeasts within and among healthy hosts Journal Articles
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Diversity, Dispersal and Mode of Reproduction of Amanita exitialis in Southern China Journal Articles
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Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717) Journal Articles
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Draft genome of the globally widespread and invasive Argentine ant (
Linepithema humile
) Journal Articles
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Draft genome of the red harvester ant
Pogonomyrmex barbatus Journal Articles
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Drainage isolation and climate change-driven population expansion shape the genetic structures of Tuber indicum complex in the Hengduan Mountains region Journal Articles
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Dynamic evolution of eukaryotic mitochondrial and nuclear genomes: a case study in the gourmet pine mushroom Tricholoma matsutake Journal Articles
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EPHEMERAL WINDOWS OF OPPORTUNITY FOR HORIZONTAL TRANSMISSION OF FUNGAL SYMBIONTS IN LEAF-CUTTING ANTS Journal Articles
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EVOLUTION OF THE CLOSELY RELATED, SEX-RELATED GENES DM-W AND DMRT1 IN AFRICAN CLAWED FROGS (XENOPUS) Journal Articles
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Ecological Genomics of Marine Roseobacters Journal Articles
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Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps) Journal Articles
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Emergence, continuity, and evolution of Yersinia pestis throughout medieval and early modern Denmark Journal Articles
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Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks Journal Articles
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Environmental and nutritional regulation of expression and function of two peptide transporter (PepT1) isoforms in a euryhaline teleost Journal Articles
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Enzyme Evolution Explained (Sort Of) Journal Articles
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Erratum to “Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms” [Phytochemistry 66 (2005) 1374–1393] Journal Articles
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Estimating Maximum Likelihood Phylogenies with PhyML Journal Articles
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Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss Journal Articles
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Evidence for Inbreeding and Genetic Differentiation among Geographic Populations of the Saprophytic Mushroom Trogia venenata from Southwestern China Journal Articles
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Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes to
Giardia
lamblia
and
Entamoeba
histolytica Journal Articles
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Evidence for local DNA influences on patterns of substitutions in the human α-interferon gene family Journal Articles
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Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms Journal Articles
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Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms. Journal Articles
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Evidence for the presence of key chlorophyll-biosynthesis-related proteins in the genus Rubrobacter (Phylum Actinobacteria) and its implications for the evolution and origin of photosynthesis Journal Articles
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Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants Journal Articles
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Evidence of unique genetic diversity in Aspergillus fumigatus isolates from Cameroon Journal Articles
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Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila Journal Articles
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Evolution of
Drosophila
sex comb length illustrates the inextricable interplay between selection and variation Journal Articles
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Evolution of Allosteric Control in Glycogen Phosphorylase Journal Articles
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Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia Journal Articles
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Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes Journal Articles
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Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression Journal Articles
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Evolution of Proteasome Regulators in Eukaryotes Journal Articles
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Evolution of RAG-1 in Polyploid Clawed Frogs Journal Articles
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Evolution of genes and genomes on the Drosophila phylogeny Journal Articles
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Evolution of mitochondrial-encoded cytochrome oxidase subunits in endothermic fish: The importance of taxon-sampling in codon-based models Journal Articles
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Evolution of the Largest Mammalian Genome Journal Articles
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Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria Journal Articles
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Evolution of the chaperonin families (HSP60, HSP 10 and TCP‐1) of proteins and the origin of eukaryotic cells Journal Articles
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Evolution of the nuclear-encoded cytochrome oxidase subunits in vertebrates Journal Articles
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Evolution-guided discovery of antibiotics that inhibit peptidoglycan remodelling Journal Articles
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Evolutionary affinity of billfishes (Xiphiidae and Istiophoridae) and flatfishes (Plueronectiformes): Independent and trans-subordinal origins of endothermy in teleost fishes Journal Articles
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Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta Journal Articles
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Evolutionary and Functional Analyses of the Interaction between the Myeloid Restriction Factor SAMHD1 and the Lentiviral Vpx Protein Journal Articles
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Evolutionary and functional diversity of the Pseudomonas type IVa pilin island Journal Articles
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Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales Journal Articles
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Evolutionary rate variation withinMus APRT Journal Articles
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Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis Journal Articles
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Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle Journal Articles
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Expanding the soil antibiotic resistome: exploring environmental diversity Journal Articles
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Exploratory analysis of multiple sequence alignments using phylogenies Journal Articles
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Exploring the Potential for Actinobacteria as Defensive Symbionts in Fungus-Growing Termites Journal Articles
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Expressed sequence tags from the Yukon ecotype of Thellungiella
reveal that gene expression in response to cold, drought and salinity
shows little overlap Journal Articles
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Extensive Genetic Diversity and Widespread Azole Resistance in Greenhouse Populations of Aspergillus fumigatus in Yunnan, China Journal Articles
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Extracting Haplotypes from Diploid Organisms Journal Articles
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Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences Journal Articles
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Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error Journal Articles
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Fate of Cd during Microbial Fe(III) Mineral Reduction by a Novel and Cd-Tolerant Geobacter Species Journal Articles
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First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins Journal Articles
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Fish gill morphology: inside out Journal Articles
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Fossil Rhabdoviral Sequences Integrated into Arthropod Genomes: Ontogeny, Evolution, and Potential Functionality Journal Articles
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Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun Journal Articles
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Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization Journal Articles
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Functional Divergence in the Arabidopsis -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States Journal Articles
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Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome Journal Articles
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Functional analysis of CfSnf1 in the development and pathogenicity of anthracnose fungus Colletotrichum fructicola on tea-oil tree Journal Articles
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Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences Journal Articles
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Fungal mitochondrial genomes and genetic polymorphisms Journal Articles
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Fungal species concepts in the genomics era Journal Articles
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Galactitol catabolism in Sinorhizobium meliloti is dependent on a chromosomally encoded sorbitol dehydrogenase and a pSymB-encoded operon necessary for tagatose catabolism Journal Articles
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Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat? Journal Articles
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Gene duplication and divergence produce divergent MHC genotypes without disassortative mating Journal Articles
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Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing Journal Articles
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Genetic Analyses from Ancient DNA Journal Articles
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Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens Journal Articles
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Genetic Diversity of Dahongjun, the Commercially Important “Big Red Mushroom” from Southern China Journal Articles
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Genetic Structure of Herpetofauna on Halmahera Island, Indonesia: Implications for Aketajawe‐Lolobata National Park Journal Articles
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Genetic Tracking of the Raccoon Variant of Rabies Virus in Eastern North America Journal Articles
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Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria Journal Articles
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Genetic differentiation, recombination and clonal expansion in environmental populations of Cryptococcus gattii in India Journal Articles
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Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China Journal Articles
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Genetic risk for dengue hemorrhagic fever and dengue fever in multiple ancestries Journal Articles
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Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West and Central Africa Journal Articles
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Genome duplication events have led to a diversification in the CPT I gene family in fish Journal Articles
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Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes Journal Articles
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Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family Journal Articles
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Genome structure and gene content in protist mitochondrial DNAs Journal Articles
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Genome-Scale Phylogeny and the Detection of Systematic Biases Journal Articles
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Genome-Wide Identification and Expression Analysis of Udp-Glucuronosyltransferases in the Whitefly Bemisia Tabaci (Gennadius) (HemipterA: Aleyrodidae) Journal Articles
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Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Journal Articles
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Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov. Journal Articles
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Genomic Analyses Identify Novel Molecular Signatures Specific for the Caenorhabditis and other Nematode Taxa Providing Novel Means for Genetic and Biochemical Studies Journal Articles
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Genomic Minimalism in the Early Diverging Intestinal Parasite
Giardia lamblia Journal Articles
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Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum Journal Articles
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Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress Journal Articles
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Genomic diversification of the specialized parasite of the fungus-growing ant symbiosis Journal Articles
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Genomic insights into the evolution and ecology of botulinum neurotoxins Journal Articles
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Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene Journal Articles
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Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria Journal Articles
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Genomics of Loa loa, a Wolbachia-free filarial parasite of humans Journal Articles
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Genotypic diversity and antifungal susceptibility of environmental isolates of Cryptococcus neoformans from the Yangtze River Delta region of East China Journal Articles
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Greenhouses represent an important evolutionary niche for
Alternaria alternata Journal Articles
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HSP70 phylogeny and the relationship between archaebacteria, eubacteria, and eukaryotes Journal Articles
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HYBRIDIZATION AND POPULATION GENETICS OF TWO MACAQUE SPECIES IN SULAWESI, INDONESIA Journal Articles
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Have wing morphology or flight kinematics evolved for extreme high altitude migration in the bar-headed goose? Journal Articles
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Helicokinin alters ion transport in the secondary cell-containing region of the Malpighian tubule of the larval cabbage looper Trichoplusia ni Journal Articles
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Heterologous Complementation Reveals a Specialized Activity for BacA in the Medicago–Sinorhizobium meliloti Symbiosis Journal Articles
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Heterotachy and long-branch attraction in phylogenetics Journal Articles
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High inbreeding, limited recombination and divergent evolutionary patterns between two sympatric morel species in China Journal Articles
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Human symbionts inject and neutralize antibacterial toxins to persist in the gut Journal Articles
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Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin Journal Articles
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INVITED REVIEW: Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances Journal Articles
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Identification and characterization of the proteolytic flagellin from the common freshwater bacterium Hylemonella gracilis Journal Articles
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Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish Journal Articles
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Identification of a Hydroxyproline Transport System in the Legume Endosymbiont Sinorhizobium meliloti Journal Articles
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Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor Journal Articles
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Identification of a Novel Hepatitis C Virus Genotype From Punjab, India: Expanding Classification of Hepatitis C Virus Into 8 Genotypes Journal Articles
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Identification of a conserved 8 aa insert in the PIP5K protein in the Saccharomycetaceae family of fungi and the molecular dynamics simulations and structural analysis to investigate its potential functional role Journal Articles
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Identification of a diphtheria toxin‐like gene family beyond the Corynebacterium genus Journal Articles
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Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups Journal Articles
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Identification of numerous hepatitis C virus genotypes in Montreal, Canada Journal Articles
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Identification of the putative goldfish (Carassius auratus) magnesium transporter SLC41a1 and functional regulation in the gill, kidney, and intestine in response to dietary and environmental manipulations Journal Articles
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Identification, spatial expression analysis and functional characterization of a pyrokinin-1 receptor in the Chagas’ disease vector, Rhodnius prolixus Journal Articles
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Identifying producers of antibacterial compounds by screening for antibiotic resistance Journal Articles
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Immunological features of bats: resistance and tolerance to emerging viruses Journal Articles
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Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification Journal Articles
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Incidence of elephant endotheliotropic herpesvirus in Asian elephants in India Journal Articles
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Increase in Carbohydrate Utilization in High-Altitude Andean Mice Journal Articles
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Indole-3-Acetic Acid Production by Endophytic Streptomyces sp. En-1 Isolated from Medicinal Plants Journal Articles
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Infants’ First Solid Foods: Impact on Gut Microbiota Development in Two Intercontinental Cohorts Journal Articles
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Inferring Bacterial Genome Flux While Considering Truncated Genes Journal Articles
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Inferring sequence regions under functional divergence in duplicate genes Journal Articles
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Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. Journal Articles
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Insulin signaling and limb-patterning: candidate pathways for the origin and evolutionary diversification of beetle ‘horns’ Journal Articles
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Integrated gene and species phylogenies from unaligned whole
genome protein sequences Journal Articles
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Interaction between Workers during a Short Time Window Is Required for Bacterial Symbiont Transmission in Acromyrmex Leaf-Cutting Ants Journal Articles
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Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity Journal Articles
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Interspecies Recombination Contributes Minimally to Fluoroquinolone Resistance in
Streptococcus pneumoniae Journal Articles
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Interspecific variation in hypoxia tolerance and hypoxia acclimation responses in killifish from the family Fundulidae Journal Articles
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Iron-Dependent Hydrogenases ofEntamoeba histolyticaandGiardia lamblia:Activity of the Recombinant Entamoebic Enzyme and Evidence for Lateral Gene Transfer Journal Articles
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Is Antigenic Sin Always “Original?” Re-examining the Evidence Regarding Circulation of a Human H1 Influenza Virus Immediately Prior to the 1918 Spanish Flu Journal Articles
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Is there convergence in the molecular pathways underlying the repeated evolution of sociality in African cichlids? Journal Articles
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Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites Journal Articles
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Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth Journal Articles
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Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production Journal Articles
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It’s Not Easy Being Blue: Are There Olfactory and Visual Trade-Offs in Plant Signalling? Journal Articles
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JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL Journal Articles
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Laboratory Characterization of Methicillin‐ResistantStaphylococcus aureusin Canadian Hospitals: Results of 5 Years of National Surveillance, 1995–1999 Journal Articles
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Large freshwater phages with the potential to augment aerobic methane oxidation Journal Articles
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits Journal Articles
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Latent homologues for the neural crest as an evolutionary novelty Journal Articles
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Lateral Gene Transfer Dynamics in the Ancient Bacterial GenusStreptomyces Journal Articles
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Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae Journal Articles
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Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis Journal Articles
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Les datations moléculaires à l’heure de la génomique Journal Articles
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Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals Journal Articles
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Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens Journal Articles
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Life history evolution in cichlids 1: revisiting the evolution of life histories in relation to parental care Journal Articles
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Life history evolution in cichlids 2: directional evolution of the trade-off between egg number and egg size Journal Articles
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Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function Journal Articles
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Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations Conferences
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Low host–pathogen specificity in the leaf-cutting ant–microbe symbiosis Journal Articles
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Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach Journal Articles
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Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni Journal Articles
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Metabolomic-guided discovery of cyclic nonribosomal peptides from Xylaria ellisii sp. nov., a leaf and stem endophyte of Vaccinium angustifolium Journal Articles
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens Journal Articles
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Microbial Diversity and Host-Specific Sequences of Canada Goose Feces Journal Articles
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Microbial Geoengineers Journal Articles
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Microbial systematics in the post-genomics era Journal Articles
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Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt Journal Articles
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Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements Journal Articles
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Mitochondrial DNA analysis of sympatric morphotypes of bottlenose dolphins (genus: Tursiops) in Chinese waters Journal Articles
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Mitochondrial DNA variation and genetic structure in populations of Drosophila melanogaster. Journal Articles
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Molecular Cloning and Characterization of Tetrahydroprotoberberine cis-N-Methyltransferase, an Enzyme Involved in Alkaloid Biosynthesis in Opium Poppy Journal Articles
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Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose Journal Articles
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Molecular Markers Reveal Epidemiological Patterns and Evolutionary Histories of the Human Pathogenic Cryptococcus Journal Articles
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Molecular Phylogeny of Living Xenarthrans and the Impact of Character and Taxon Sampling on the Placental Tree Rooting Journal Articles
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Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs <b><i>(Xenopus)</i></b> Journal Articles
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Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships Journal Articles
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Molecular analysis of a 11 700‐year‐old rodent midden from the Atacama Desert, Chile Journal Articles
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Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water Journal Articles
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Molecular biology and modeling analysis reveal functional roles of propionate to acetate ratios on microbial syntrophy and competition in electro-assisted anaerobic digestion Journal Articles
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Molecular caving Journal Articles
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Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis Journal Articles
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Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries Journal Articles
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Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila Journal Articles
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Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii Journal Articles
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Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos Journal Articles
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Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades Journal Articles
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Molecular signatures for
Bacillus
species: demarcation of the
Bacillus subtilis
and
Bacillus cereus
clades in molecular terms and proposal to limit the placement of new species into the genus
Bacillus Journal Articles
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Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia Journal Articles
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Molecular signatures for the class
Coriobacteriia
and its different clades; proposal for division of the class
Coriobacteriia
into the emended order
Coriobacteriales
, containing the emended family
Coriobacteriaceae
and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov. Journal Articles
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Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations Journal Articles
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Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae Journal Articles
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Molecular signatures for the phylum Synergistetes and some of its subclades Journal Articles
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Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues Journal Articles
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Molecular signatures that are distinctive characteristics of the vertebrates and chordates and supporting a grouping of vertebrates with the tunicates Journal Articles
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Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes Conferences
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Monkeypox in Montréal: Epidemiology, Phylogenomics, and Public Health Response to a Large North American Outbreak Journal Articles
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Morphological and molecular characterization of Orbilia pseudopolybrocha and O. tonghaiensis, two new species of Orbiliaceae from China Journal Articles
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Morphological evaluation of spermatogenesis in Lake Magadi tilapia (Alcolapia grahami): A fish living on the edge Journal Articles
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Multi-locus sequence typing and phylogenetics of Cryptococcus neoformans AD hybrids Journal Articles
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Multicopy gene family evolution on primate Y chromosomes Journal Articles
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Multilocus Sequence Typing Reveals both Shared and Unique Genotypes of Cryptococcus neoformans in Jiangxi Province, China Journal Articles
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Multilocus sequence analyses reveal extensive diversity and multiple origins of fluconazole resistance in Candida tropicalis from tropical China Journal Articles
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Multilocus sequence typing of Candida africana from patients with vulvovaginal candidiasis in New Delhi, India Journal Articles
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Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti Journal Articles
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Multiple gene genealogical analyses suggest divergence and recent clonal dispersal in the opportunistic human pathogen Candida guilliermondii Journal Articles
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Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans Journal Articles
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Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population Journal Articles
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Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD Journal Articles
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Mycobacterial adenosine kinase is not a typical adenosine kinase Journal Articles
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Mylodon darwinii DNA sequences from ancient fecal hair shafts Journal Articles
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Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons Journal Articles
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Natural Selection for Nucleotide Usage at Synonymous and Nonsynonymous Sites in Influenza A Virus Genes Journal Articles
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Necessity and rationale for the proposed name changes in the classification of Mollicutes species. Reply to: ‘Recommended rejection of the names Malacoplasma gen. nov., Mesomycoplasma gen. nov., Metamycoplasma gen. nov., Metamycoplasmataceae fam. nov., Mycoplasmoidaceae fam. nov., Mycoplasmoidales ord. nov., Mycoplasmoides gen. nov., Mycoplasmopsis gen. nov. [Gupta, Sawnani, Adeolu, Alnajar and Oren 2018] and all proposed species comb. nov. placed therein’, by M. Balish et al. (Int J Syst Evol Microbiol, 2019;69:3650–3653) Journal Articles
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New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance Journal Articles
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Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants Journal Articles
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Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae) Journal Articles
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Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach’s storm-petrel Journal Articles
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North American matsutake: names clarified and a new species described Journal Articles
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Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium
Sinorhizobium meliloti Journal Articles
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Novel Molecular Signatures in the PIP4K/PIP5K Family of Proteins Specific for Different Isozymes and Subfamilies Provide Important Insights into the Evolutionary Divergence of this Protein Family Journal Articles
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Novel Molecular Synapomorphies Demarcate Different Main Groups/Subgroups of Plasmodium and Piroplasmida Species Clarifying Their Evolutionary Relationships Journal Articles
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Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins Journal Articles
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Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales Journal Articles
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Nuclear Gene Sequences from a Late Pleistocene Sloth Coprolite Journal Articles
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Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for
Fungi Journal Articles
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Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes Journal Articles
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OGRe: a relational database for comparative analysis of mitochondrial genomes Journal Articles
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ORFcor: Identifying and Accommodating ORF Prediction Inconsistencies for Phylogenetic Analysis Journal Articles
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Occurrence of Virulence and Antimicrobial Resistance Genes in
Escherichia coli
Isolates from Different Aquatic Ecosystems within the St. Clair River and Detroit River Areas Journal Articles
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Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila Journal Articles
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Optimization of culturing conditions for toxicity testing with the algaOophilasp. (Chlorophyceae), an amphibian endosymbiont Journal Articles
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Oral yeast flora and its ITS sequence diversity among a large cohort of medical students in Hainan, China Journal Articles
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Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins Journal Articles
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Origine des vertébrés : la tunique fait-elle le moine ? Journal Articles
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals Journal Articles
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OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics Journal Articles
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Osteocalcin protein sequences of Neanderthals and modern primates Journal Articles
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Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths Journal Articles
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PCR–restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candidaalbicans Journal Articles
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Pan‐African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’ Journal Articles
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Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods Journal Articles
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Partial characterization of the genome of nine animal caliciviruses Journal Articles
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Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes Journal Articles
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Patterns of Bacterial Gene Movement Journal Articles
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Peripheral Chemoreceptors in Air- Versus Water- Breathers Chapters
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Pervasive Cryptic Epistasis in Molecular Evolution Journal Articles
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Phenotypic Divergence along Geographic Gradients Reveals Potential for Rapid Adaptation of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans, in North America Journal Articles
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PhyloExplorer: a web server to validate, explore and query phylogenetic trees Journal Articles
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Phylogenetic Analysis of Mycoplasmas Based on Hsp70 Sequences: Cloning of the dnaK (hsp70) Gene Region of Mycoplasma capricolum Journal Articles
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Phylogenetic Analysis of the Cytochrome P450 3 (CYP3) Gene Family Journal Articles
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Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces Journal Articles
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Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria Journal Articles
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Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures Journal Articles
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Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae) Journal Articles
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Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives Journal Articles
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Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus Journal Articles
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Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing Journal Articles
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Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. Journal Articles
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Phylogenetic analysis of the caliciviruses Journal Articles
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Phylogenetic analysis of the diacylglycerol kinase family of proteins and identification of multiple highly-specific conserved inserts and deletions within the catalytic domain that are distinctive characteristics of different classes of DGK homologs Journal Articles
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Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family Journal Articles
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Phylogenetic and environmental components of inter-specific variability in the antioxidant defense system in freshwater anomurans Aegla (Crustacea, Decapoda) Journal Articles
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Phylogenetic and functional analyses of the cytochrome P450 family 4 Journal Articles
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Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. Journal Articles
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Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera Journal Articles
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Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance Journal Articles
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Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation Journal Articles
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Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones Journal Articles
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Phylogenomic Analysis and Predicted Physiological Role of the Proton-Translocating NADH:Quinone Oxidoreductase (Complex I) Across Bacteria Journal Articles
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Phylogenomic Analysis of 155 Helminth Species Reveals Widespread Absence of Oxygen Metabolic Capacity Journal Articles
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Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov. Journal Articles
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Phylogenomic analyses of clostridia and identification of novel protein signatures that are specific to the genus Clostridium sensu stricto (cluster I) Journal Articles
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Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria) Journal Articles
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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis Journal Articles
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Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov. Journal Articles
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Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera Journal Articles
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Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov. Journal Articles
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Phylogenomic and molecular marker based studies to clarify the evolutionary relationships amongst Anoxybacillus species and demarcation of the family Anoxybacillaceae and some of its constituent genera. Journal Articles
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Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov. Journal Articles
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Phylogenomic and molecular markers based studies on clarifying the evolutionary relationships among Peptoniphilus species. Identification of several Genus-Level clades of Peptoniphilus species and transfer of some Peptoniphilus species to the genus Aedoeadaptatus Journal Articles
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Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family Journal Articles
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Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov. Journal Articles
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Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov. Journal Articles
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Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria Journal Articles
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Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups Journal Articles
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Phylogenomics and the reconstruction of the tree of life Journal Articles
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Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B Journal Articles
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Phylogenomics: the beginning of incongruence? Journal Articles
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Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species Journal Articles
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Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades Journal Articles
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Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups Journal Articles
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Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae Journal Articles
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Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov. Journal Articles
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Phylogeography and evolution of a fungal–insect association on theTibetanPlateau Journal Articles
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Physiological tradeoffs may underlie the evolution of hypoxia tolerance and exercise performance in sunfish (Centrarchidae) Conferences
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Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis Journal Articles
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Plasmodium possesses dynein light chain classes that are unique and conserved across species Journal Articles
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Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments Journal Articles
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Polymorphism of human papillomavirus type 31 isolates infecting the genital tract of HIV‐seropositive and HIV‐seronegative women at risk for HIV infection Journal Articles
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Population Genetic Analyses of the Fungal Pathogen Colletotrichum fructicola on Tea-Oil Trees in China Journal Articles
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Population Genetic Structure of Aldabra Giant Tortoises Journal Articles
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Population Genetics Without Intraspecific Data Journal Articles
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Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa Journal Articles
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Population-specific incidence of testicular ovarian follicles in Xenopus laevis from South Africa: A potential issue in endocrine testing Journal Articles
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Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data Journal Articles
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Predicting biotic interactions and their variability in a changing environment Journal Articles
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Predicting the recombination potential of severe acute respiratory syndrome coronavirus 2 and Middle East respiratory syndrome coronavirus Journal Articles
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Presence and Diversity of Streptomyces in Dendroctonus and Sympatric Bark Beetle Galleries Across North America Journal Articles
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Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins Journal Articles
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Prevalence of specific and phylogenetically closely related genotypes in the population of Candida albicans associated with genital candidiasis in China Journal Articles
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Primary HIV-1 Subtype C Infection in Ethiopia Journal Articles
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Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada Journal Articles
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Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes Journal Articles
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Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution Journal Articles
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Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution Journal Articles
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Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase Journal Articles
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Protein phylogenies and signature sequences: evolutionary relationships within prokaryotes and between prokaryotes and eukaryotes. Journal Articles
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Protein signatures (molecular synapomorphies) that are distinctive characteristics of the major cyanobacterial clades Journal Articles
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Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces a aThe GenBank accession numbers for the sequences reported in this paper are indicated in the text. Journal Articles
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Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Journal Articles
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Proteins of the Glycine Decarboxylase Complex in the Hydrogenosome ofTrichomonas vaginalis Journal Articles
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Quantitative Phylogenomics of Within-Species Mitogenome Variation: Monte Carlo and Non-Parametric Analysis of Phylogeographic Structure among Discrete Transatlantic Breeding Areas of Harp Seals (Pagophilus groenlandicus) Journal Articles
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RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods Journal Articles
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RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences Journal Articles
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RUNX2 tandem repeats and the evolution of facial length in placental mammals Journal Articles
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Radical changes to chlamydial taxonomy are not necessary just yet. Journal Articles
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Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus Journal Articles
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Rank-based genome-wide analysis reveals the association of Ryanodine receptor-2 gene variants with childhood asthma among human populations Journal Articles
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Rapid spatial learning in cooperative and non-cooperative cichlids Journal Articles
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Rapidly Evolving Genes of Drosophila: Differing Levels of Selective Pressure in Testis, Ovary, and Head Tissues Between Sibling Species Journal Articles
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Recommendations on data sharing in HIV drug resistance research Journal Articles
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Reconstructing the Prior Probabilities of Allelic Phylogenies Journal Articles
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Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus) Journal Articles
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Resolving the phylogenetic position of Darwin's extinct ground sloth (
Mylodon darwinii
) using mitogenomic and nuclear exon data Journal Articles
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Resolving the root of the avian mitogenomic tree by breaking up long branches Journal Articles
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Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths) Journal Articles
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Rh proteins and NH4+-activated Na+-ATPase in the Magadi tilapia (Alcolapia grahami), a 100% ureotelic teleost fish Journal Articles
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Rifampin phosphotransferase is an unusual antibiotic resistance kinase Journal Articles
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Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species Journal Articles
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Robust demarcation of fourteen different species groups within the genus Streptococcus based on genome-based phylogenies and molecular signatures Journal Articles
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Robust demarcation of the family Peptostreptococcaceae and its main genera based on phylogenomic studies and taxon-specific molecular markers Journal Articles
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Role of RpoS in the Virulence of
Citrobacter rodentium Journal Articles
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Saffron Pre-Treatment Promotes Reduction in Tissue Inflammatory Profiles and Alters Microbiome Composition in Experimental Colitis Mice Journal Articles
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Schistosoma mansoni albumin, a major defense against oxidative damage, was acquired by lateral gene transfer from a mammalian host Journal Articles
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Searching for Substitution Rate Heterogeneity Journal Articles
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Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849 Journal Articles
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Selection and Slippage Creating Serine Homopolymers Journal Articles
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Sequence evolution within populations under multiple types of mutation. Journal Articles
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Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source Journal Articles
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Sequence-directed mutagenesis: evidence from a phylogenetic history of human alpha-interferon genes. Journal Articles
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Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes Journal Articles
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Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Journal Articles
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Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans Journal Articles
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Signature proteins for the major clades of Cyanobacteria Journal Articles
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Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups Journal Articles
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Signature proteins that are distinctive of alpha proteobacteria Journal Articles
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Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. Journal Articles
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Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients Conferences
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Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats Journal Articles
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Slr4, a newly identified S‐layer protein from marine Gammaproteobacteria, is a major biofilm matrix component Journal Articles
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Small genome of the fungus
Escovopsis weberi
, a specialized disease agent of ant agriculture Journal Articles
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Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality Journal Articles
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Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation Journal Articles
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Species Delimitation, Phylogenomics, and Biogeography of Sulawesi Flying Lizards: A Diversification History Complicated by Ancient Hybridization, Cryptic Species, and Arrested Speciation Journal Articles
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Species and Genotypic Diversities and Similarities of Pathogenic Yeasts Colonizing Women Journal Articles
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Specificity in the symbiotic association between fungus-growing ants and protective
Pseudonocardia
bacteria Journal Articles
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Specificity of the mutualistic association between actinomycete bacteria and two sympatric species of Acromyrmex leaf‐cutting ants Journal Articles
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Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory Journal Articles
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Statistical models and computational algorithms for discovering relationships in microbiome data Journal Articles
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Statistical universals reveal the structures and functions of human music Journal Articles
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Stem responses to damage: the evolutionary ecology of Quercus species in contrasting fire regimes Journal Articles
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Stingless Bee Larvae Require Fungal Steroid to Pupate Journal Articles
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Structural and Functional Plasticity of Antibiotic Resistance Nucleotidylyltransferases Revealed by Molecular Characterization of Lincosamide Nucleotidylyltransferases Lnu(A) and Lnu(D) Journal Articles
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Structural and functional studies of an IRF-7-like gene from Atlantic salmon Journal Articles
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Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor Journal Articles
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Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d Journal Articles
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Structure, Gene Flow, and Recombination among Geographic Populations of a Russula virescens Ally from Southwestern China Journal Articles
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Substitution rate variation in closely related rodent species Journal Articles
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Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants Journal Articles
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Symbiotic Nitrogen Fixation in the Fungus Gardens of Leaf-Cutter Ants Journal Articles
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Symbiotic complexity: discovery of a fifth symbiont in the attine ant–microbe symbiosis Journal Articles
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Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events Journal Articles
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Taxonomy of the order Mononegavirales: update 2016 Journal Articles
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Temporal Dynamics and Evolution of SARS-CoV-2 Demonstrate the Necessity of Ongoing Viral Genome Sequencing in Ontario, Canada Journal Articles
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Temporal and spatial variations on accumulation of nomilin and limonin in the pummelos Journal Articles
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Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome Journal Articles
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Tetrahymena glochidiophila n. sp., a new species of Tetrahymena (Ciliophora) that causes mortality to glochidia larvae of freshwater mussels (Bivalvia) Journal Articles
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Thaxtomin A-deficient endophytic Streptomyces sp. enhances plant disease resistance to pathogenic Streptomyces scabies Journal Articles
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The Closest BLAST Hit Is Often Not the Nearest Neighbor Journal Articles
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The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist Journal Articles
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The Conserved Tetratricopeptide Repeat-Containing C-Terminal Domain of Pseudomonas aeruginosa FimV Is Required for Its Cyclic AMP-Dependent and -Independent Functions Journal Articles
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The Cytochrome P450 Superfamily Complement (CYPome) in the Annelid Capitella teleta Journal Articles
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The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair Journal Articles
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The Divided Bacterial Genome: Structure, Function, and Evolution Journal Articles
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The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes Journal Articles
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The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia Journal Articles
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The Family Borreliaceae (Spirochaetales), a Diverse Group in Two Genera of Tick-Borne Spirochetes of Mammals, Birds, and Reptiles Journal Articles
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The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance Journal Articles
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The Genetic Secrets Some Fossils Hold Journal Articles
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The Location of Substitutions and Bacterial Genome Arrangements Journal Articles
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The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes Journal Articles
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The Natural Evolutionary Relationships among Prokaryotes Journal Articles
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The Pattern of Amino Acid Replacements in α/β-Barrels Journal Articles
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The Phylogeny and Signature Sequences Characteristics ofFibrobacteres,Chlorobi, andBacteroidetes Journal Articles
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The Pipid Root Journal Articles
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The Population Structure of Antibiotic-Producing Bacterial Symbionts ofApterostigma dentigerumAnts: Impacts of Coevolution and Multipartite Symbiosis Journal Articles
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The Recovery, Interpretation and Use of Ancient Pathogen Genomes Journal Articles
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The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes Journal Articles
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The Rift Valley is a major barrier to dispersal of African clawed frogs (Xenopus) in Ethiopia Journal Articles
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The Role of Palmitoylation for Protein Recruitment to the Inner Membrane Complex of the Malaria Parasite Journal Articles
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The Selective Cause of an Ancient Adaptation Journal Articles
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The Unique Lifestyle of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Journal Articles
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The advantages and disadvantages of horizontal gene transfer and the emergence of the first species Journal Articles
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The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins Journal Articles
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The coevolution of fungus-ant agriculture. Journal Articles
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The cytochrome P450 (CYP) superfamily in cnidarians Journal Articles
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The detection of deleterious selection using ancestors inferred from a phylogenetic history Journal Articles
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The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans. Journal Articles
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The dynamic balance of the skin microbiome across the lifespan Journal Articles
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The effects of environmental and genetic factors on the germination of basidiospores in the Cryptococcus gattii species complex Journal Articles
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The evolution of substrate discrimination in macrolide antibiotic resistance enzymes Journal Articles
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The evolution of the class A scavenger receptors Journal Articles
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The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis Journal Articles
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The fate of laterally transferred genes: Life in the fast lane to adaptation or death Journal Articles
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The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus Journal Articles
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The mosaic nature of the eukaryotic nucleus Journal Articles
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The natural history and genetic diversity of Haemophilus influenzae infecting the airways of adults with cystic fibrosis Journal Articles
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The newly characterized colicin Y provides evidence of positive selection in pore-former colicin diversification During the time this manuscript was being prepared for publication, our colleague James V. Neel passed away. The other authors wish to dedicate this work to his memory. The GenBank accession number for the sequence reported in this paper is AF197335. Journal Articles
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The origin of the eukaryotic cell Journal Articles
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The paradox of HBV evolution as revealed from a 16th century mummy Journal Articles
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The phylogenetic affinities of the extinct glyptodonts Journal Articles
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The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes Journal Articles
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The role of fire in terrestrial vertebrate richness patterns Journal Articles
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The role of laterally transferred genes in adaptive evolution Journal Articles
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The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria Journal Articles
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The structural basis of molecular adaptation Journal Articles
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The use of E. coli phylogrouping and microbial source tracking (non-species specific, human-specific, bovine-specific bacteroidales markers) to elucidate hydro(geo)logical contamination mechanisms in southeastern Ontario, Canada. Journal Articles
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The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division The GenBank accession numbers for the sequences reported in this paper are AY017380, AY017381, AY017382 and AY017383. Journal Articles
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Thousands of small, novel genes predicted in global phage genomes Journal Articles
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Thrice better than once: quality control guidelines to validate new mitogenomes Journal Articles
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Timings of major glaciations, inherent selection schemes and the origins of cold hardy animal phyla. Journal Articles
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Tracking Host Sources of
Cryptosporidium
spp. in Raw Water for Improved Health Risk Assessment Journal Articles
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Transmission of HIV and HCV within Former Soviet Union Countries Journal Articles
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Trends in DNA barcoding and metabarcoding Journal Articles
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Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny Journal Articles
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Tunicates and not cephalochordates are the closest living relatives of vertebrates Journal Articles
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Two new unusualLeucoagaricusspecies (Agaricaceae) from tropical China with blue-green staining reactions Journal Articles
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Ultrastructural and microbial analyses of cellulose degradation in leaf-cutter ant colonies Journal Articles
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Uncovering rate variation of lateral gene transfer during bacterial genome evolution Journal Articles
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Unmelanized Plumage Patterns in Old World Leaf Warblers Do Not Correspond to Sequence Variation at the Melanocortin-1 Receptor Locus (MC1R) Journal Articles
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Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes Journal Articles
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Upregulating Nrf2-dependent antioxidant defenses in Pacific oysters Crassostrea gigas: Investigating the Nrf2/Keap1 pathway in bivalves Journal Articles
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Using a Nonrecursive Formula to Determine Cladogram Probabilities Journal Articles
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Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods Journal Articles
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World‐wide genetic differentiation of Eubalaena: questioning the number of right whale species Journal Articles
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Xenopus fraseri: Mr. Fraser, where did your frog come from? Journal Articles
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Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with
Steinernema
spp. Nematode Hosts Journal Articles
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Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis Journal Articles
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Yersinia pestis and the three plague pandemics–Authors' reply Journal Articles
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Yersinia pestis: New Evidence for an Old Infection Journal Articles
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[Soil microbial diversity of artificial peashrub plantation on North Loess Plateau of China]. Journal Articles
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markophylo: Markov chain analysis on phylogenetic trees Journal Articles