Oligonucleotide Array Sequence Analysis Concept

subject area of

• Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD  Journal Articles
• Staphylococcus aureus Nonribosomal Peptide Secondary Metabolites Regulate Virulence  Journal Articles
• WNT2promoter methylation in human placenta is associated with low birthweight percentile in the neonate  Journal Articles
• A FLEXIBLE NONPARAMETRIC APPROACH TO FIND CANDIDATE GENES ASSOCIATED WITH DISEASE IN MICROARRAY EXPERIMENTS  Journal Articles
• A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer  Journal Articles
• A Genomic Score Prognostic of Outcome in Trauma Patients  Journal Articles
• A Multivariate Growth Curve Model for Ranking Genes in Replicated Time Course Microarray Data  Journal Articles
• A Virulence and Antimicrobial Resistance DNA Microarray Detects a High Frequency of Virulence Genes in Escherichia coli Isolates from Great Lakes Recreational Waters  Journal Articles
• A genome assembly-integrated dog 1 Mb BAC microarray: a cytogenetic resource for canine cancer studies and comparative genomic analysis  Journal Articles
• A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease  Journal Articles
• A genome-wide association study of sporadic ALS in a homogenous Irish population  Journal Articles
• Activation of the WT1 tumor suppressor gene promoter by Pea3  Journal Articles
• Agreement in DNA methylation levels from the Illumina 450K array across batches, tissues, and time  Journal Articles
• Alternative expression analysis by RNA sequencing.  Journal Articles
• An ABC-Type Cobalt Transport System Is Essential for Growth of Sinorhizobium melilotiat Trace Metal Concentrations  Journal Articles
• An RNAi Screen Identifies Msi2 and Prox1 as Having Opposite Roles in the Regulation of Hematopoietic Stem Cell Activity  Journal Articles
• An algorithm to discover gene signatures with predictive potential  Journal Articles
• An update on apocrine lesions of the breast  Journal Articles
• Analysis of factorial time-course microarrays with application to a clinical study of burn injury  Journal Articles
• Analysis of global mRNA expression in human skeletal muscle during recovery from endurance exercise  Journal Articles
• Analysis of the Human Fetal Liver Hematopoietic Microenvironment  Journal Articles
• Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array  Journal Articles
• Apoptosis is signalled early by low doses of ionising radiation in a radiation-induced bystander effect  Journal Articles
• Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms  Journal Articles
• Association Between Levels of Coding Sequence Divergence and Gene Misregulation in Drosophila Male Hybrids  Journal Articles
• Asymmetric segregation and self-renewal of hematopoietic stem and progenitor cells with endocytic Ap2a2  Journal Articles
• BOND: Basic OligoNucleotide Design  Journal Articles
• Bone marrow cells from patients with Shwachman‐Diamond syndrome abnormally express genes involved in ribosome biogenesis and RNA processing  Journal Articles
• Cell autonomous roles for AP‐2α in lens vesicle separation and maintenance of the lens epithelial cell phenotype  Journal Articles
• Cellular processes of v-Src transformation revealed by gene profiling of primary cells - Implications for human cancer  Journal Articles
• ChIP-on-Chip Analysis of In Vivo Mutant p53 Binding To Selected Gene Promoters  Journal Articles
• Changes in the transcriptome of abdominal subcutaneous adipose tissue in response to short-term overfeeding in lean and obese men  Journal Articles
• Characterization of a Novel Primary Mammary Tumor Cell Line Reveals that Cyclin D1 Is Regulated by the Type I Insulin-Like Growth Factor Receptor  Journal Articles
• Characterization of formulated microbial products by denaturing gradient gel electrophoresis, total cellular fatty acid analysis, and DNA microarray analysis  Journal Articles
• Chemical Genomic Approaches to Study Model Microbes  Journal Articles
• Chlamydiae Host Cell Interactions Revealed Using DNA Microarrays  Journal Articles
• Clinical Validation of Fragile X Syndrome Screening by DNA Methylation Array  Journal Articles
• Clinical Validation of a Genome-Wide DNA Methylation Assay for Molecular Diagnosis of Imprinting Disorders  Journal Articles
• Clinical and molecular delineation of the 17q21.31 microdeletion syndrome  Journal Articles
• Common reduction of the Raf kinase inhibitory protein in clear cell renal cell carcinoma  Journal Articles
• Comparison of Tolerated and Rejected Islet Grafts: A Gene Expression Study  Journal Articles
• Comparison of longitudinal leukocyte gene expression after burn injury or trauma-hemorrhage in mice  Journal Articles
• Comprehensive Analysis of Genomic Variation in the LPA Locus and Its Relationship to Plasma Lipoprotein(a) in South Asians, Chinese, and European Caucasians  Journal Articles
• Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells  Journal Articles
• Comprehensive fluorescence profiles of contamination-prone foods applied to the design of microcontact-printed in situ functional oligonucleotide sensors  Journal Articles
• Comprehensive microRNA expression profiling of the hematopoietic hierarchy  Journal Articles
• Concept, Design and Implementation of a Cardiovascular Gene-Centric 50 K SNP Array for Large-Scale Genomic Association Studies  Journal Articles
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Journal Articles
• Controlling Microarray Spot Morphology with Polymer Liftoff Arrays  Journal Articles
• Cost-effectiveness of Genome and Exome Sequencing in Children Diagnosed with Autism Spectrum Disorder  Conferences
• DNA methylation age calculators reveal association with diabetic neuropathy in type 1 diabetes  Journal Articles
• Data mining of gene expression changes in Alzheimer brain  Journal Articles
• Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis  Journal Articles
• Direct Profiling of Cancer Biomarkers in Tumor Tissue Using a Multiplexed Nanostructured Microelectrode Integrated Circuit  Journal Articles
• Direct, Electronic MicroRNA Detection for the Rapid Determination of Differential Expression Profiles  Journal Articles
• Discovery of Novel Hypermethylated Genes in Prostate Cancer Using Genomic CpG Island Microarrays  Journal Articles
• Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray  Journal Articles
• Disruption at the PTCHD1 Locus on Xp22.11 in Autism Spectrum Disorder and Intellectual Disability  Journal Articles
• Dissecting Inflammatory Complications in Critically Injured Patients by Within-Patient Gene Expression Changes: A Longitudinal Clinical Genomics Study  Journal Articles
• EB1 Levels Are Elevated in Ascorbic Acid (AA)-stimulated Osteoblasts and Mediate Cell-Cell Adhesion-induced Osteoblast Differentiation  Journal Articles
• ERM is required for transcriptional control of the spermatogonial stem cell niche  Journal Articles
• Eccentric Exercise Activates Novel Transcriptional Regulation of Hypertrophic Signaling Pathways Not Affected by Hormone Changes  Journal Articles
• Effects of Bacterial ACC Deaminase onBrassica napusGene Expression  Journal Articles
• Epithelial-Restricted Gene Profile of Primary Cultures from Human Prostate Tumors: A Molecular Approach to Predict Clinical Behavior of Prostate Cancer  Journal Articles
• Estimating Number of Clusters Based on a General Similarity Matrix with Application to Microarray Data  Journal Articles
• Estrogen independent gene expression defines clinically relevant subgroups of estrogen receptor positive breast cancer  Journal Articles
• Estrogen-Dependent Dynamic Profile of eNOS-DNA Associations in Prostate Cancer  Journal Articles
• Estrogen-responsive gene networks in the teleost liver: What are the key molecular indicators?  Journal Articles
• Ets-1 Regulates Energy Metabolism in Cancer Cells  Journal Articles
• Expression profiling of familial breast cancers demonstrates higher expression of FGFR2 in BRCA2-associated tumors  Journal Articles
• Follistatin promotes adipocyte differentiation, browning, and energy metabolism  Journal Articles
• Forward and reverse genetics to identify genes involved in the age‐related resistance response in Arabidopsis thaliana  Journal Articles
• Functional Divergence in the Arabidopsis  -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States  Journal Articles
• Gene Expression Profiling of Human Cancers  Conferences
• Gene Expression, Fiber Type, and Strength Are Similar Between Left and Right Legs in Older Adults  Journal Articles
• Gene Regulation Divergence Is a Major Contributor to the Evolution of Dobzhansky–Muller Incompatibilities between Species of Drosophila  Journal Articles
• Gene expression endpoints following chronic waterborne copper exposure in a genomic model organism, the zebrafish, Danio rerio  Journal Articles
• Gene expression profiling in human skeletal muscle during recovery from eccentric exercise  Journal Articles
• Gene expression profiling in the Cynomolgus macaque Macaca fascicularis shows variation within the normal birth range  Journal Articles
• Gene expression profiling of PBMCs from Holstein and Jersey cows sub-clinically infected with Mycobacterium avium ssp. paratuberculosis  Journal Articles
• Gene expression using microarrays in transplant recipients at risk of EBV lymphoproliferation after organ transplantation: Preliminary proof‐of‐concept  Journal Articles
• Genetic Changes Accompanying the Evolution of Host Specialization in Drosophila sechellia  Journal Articles
• Genetic Determinants of “Cognitive Impairment, No Dementia”  Journal Articles
• Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia  Journal Articles
• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria  Journal Articles
• Genome variation in the symbiotic nitrogen-fixing bacteriumSinorhizobium meliloti  Journal Articles
• Genome-Wide DNA Methylation Analysis of Chinese Patients with Systemic Lupus Erythematosus Identified Hypomethylation in Genes Related to the Type I Interferon Pathway  Journal Articles
• Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses  Journal Articles
• Genomic Consequences of Background Effects onscallopedMutant Expressivity in the Wing ofDrosophila melanogaster  Journal Articles
• Genomic Instability in Regions Adjacent to a Highly ConservedpchProphage inEscherichia coliO157:H7 Generates Diversity in Expression Patterns of the LEE Pathogenicity Island  Journal Articles
• Global analyses of gene expression in early experimental osteoarthritis  Journal Articles
• Global and targeted gene expression and protein content in skeletal muscle of young men following short-term creatine monohydrate supplementation  Journal Articles
• Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933  Journal Articles
• Gob-5 Is Not Essential for Mucus Overproduction in Preclinical Murine Models of Allergic Asthma  Journal Articles
• Hepatic Gene Expression During Endotoxemia  Journal Articles
• Herpes Simplex Virus Triggers and Then Disarms a Host Antiviral Response  Journal Articles
• High Interleukin-15 Expression Characterizes Childhood Acute Lymphoblastic Leukemia With Involvement of the CNS  Journal Articles
• Histone Modification Profiling in Normal and Transformed Human Embryonic Stem Cells Using Micro Chromatin Immunoprecipitation, Scalable to Genome-Wide Microarray Analyses  Journal Articles
• Hormone Receptor and ERBB2 Status in Gene Expression Profiles of Human Breast Tumor Samples  Journal Articles
• How consistent are we? Interlaboratory comparison study in fathead minnows using the model estrogen 17α‐ethinylestradiol to develop recommendations for environmental transcriptomics  Journal Articles
• Human Adipose Tissue Macrophages Display Activation of Cancer-related Pathways  Journal Articles
• Human Embryonic Stem Cell-Derived Hematopoietic Cells Maintain Core Epigenetic Machinery of the Polycomb Group/Trithorax Group Complexes Distinctly from Functional Adult Hematopoietic Stem Cells  Journal Articles
• Human transcriptome array for high-throughput clinical studies  Journal Articles
• Hypermetabolic Syndrome as a Consequence of Repeated Psychological Stress in Mice  Journal Articles
• Identification and evaluation of network modules for the prognosis of basal-like breast cancer  Journal Articles
• Identification of Direct p73 Target Genes Combining DNA Microarray and Chromatin Immunoprecipitation Analyses  Journal Articles
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Journal Articles
• Impact of IQ on the diagnostic yield of chromosomal microarray in a community sample of adults with schizophrenia  Journal Articles
• Infectious salmon anaemia virus (ISAV) isolates induce distinct gene expression responses in the Atlantic salmon (Salmo salar) macrophage/dendritic-like cell line TO, assessed using genomic techniques  Journal Articles
• Inhibition of endogenous MTF-1 signaling in zebrafish embryos identifies novel roles for MTF-1 in development  Journal Articles
• Insulin prevents liver damage and preserves liver function in lipopolysaccharide-induced endotoxemic rats  Journal Articles
• Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models  Journal Articles
• Interferon-Mediated Immunopathological Events Are Associated with Atypical Innate and Adaptive Immune Responses in Patients with Severe Acute Respiratory Syndrome  Journal Articles
• Interleukin‐1 in combination with oncostatin M up‐regulates multiple genes in chondrocytes: Implications for cartilage destruction and repair  Journal Articles
• Interpreting the Host-Pathogen Dialogue Through Microarrays  Journal Articles
• Investigating the Link between Molecular Subtypes of Glioblastoma, Epithelial-Mesenchymal Transition, and CD133 Cell Surface Protein  Journal Articles
• Issues for reporting results  Journal Articles
• Label-free detection of nucleic acid and protein microarrays by scanning Kelvin nanoprobe  Journal Articles
• Leukaemia‐related gene expression in bone marrow cells from patients with the preleukaemic disorder Shwachman–Diamond syndrome  Journal Articles
• Limb Immobilization Induces a Coordinate Down-Regulation of Mitochondrial and Other Metabolic Pathways in Men and Women  Journal Articles
• Loss of Hepatocyte-Nuclear-Factor-4α Affects Colonic Ion Transport and Causes Chronic Inflammation Resembling Inflammatory Bowel Disease in Mice  Journal Articles
• Lunatic Fringe Deficiency Cooperates with the Met/Caveolin Gene Amplicon to Induce Basal-like Breast Cancer  Journal Articles
• Manitoba-oculo-tricho-anal (MOTA) syndrome is caused by mutations in FREM1  Journal Articles
• Massage Therapy Attenuates Inflammatory Signaling After Exercise-Induced Muscle Damage  Journal Articles
• Menin Links the Stress Response to Genome Stability in Drosophila melanogaster  Journal Articles
• Metronomic PDT and Cell Death Pathways  Journal Articles
• MicroRNA Signature in Metastatic Colorectal Cancer Patients Treated With Anti-EGFR Monoclonal Antibodies  Journal Articles
• Microarray Meta-Analysis Identifies Acute Lung Injury Biomarkers in Donor Lungs That Predict Development of Primary Graft Failure in Recipients  Journal Articles
• Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12  Journal Articles
• Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas  Journal Articles
• Model-based clustering of microarray expression data via latent Gaussian mixture models  Journal Articles
• Modulation of Hexa-Acyl Pyrophosphate Lipid A Population underEscherichia coliPhosphate (Pho) Regulon Activation  Journal Articles
• Modulation of the Vitamin D3 Response by Cancer-Associated Mutant p53  Journal Articles
• Molecular Diagnosis of Myopathies  Journal Articles
• Molecular Diagnostic Yield of Chromosomal Microarray Analysis and Whole-Exome Sequencing in Children With Autism Spectrum Disorder  Journal Articles
• Molecular Evidence for OCT4-Induced Plasticity in Adult Human Fibroblasts Required for Direct Cell Fate Conversion to Lineage Specific Progenitors  Journal Articles
• Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila  Journal Articles
• Mouse models of cystathionine β‐synthase deficiency reveal significant threshold effects of hyperhomocysteinemia  Journal Articles
• Multi-Ethnic Genetic Association Study of Carotid Intima-Media Thickness Using a Targeted Cardiovascular SNP Microarray  Journal Articles
• Multiple Imprinted and Stemness Genes Provide a Link between Normal and Tumor Progenitor Cells of the Developing Human Kidney  Journal Articles
• Multiple genes in human 20q13 chromosomal region are involved in an advanced prostate cancer xenograft.  Journal Articles
• Neonates harbour highly active γδ T cells with selective impairments in preterm infants  Journal Articles
• New Tools for Investigating the Comparative Biology of Caenorhabditis  briggsae and C. elegans  Journal Articles
• Notch-HES1 signaling axis controls hemato-endothelial fate decisions of human embryonic and induced pluripotent stem cells  Journal Articles
• Occurrence of Virulence and Antimicrobial Resistance Genes in Escherichia coli Isolates from Different Aquatic Ecosystems within the St. Clair River and Detroit River Areas  Journal Articles
• Overexpression of vimentin: role in the invasive phenotype in an androgen-independent model of prostate cancer.  Journal Articles
• PML, YAP, and p73 Are Components of a Proapoptotic Autoregulatory Feedback Loop  Journal Articles
• Parathyroid hormone-related protein (PTHrP) modulates adhesion, migration and invasion in bone tumor cells  Journal Articles
• Peripheral Blood Gene Expression Changes during Allergen Inhalation Challenge in Atopic Asthmatic Individuals  Journal Articles
• Progressive Transforming Growth Factor β1–induced Lung Fibrosis Is Blocked by an Orally Active ALK5 Kinase Inhibitor  Journal Articles
• Protein-leucine ingestion activates a regenerative inflammo-myogenic transcriptome in skeletal muscle following intense endurance exercise  Journal Articles
• Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli  Journal Articles
• Rad is temporally regulated within myogenic progenitor cells during skeletal muscle regeneration  Journal Articles
• Real-time processing and compression of DNA microarray images  Journal Articles
• Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance.  Journal Articles
• Role of insulin-like growth factor binding proteins (IGFBPs) in breast cancer proliferation and metastasis.  Journal Articles
• Role of the transcription factor Ets-1 in cisplatin resistance  Journal Articles
• RpoS regulation of gene expression during exponential growth of Escherichia coli K12  Journal Articles
• Scanning Kelvin nanoprobe detection in materials science and biochemical analysis  Journal Articles
• Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray  Journal Articles
• Severe Injury Is Associated With Insulin Resistance, Endoplasmic Reticulum Stress Response, and Unfolded Protein Response  Journal Articles
• Severe intellectual disability and autistic features associated with microduplication 2q23.1  Journal Articles
• Sex Differences in Global mRNA Content of Human Skeletal Muscle  Journal Articles
• Shifting of Immune Responsiveness to House Dust Mite by Influenza A Infection: Genomic Insights  Journal Articles
• Single-Species Microarrays and Comparative Transcriptomics  Journal Articles
• Single-Step Printable Hydrogel Microarray Integrating Long-Chain DNA for the Discriminative and Size-Specific Sensing of Nucleic Acids  Journal Articles
• SseL Is a Salmonella -Specific Translocated Effector Integrated into the SsrB-Controlled Salmonella Pathogenicity Island 2 Type III Secretion System  Journal Articles
• Subinhibitory concentrations of tetracycline affect virulence gene expression in a multi-resistant Salmonella enterica subsp. enterica serovar Typhimurium DT104  Journal Articles
• Targeting prostate cancer with HTI‐286, a synthetic analog of the marine sponge product hemiasterlin  Journal Articles
• Tests for differential gene expression using weights in oligonucleotide microarray experiments  Journal Articles
• The GDNF Target Vsnl1 Marks the Ureteric Tip  Journal Articles
• The clinical need for the RVP test  Journal Articles
• The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products  Journal Articles
• The effects of lymph node status on predicting outcome in ER+ /HER2- tamoxifen treated breast cancer patients using gene signatures  Journal Articles
• The gene associated with trichorhinophalangeal syndrome in humans is overexpressed in breast cancer  Journal Articles
• The post-genomic era: workshop on chromatin immunoprecipitation-related techniques  Journal Articles
• The search for autism disease genes  Journal Articles
• Therapeutic Potential of Spleen Tyrosine Kinase Inhibition for Treating High-Risk Precursor B Cell Acute Lymphoblastic Leukemia  Journal Articles
• Topoisomerase II Alpha and Responsiveness of Breast Cancer to Adjuvant Chemotherapy  Journal Articles
• Toxicogenomic Analysis of Mainstream Tobacco Smoke-Exposed Mice Reveals Repression of Plasminogen Activator Inhibitor-1 Gene in Heart  Journal Articles
• Transcriptional Profiling Implicates Novel Interactions between Abiotic Stress and Hormonal Responses in Thellungiella, a Close Relative of Arabidopsis    Journal Articles
• Transcriptional profiling and regulation of the extracellular matrix during muscle regeneration  Journal Articles
• Transcriptional profiling of rat hypothalamus response to 2,3,7,8-tetrachlorodibenzo-ρ-dioxin.  Journal Articles
• Transcriptional upregulation of p21/WAF/Cip1 in myeloid leukemic blasts expressing AML1-ETO  Journal Articles
• Transcriptome Profiling and Functional Analysis ofAgrobacterium tumefaciensReveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved inAgrobacterium-Plant Interactions  Journal Articles
• Transcriptome and translational signaling following endurance exercise in trained skeletal muscle: impact of dietary protein  Journal Articles
• Transcriptomic and proteomic analyses in bone tumor cells: Deciphering parathyroid hormone-related protein regulation of the cell cycle and apoptosis  Journal Articles
• Understanding Skeletal Muscle Adaptation to Exercise Training in Humans: Contributions from Microarray Studies  Journal Articles
• Up-regulation of Hsp27 Plays a Role in the Resistance of Human Colon Carcinoma HT29 Cells to Photooxidative Stress¶  Journal Articles
• Use of Breed-Specific Single Nucleotide Polymorphisms to Discriminate Between Holstein and Jersey Dairy Cattle Breeds  Journal Articles
• Use of Buffy Coat miRNA Profiling for Breast Cancer Prediction in Healthy Women  Journal Articles
• Using the ratio of means as the effect size measure in combining results of microarray experiments  Journal Articles
• VDR primary targets by genome-wide transcriptional profiling  Journal Articles
• VSV strains with defects in their ability to shutdown innate immunity are potent systemic anti-cancer agents  Journal Articles
• cDNA Array Analysis of Altered Gene Expression in Human Endothelial Cells in Response toChlamydia pneumoniaeInfection  Journal Articles
• cDNA array reveals differential gene expression following chronic neuroleptic administration: implications of synapsin II in haloperidol treatment  Journal Articles
• cDNA array reveals increased expression of glucose-dependent insulinotropic polypeptide following chronic clozapine treatment: role in atypical antipsychotic drug-induced adverse metabolic effects  Journal Articles