Phylogeny

subject area of

'Outlier' lipocalins more than peripheral Academic Article
17 th Century Variola Virus Reveals the Recent History of Smallpox Academic Article
A Catalog of Reference Genomes from the Human Microbiome Academic Article
A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods Academic Article
A Comprehensive Expression Analysis of the Arabidopsis Proline-rich Extensin-like Receptor Kinase Gene Family using Bioinformatic and Experimental Approaches Academic Article
A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals Academic Article
A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated ProtozoanTetrahymena thermophila Academic Article
A T-to-G Transversion at Nucleotide -567 Upstream of HBG2 in a GATA-1 Binding Motif Is Associated with Elevated Hemoglobin F Academic Article
A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism Academic Article
A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads Academic Article
A comparative study of an innate immune response in Lamprologine cichlid fishes Academic Article
A comprehensive genomic history of extinct and living elephants Academic Article
A comprehensive study of genic variation in natural populations of Drosophila melanogaster. IV. Mitochondrial DNA variation and the role of history vs. selection in the genetic structure of geographic populations. Academic Article
A divergentPseudomonas aeruginosapalmitoyltransferase essential for cystic fibrosis-specific lipid A Academic Article
A draft genome of Yersinia pestis from victims of the Black Death Academic Article
A functionally divergent hydrogenosomal peptidase with protomitochondrial ancestry Academic Article
A maximum likelihood approach to the detection of selection from a phylogeny Academic Article
A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution Academic Article
A new fossil assemblage shows that large angiosperm trees grew in North America by the Turonian (Late Cretaceous) Academic Article
A novel mTOR activating protein protects dopamine neurons against oxidative stress by repressing autophagy related cell death Academic Article
A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution Academic Article
A phylogenetic analysis based on the gene encoding phosphoglycerate kinase Academic Article
A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history Academic Article
A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex) Academic Article
A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives Academic Article
A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia Academic Article
A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera Academic Article
A phylogenomic framework and timescale for comparative studies of tunicates Academic Article
A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov. Academic Article
A spliceosomal intron inGiardialamblia Academic Article
Abundant sequence variation around the mitochondrial origin of replication in the human opportunistic yeast pathogen Candida albicans from a tropical island in China Academic Article
Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates Academic Article
Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities Academic Article
Additional molecular support for the new chordate phylogeny Academic Article
Adenosine kinase and ribokinase – the RK family of proteins Academic Article
Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses Academic Article
Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity Academic Article
Alignment/Phylogeny of the Papain Superfamily of Cysteine Proteases Academic Article
Amplification and sequencing of DNA from a 120–135-million-year-old weevil Academic Article
An Assessment of Sub-Meter Scale Spatial Variability of Arcellinida (Testate Lobose Amoebae) Assemblages in a Temperate Lake: Implications for Limnological Studies Academic Article
An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli Academic Article
An evolutionary model for the insect vitellins Academic Article
An unusual myosuppressin from the blood-feeding bugRhodnius prolixus Academic Article
An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Academic Article
Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes Academic Article
Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain Academic Article
Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus) Academic Article
Ancient DNA Academic Article
Ancient DNA and the tropics: a rodent's tale Academic Article
Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics Academic Article
Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array Academic Article
Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta) Academic Article
Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia Academic Article
AnnoTree: visualization and exploration of a functionally annotated microbial tree of life Academic Article
Antibiotic resistance is ancient Academic Article
Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions Academic Article
Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons? Academic Article
Armadillos exhibit less genetic polymorphism in North America than in South America: nuclear and mitochondrial data confirm a founder effect in Dasypus novemcinctus (Xenarthra) Academic Article
Army Ants Trapped by Their Evolutionary History Academic Article
Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections Academic Article
Asymmetrical Evolution of Cytochrome bd Subunits Academic Article
Autoecological Approaches to Resolve Subjective Taxonomic Divisions within Arcellacea Academic Article
Bacillus DNA in fossil bees: an ancient symbiosis? Academic Article
Bats and Coronaviruses Academic Article
Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution Academic Article
Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites Academic Article
CLONING AND CHARACTERIZATION OF AN mRNA ENCODING AN INSULIN RECEPTOR FROM THE HORNED SCARAB BEETLEOnthophagus nigriventris(COLEOPTERA: SCARABAEIDAE) Academic Article
Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling Academic Article
Carving out turf in a biodiversity hotspot: multiple, previously unrecognized shrew species co-occur on Java Island, Indonesia Academic Article
Characterization and assessment of an avian repetitive DNA sequence as an icterid phylogenetic marker Academic Article
Characterization of Class I– and Class II–Like Major Histocompatibility Complex Loci in Pedigrees of North Atlantic Right Whales Academic Article
Characterization of a Rifampin-Inactivating Glycosyltransferase from a Screen of Environmental Actinomycetes Academic Article
Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase Academic Article
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity Academic Article
Chimeric Structure of the NAD(P)+- and NADP+-dependent Malic Enzymes ofRhizobium (Sinorhizobium) meliloti Academic Article
Chitinase genes (CHIAs) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals Academic Article
Chlamydiae-specific proteins and indels: novel tools for studies Academic Article
Clinical and tree hollow populations of human pathogenic yeast in Hamilton, Ontario, Canada are different Academic Article
Clonal Genotype of Geomyces destructans among Bats with White Nose Syndrome, New York, USA Academic Article
Clonal and spontaneous origins of fluconazole resistance in Candida albicans. Academic Article
Cloning and Some Novel Characteristics of Mitochondrial Hsp70 from Chinese Hamster Cells Academic Article
Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Academic Article
Cloning of the hsp70 (dnaK) genes from Rhizobium meliloti and Pseudomonas cepacia: phylogenetic analyses of mitochondrial origin based on a highly conserved protein sequence. Academic Article
Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes Academic Article
Cold-Active Winter Rye Glucanases with Ice-Binding Capacity Academic Article
Comment on "Hexapod Origins: Monophyletic or Paraphyletic?" Academic Article
Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum Academic Article
Comparative Gene Genealogies Indicate that Two Clonal Lineages ofCryptococcus gattiiin British Columbia Resemble Strains from Other Geographical Areas Academic Article
Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution Academic Article
Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes Academic Article
Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans Academic Article
Comparative molecular phylogeography of two Xenopus species, X. gilli and X. laevis , in the south‐western Cape Province, South Africa Academic Article
Comparative proteome analysis of Acidaminococcus intestini supports a relationship between outer membrane biogenesis in Negativicutes and Proteobacteria Academic Article
Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability Academic Article
Comparison of fecal biota from specific pathogen free and feral mice Academic Article
Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris Academic Article
Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene Academic Article
Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths Academic Article
Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation Academic Article
Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria Academic Article
Constraining the Time Interval for the Origin of Life on Earth Academic Article
Control of breathing and adaptation to high altitude in the bar-headed goose Academic Article
Convergence of gut microbiomes in myrmecophagous mammals Academic Article
Corticosteroid receptor gene expression is related to sex and social behaviour in a social fish Academic Article
Critical Issues in Bacterial Phylogeny Academic Article
Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age Academic Article
D-Ala-D-Ala ligases from glycopeptide antibiotic-producing organisms are highly homologous to the enterococcal vancomycin-resistance ligases VanA and VanB Academic Article
DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms Academic Article
Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes Academic Article
Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum Academic Article
Detecting recent speciation events: the case of the finless porpoise (genus Neophocaena) Academic Article
Development of Real-Time PCR Assays for Detection of the Streptococcus milleri Group from Cystic Fibrosis Clinical Specimens by Targeting the cpn60 and 16S rRNA Genes Academic Article
Differential Y‐chromosome Anatolian Influences on the Greek and Cretan Neolithic Academic Article
Directionality in the evolution of influenza A haemagglutinin Academic Article
Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella Academic Article
Dispersers shape fruit diversity in Ficus (Moraceae) Academic Article
Distinctive Protein Signatures Provide Molecular Markers and Evidence for the Monophyletic Nature of the Deinococcus-Thermus Phylum Academic Article
Diurnal Floc Generation from Neuston Biofilms in Two Contrasting Freshwater Lakes Academic Article
Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeastCryptococcus gattii Academic Article
Divergent respiratory and cardiovascular responses to hypoxia in bar-headed geese and Andean birds Academic Article
Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus) Academic Article
Diversification of Wolbachia Endosymbiont in the Culex pipiens Mosquito Academic Article
Diversity Considerations in HIV-1 Vaccine Selection Academic Article
Diversity of commensal yeasts within and among healthy hosts Academic Article
Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717) Academic Article
Drainage isolation and climate change-driven population expansion shape the genetic structures of Tuber indicum complex in the Hengduan Mountains region Academic Article
EVOLUTION OF THE CLOSELY RELATED, SEX-RELATED GENES DM-W AND DMRT1 IN AFRICAN CLAWED FROGS (XENOPUS) Academic Article
Ecological Genomics of Marine Roseobacters Academic Article
Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps) Academic Article
Enzyme Evolution Explained (Sort Of) Academic Article
Estimating Maximum Likelihood Phylogenies with PhyML Academic Article
Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss Academic Article
Evidence for Inbreeding and Genetic Differentiation among Geographic Populations of the Saprophytic Mushroom Trogia venenata from Southwestern China Academic Article
Evidence for Lateral Transfer of Genes Encoding Ferredoxins, Nitroreductases, NADH Oxidase, and Alcohol Dehydrogenase 3 from Anaerobic Prokaryotes toGiardialambliaandEntamoebahistolytica Academic Article
Evidence for local DNA influences on patterns of substitutions in the human α-interferon gene family Academic Article
Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms Academic Article
Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms. Academic Article
Evidence for the presence of key chlorophyll-biosynthesis-related proteins in the genus Rubrobacter (Phylum Actinobacteria) and its implications for the evolution and origin of photosynthesis Academic Article
Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants Academic Article
Evidence of unique genetic diversity in Aspergillus fumigatus isolates from Cameroon Academic Article
Evidence that Human Chlamydia pneumoniae Was Zoonotically Acquired Academic Article
Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila Academic Article
Evolution of Allosteric Control in Glycogen Phosphorylase Academic Article
Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia Academic Article
Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes Academic Article
Evolution of Proteasome Regulators in Eukaryotes Academic Article
Evolution of RAG-1 in Polyploid Clawed Frogs Academic Article
Evolution of genes and genomes on the Drosophila phylogeny Academic Article
Evolution of the Largest Mammalian Genome Academic Article
Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria Academic Article
Evolution of the chaperonin families (HSP60, HSP 10 and TCP-1) of proteins and the origin of eukaryotic cells Academic Article
Evolution ofDrosophilasex comb length illustrates the inextricable interplay between selection and variation Academic Article
Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta Academic Article
Evolutionary and Functional Analyses of the Interaction between the Myeloid Restriction Factor SAMHD1 and the Lentiviral Vpx Protein Academic Article
Evolutionary and functional diversity of thePseudomonastype IVa pilin island Academic Article
Evolutionary rate variation within Mus APRT Academic Article
Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis Academic Article
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle Academic Article
Expanding the soil antibiotic resistome: exploring environmental diversity Academic Article
Exploratory analysis of multiple sequence alignments using phylogenies Academic Article
Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap Academic Article
Extracting Haplotypes from Diploid Organisms Academic Article
Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences Academic Article
Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error Academic Article
First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins Academic Article
Fish gill morphology: inside out Academic Article
Fossil Rhabdoviral Sequences Integrated into Arthropod Genomes: Ontogeny, Evolution, and Potential Functionality Academic Article
Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun Academic Article
Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization Academic Article
Functional Divergence in the Arabidopsis -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States Academic Article
Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases fromSaccharomyces cerevisiae Academic Article
Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences Academic Article
Fungal mitochondrial genomes and genetic polymorphisms Academic Article
GEOSCIENCE: Microbial Geoengineers Academic Article
Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat? Academic Article
Gene duplication and divergence produce divergent MHC genotypes without disassortative mating Academic Article
Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing Academic Article
Genetic Analyses from Ancient DNA Academic Article
Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens Academic Article
Genetic Diversity of Dahongjun, the Commercially Important “Big Red Mushroom” from Southern China Academic Article
Genetic Structure of Herpetofauna on Halmahera Island, Indonesia: Implications for Aketajawe-Lolobata National Park Academic Article
Genetic Tracking of the Raccoon Variant of Rabies Virus in Eastern North America Academic Article
Genetic and biochemical properties of an alkaline phosphatase PhoX family protein found in many bacteria Academic Article
Genetic and epidemiological analysis of norovirus from children with gastroenteritis in Botswana, 2013–2015 Academic Article
Genetic differentiation, recombination and clonal expansion in environmental populations of Cryptococcus gattii in India Academic Article
Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China Academic Article
Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West and Central Africa Academic Article
Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae Academic Article
Genome duplication events have led to a diversification in the CPT I gene family in fish Academic Article
Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes Academic Article
Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family Academic Article
Genome structure and gene content in protist mitochondrial DNAs Academic Article
Genome-Scale Phylogeny and the Detection of Systematic Biases Academic Article
Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Academic Article
Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov. Academic Article
Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia Academic Article
Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum Academic Article
Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress Academic Article
Genomic insights into the evolution and ecology of botulinum neurotoxins Academic Article
Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene Academic Article
Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria Academic Article
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans Academic Article
HSP70 phylogeny and the relationship between archaebacteria, eubacteria, and eukaryotes Academic Article
HYBRIDIZATION AND POPULATION GENETICS OF TWO MACAQUE SPECIES IN SULAWESI, INDONESIA Academic Article
Have wing morphology or flight kinematics evolved for extreme high altitude migration in the bar-headed goose? Academic Article
Heterologous Complementation Reveals a Specialized Activity for BacA in the Medicago–Sinorhizobium meliloti Symbiosis Academic Article
Heterotachy and long-branch attraction in phylogenetics. Academic Article
High inbreeding, limited recombination and divergent evolutionary patterns between two sympatric morel species in China Academic Article
Human symbionts inject and neutralize antibacterial toxins to persist in the gut Academic Article
Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin Academic Article
Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish Academic Article
Identification of a Hydroxyproline Transport System in the Legume EndosymbiontSinorhizobium meliloti Academic Article
Identification of a Novel Hepatitis C Virus Genotype From Punjab, India: Expanding Classification of Hepatitis C Virus Into 8 Genotypes Academic Article
Identification of a conserved 8 aa insert in the PIP5K protein in the Saccharomycetaceae family of fungi and the molecular dynamics simulations and structural analysis to investigate its potential functional role Academic Article
Identification of a diphtheria toxin-like gene family beyond the Corynebacterium genus Academic Article
Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor. Academic Article
Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups Academic Article
Identification of numerous hepatitis C virus genotypes in Montreal, Canada. Academic Article
Identification, spatial expression analysis and functional characterization of a pyrokinin-1 receptor in the Chagas’ disease vector, Rhodnius prolixus Academic Article
Identifying producers of antibacterial compounds by screening for antibiotic resistance Academic Article
Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification Academic Article
Incidence of elephant endotheliotropic herpesvirus in Asian elephants in India Academic Article
Increase in Carbohydrate Utilization in High-Altitude Andean Mice Academic Article
Inferring Bacterial Genome Flux While Considering Truncated Genes Academic Article
Inferring sequence regions under functional divergence in duplicate genes Academic Article
Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. Academic Article
Insulin signaling and limb-patterning: candidate pathways for the origin and evolutionary diversification of beetle ‘horns’ Academic Article
Integrated gene and species phylogenies from unaligned whole genome protein sequences Academic Article
Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity Academic Article
Iron-Dependent Hydrogenases of Entamoeba histolytica and Giardia lamblia: Activity of the Recombinant Entamoebic Enzyme and Evidence for Lateral Gene Transfer Academic Article
Is Antigenic Sin Always “Original?” Re-examining the Evidence Regarding Circulation of a Human H1 Influenza Virus Immediately Prior to the 1918 Spanish Flu Academic Article
Is there convergence in the molecular pathways underlying the repeated evolution of sociality in African cichlids? Academic Article
Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites Academic Article
Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production Academic Article
Iterative Evolution of Increased Behavioral Variation Characterizes the Transition to Sociality in Spiders and Proves Advantageous Academic Article
JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL Academic Article
Latent homologues for the neural crest as an evolutionary novelty Academic Article
Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae Academic Article
Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis Academic Article
Les datations moléculaires à l’heure de la génomique Academic Article
Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals Academic Article
Life history evolution in cichlids 1: revisiting the evolution of life histories in relation to parental care Academic Article
Life history evolution in cichlids 2: directional evolution of the trade-off between egg number and egg size Academic Article
Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function Academic Article
Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations Conference Paper
Microbial Diversity and Host-Specific Sequences of Canada Goose Feces Academic Article
Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances Academic Article
Microbial systematics in the post-genomics era Academic Article
Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt Academic Article
Middle East Respiratory Syndrome Coronavirus Infection in Dromedary Camels in Saudi Arabia Academic Article
Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements Academic Article
Mitochondrial DNA analysis of sympatric morphotypes of bottlenose dolphins (genus: Tursiops) in Chinese waters Academic Article
Mitochondrial DNA variation and genetic structure in populations of Drosophila melanogaster. Academic Article
Molecular Cloning and Characterization of Tetrahydroprotoberberinecis-N-Methyltransferase, an Enzyme Involved in Alkaloid Biosynthesis in Opium Poppy Academic Article
Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose Academic Article
Molecular Phylogeny of Living Xenarthrans and the Impact of Character and Taxon Sampling on the Placental Tree Rooting Academic Article
Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs (Xenopus) Academic Article
Molecular analysis of a 11 700-year-old rodent midden from the Atacama Desert, Chile Academic Article
Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water Academic Article
Molecular caving Academic Article
Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis Academic Article
Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila Academic Article
Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii Academic Article
Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos Academic Article
Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades Academic Article
Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus Academic Article
Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia Academic Article
Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales, containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov. Academic Article
Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations Academic Article
Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae Academic Article
Molecular signatures for the phylum Synergistetes and some of its subclades Academic Article
Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues Academic Article
Molecular signatures that are distinctive characteristics of the vertebrates and chordates and supporting a grouping of vertebrates with the tunicates Academic Article
Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes Conference Paper
Morphological evaluation of spermatogenesis in Lake Magadi tilapia (Alcolapia grahami): A fish living on the edge Academic Article
Multicopy gene family evolution on primate Y chromosomes Academic Article
Multilocus Sequence Typing Reveals both Shared and Unique Genotypes of Cryptococcus neoformans in Jiangxi Province, China Academic Article
Multilocus sequence analyses reveal extensive diversity and multiple origins of fluconazole resistance in Candida tropicalis from tropical China Academic Article
Multilocus sequence typing ofCandida africanafrom patients with vulvovaginal candidiasis in New Delhi, India Academic Article
Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti Academic Article
Multiple gene genealogical analyses suggest divergence and recent clonal dispersal in the opportunistic human pathogen Candida guilliermondii Academic Article
Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungusCryptococcus neoformans Academic Article
Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population Academic Article
Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD Academic Article
Mycobacterial adenosine kinase is not a typical adenosine kinase Academic Article
Mylodon darwinii DNA sequences from ancient fecal hair shafts Academic Article
Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons Academic Article
Natural Selection for Nucleotide Usage at Synonymous and Nonsynonymous Sites in Influenza A Virus Genes Academic Article
New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance Academic Article
Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae) Academic Article
Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach’s storm-petrel Academic Article
North American matsutake: names clarified and a new species described Academic Article
Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti Academic Article
Novel insights into the origin and diversification of photosynthesis based on analyses of conserved indels in the core reaction center proteins Academic Article
Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales Academic Article
Nuclear Gene Sequences from a Late Pleistocene Sloth Coprolite Academic Article
Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes Academic Article
Occurrence of Virulence and Antimicrobial Resistance Genes in Escherichia coli Isolates from Different Aquatic Ecosystems within the St. Clair River and Detroit River Areas Academic Article
Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila Academic Article
Optimization of culturing conditions for toxicity testing with the algaOophilasp. (Chlorophyceae), an amphibian endosymbiont Academic Article
Oral yeast flora and its ITS sequence diversity among a large cohort of medical students in Hainan, China Academic Article
Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins Academic Article
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Osteocalcin protein sequences of Neanderthals and modern primates Academic Article
Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths Academic Article
PCR–restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candida albicans Academic Article
Pan-African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’ Academic Article
Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods Academic Article
Partial characterization of the genome of nine animal caliciviruses Academic Article
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Patterns of Bacterial Gene Movement Academic Article
Peripheral Chemoreceptors in Air- Versus Water- Breathers Chapter
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Phylogenetic Analysis of the Cytochrome P450 3 (CYP3) Gene Family Academic Article
Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces Academic Article
Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria Academic Article
Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures Academic Article
Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana Academic Article
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Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives Academic Article
Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus Academic Article
Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing Academic Article
Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species. Academic Article
Phylogenetic analysis of the caliciviruses Academic Article
Phylogenetic analysis of the diacylglycerol kinase family of proteins and identification of multiple highly-specific conserved inserts and deletions within the catalytic domain that are distinctive characteristics of different classes of DGK homologs Academic Article
Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family Academic Article
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Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation Academic Article
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Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov. Academic Article
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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis Academic Article
Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family Academic Article
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Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov. Academic Article
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Physiological tradeoffs may underlie the evolution of hypoxia tolerance and exercise performance in sunfish (Centrarchidae) Conference Paper
Plasmodium possesses dynein light chain classes that are unique and conserved across species Academic Article
Polymerase chain reaction-based detection of bacteria in semen**Supported by grants from The Physicians' Services Incorporated Foundation, Toronto, Ontario, Canada (K.J, D.H., and M.W.M.). A Roscoe-Reid Graham Scholarship in Surgical Science and a Canadian Urology Association Scholarship, Toronto, Ontario, Canada is held by K.J. Academic Article
Population Genetic Analyses of the Fungal Pathogen Colletotrichum fructicola on Tea-Oil Trees in China Academic Article
Population Genetics Without Intraspecific Data Academic Article
Population-specific incidence of testicular ovarian follicles in Xenopus laevis from South Africa: A potential issue in endocrine testing Academic Article
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Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins Academic Article
Prevalence of specific and phylogenetically closely related genotypes in the population of Candida albicans associated with genital candidiasis in China Academic Article
Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada Academic Article
Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution Academic Article
Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution Academic Article
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Protein-based phylogenies support a chimeric origin for the eukaryotic genome. Academic Article
Proteins of the Glycine Decarboxylase Complex in the Hydrogenosome ofTrichomonas vaginalis Academic Article
RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum-likelihood methods. Academic Article
RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences Academic Article
RUNX2 tandem repeats and the evolution of facial length in placental mammals Academic Article
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Rank-based genome-wide analysis reveals the association of Ryanodine receptor-2 gene variants with childhood asthma among human populations Academic Article
Rapidly Evolving Genes of Drosophila: Differing Levels of Selective Pressure in Testis, Ovary, and Head Tissues Between Sibling Species Academic Article
Reconstructing the prior probabilities of allelic phylogenies. Academic Article
Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus) Academic Article
Resolving the phylogenetic position of Darwin's extinct ground sloth ( Mylodon darwinii ) using mitogenomic and nuclear exon data Academic Article
Resolving the root of the avian mitogenomic tree by breaking up long branches Academic Article
Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths) Academic Article
Rh proteins and NH4+-activated Na+-ATPase in the Magadi tilapia (Alcolapia grahami), a 100% ureotelic teleost fish Academic Article
Rifampin phosphotransferase is an unusual antibiotic resistance kinase Academic Article
Robust demarcation of fourteen different species groups within the genus Streptococcus based on genome-based phylogenies and molecular signatures Academic Article
Role of RpoS in the Virulence of Citrobacter rodentium Academic Article
Schistosoma mansoni albumin, a major defense against oxidative damage, was acquired by lateral gene transfer from a mammalian host Academic Article
Searching for Substitution Rate Heterogeneity Academic Article
Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849 Academic Article
Selection and Slippage Creating Serine Homopolymers Academic Article
Sequence Note: Molecular Epidemiological Analysis of Human Immunodeficiency Virus Type 1 in Newfoundland, Canada Academic Article
Sequence evolution within populations under multiple types of mutation. Academic Article
Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes. Academic Article
Sex-Linked Inheritance in Macaque Monkeys: Implications for Effective Population Size and Dispersal to Sulawesi Academic Article
Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans Academic Article
Signature proteins for the major clades of Cyanobacteria Academic Article
Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups Academic Article
Signature proteins that are distinctive of alpha proteobacteria. Academic Article
Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. Academic Article
Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients Conference Paper
Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats Academic Article
Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation Academic Article
Species and genotypic diversities and similarities of pathogenic yeasts colonizing women. Academic Article
Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis Academic Article
Statistical models and computational algorithms for discovering relationships in microbiome data Academic Article
Statistical universals reveal the structures and functions of human music Academic Article
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Structural and Functional Plasticity of Antibiotic Resistance Nucleotidylyltransferases Revealed by Molecular Characterization of Lincosamide Nucleotidylyltransferases Lnu(A) and Lnu(D) Academic Article
Structural and functional studies of an IRF-7-like gene from Atlantic salmon Academic Article
Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor Academic Article
Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d Academic Article
Structure, Gene Flow, and Recombination among Geographic Populations of a Russula virescens Ally from Southwestern China Academic Article
Structure, expression and phylogenetic analysis of the glycoprotein gene of Cocal virus Academic Article
Substitution rate variation in closely related rodent species Academic Article
Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events Academic Article
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The Conserved Tetratricopeptide Repeat-Containing C-Terminal Domain of Pseudomonas aeruginosa FimV Is Required for Its Cyclic AMP-Dependent and -Independent Functions Academic Article
The Cytochrome P450 Superfamily Complement (CYPome) in the Annelid Capitella teleta Academic Article
The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair Academic Article
The Divided Bacterial Genome: Structure, Function, and Evolution Academic Article
The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes Academic Article
The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia Academic Article
The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance Academic Article
The Genetic Secrets Some Fossils Hold Academic Article
The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes Academic Article
The Natural Evolutionary Relationships among Prokaryotes Academic Article
The Pattern of Amino Acid Replacements in α/β-Barrels Academic Article
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The Pipid Root Academic Article
The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes Academic Article
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The Rift Valley is a major barrier to dispersal of African clawed frogs (Xenopus) in Ethiopia Academic Article
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The Selective Cause of an Ancient Adaptation Academic Article
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The origin of the eukaryotic cell Academic Article
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The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes Academic Article
The role of laterally transferred genes in adaptive evolution Academic Article
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The structural basis of molecular adaptation Academic Article
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Timings of major glaciations, inherent selection schemes and the origins of cold hardy animal phyla. Academic Article
Torulaspora quercuumâ sp. nov. andCandida pseudohumilisâ sp. nov., novel yeasts from human and forest habitats Academic Article
Tracking Host Sources of Cryptosporidium spp. in Raw Water for Improved Health Risk Assessment Academic Article
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Tunicates and not cephalochordates are the closest living relatives of vertebrates Academic Article
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Uncovering rate variation of lateral gene transfer during bacterial genome evolution Academic Article
Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes Academic Article
Using a Nonrecursive Formula to Determine Cladogram Probabilities Academic Article
Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods Academic Article
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Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis Academic Article
Yersinia pestis and the three plague pandemics–Authors' reply Academic Article
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