Phylogenetic analysis and homology modelling of a new Cry8A crystal protein expressed in a sporulating soil bacterium. Journal Articles uri icon

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abstract

  • Cry proteins, commonly found in Gram-positive soil bacteria, are used worldwide as aerial sprays or in transgenic plants for controlling crop pest populations and insect vectors. Via PCR analysis, a spore producing soil isolate (BV5) was speculated to encode a Cry gene. Partial nucleotide sequence of the amplified PCR fragment showed homology with the Cry8 genes present in GenBank. A full-length Cry gene was cloned, and the predicted protein sequence grouped the newly isolated Cry protein with other Cry8A present in GenBank with a high possibility of it being a new Cry8. SDS-PAGE and MALDI-TOF mass spectrometry confirmed the expression of a single 135 KDa protein matching uniquely to the putative protein sequence of the BV5 Cry gene. However, bioassay against the coleopteran Anthonomus grandis (Coleopterans are a known Cry8A target), showed no activity. Phylogenetic analysis and homology modelling was performed to characterize the protein structure and function. These analyses suggest a series of mutations in one of the variable loops on the surface of the protein.

authors

  • Antonino, José D
  • Chaudhary, Shalini
  • Lubberts, Mark
  • McConkey, Brendan
  • Valença, Camilla AS
  • de Aragão Batista, Marcus V
  • Severino, Patricia
  • da Costa Mendonça, Marcelo
  • Souto, Eliana B
  • Dolabella, Silvio S
  • Jain, Sona

publication date

  • January 5, 2025