Journal article
Identification of a conserved 8 aa insert in the PIP5K protein in the Saccharomycetaceae family of fungi and the molecular dynamics simulations and structural analysis to investigate its potential functional role
Abstract
Homologs of the phosphatidylinositol-4-phosphate-5-kinase (PIP5K), which controls a multitude of essential cellular functions, contain a 8 aa insert in a conserved region that is specific for the Saccharomycetaceae family of fungi. Using structures of human PIP4K proteins as templates, structural models were generated of the Saccharomyces cerevisiae and human PIP5K proteins. In the modeled S. cerevisiae PIP5K, the 8 aa insert forms a surface …
Authors
Khadka B; Gupta RS
Journal
Proteins Structure Function and Bioinformatics, Vol. 85, No. 8, pp. 1454–1467
Publisher
Wiley
Publication Date
August 2017
DOI
10.1002/prot.25306
ISSN
0887-3585
Associated Experts
Fields of Research (FoR)
Medical Subject Headings (MeSH)
1,2-DipalmitoylphosphatidylcholineAmino Acid SequenceCatalytic DomainConserved SequenceHumansKineticsLipid BilayersMolecular Dynamics SimulationMutagenesis, InsertionalPhosphatidylcholinesPhosphatidylinositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)PhylogenyProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentStatic ElectricityStructural Homology, ProteinSubstrate SpecificityThermodynamics