DNA, Bacterial Concept

subject area of

• Molecular characterization of the Pseudomonas aeruginosa serotype O5 (PAO1) B-band lipopolysaccharide gene cluster  Academic Article
• oriT -Directed Cloning of Defined Large Regions from Bacterial Genomes: Identification of the Sinorhizobium meliloti pExo Megaplasmid Replicator Region  Academic Article
• A Virulence and Antimicrobial Resistance DNA Microarray Detects a High Frequency of Virulence Genes in Escherichia coli Isolates from Great Lakes Recreational Waters  Academic Article
• A molecular portrait of maternal sepsis from Byzantine Troy  Academic Article
• A national investigation of the prevalence and diversity of thermophilic Campylobacter species in agricultural watersheds in Canada  Academic Article
• A novel nucleoid-associated protein specific to the actinobacteria  Academic Article
• A phosphate transport system is required for symbiotic nitrogen fixation by Rhizobium meliloti  Academic Article
• A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history  Academic Article
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Academic Article
• A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)  Academic Article
• A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives  Academic Article
• A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia  Academic Article
• A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera  Academic Article
• A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades  Academic Article
• A standardised method for interpreting the association between mutations and phenotypic drug resistance inMycobacterium tuberculosis  Academic Article
• A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria  Academic Article
• Accuracy of Results Obtained by Performing a Second Ligase Chain Reaction Assay and PCR Analysis on Urine Samples with Positive or Near-Cutoff Results in the LCx Test for Chlamydia trachomatis  Academic Article
• Adaptation in bacterial CRISPR-Cas immunity can be driven by defective phages  Academic Article
• An Endemic Strain of Staphylococcus haemolyticus Colonizing and Causing Bacteremia in Neonatal Intensive Care Unit Patients  Academic Article
• An anti-CRISPR from a virulent streptococcal phage inhibits Streptococcus pyogenes Cas9  Academic Article
• An evaluation of logic regression-based biomarker discovery across multiple intergenic regions for predicting host specificity in Escherichia coli  Academic Article
• Analysis of a 1600-kilobase Rhizobium meliloti megaplasmid using defined deletions generated in vivo.  Academic Article
• Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain  Academic Article
• Analytical Sensitivity, Reproducibility of Results, and Clinical Performance of Five PCR Assays for Detecting Chlamydia pneumoniae DNA in Peripheral Blood Mononuclear Cells  Academic Article
• Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array  Academic Article
• Application of leftover sample material from waterborne protozoa monitoring for the molecular detection of Bacteroidales and fecal source tracking markers  Academic Article
• Assessing host-specificity of Escherichia coli using a supervised learning logic-regression-based analysis of single nucleotide polymorphisms in intergenic regions  Academic Article
• Association of circulating Chlamydia pneumoniaeDNA with cardiovascular disease: a systematic review  Academic Article
• Bacillus DNA in fossil bees: an ancient symbiosis?  Academic Article
• Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit  Academic Article
• Bioinformatic evaluation of the secondary metabolism of antistaphylococcal environmental bacterial isolates  Academic Article
• BldD fromStreptomyces coelicoloris a non-essential global regulator that binds its own promoter as a dimer  Academic Article
• BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2)  Academic Article
• Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis  Academic Article
• Carbapenem-resistant Gram-negative bacilli in Canada 2009-10: results from the Canadian Nosocomial Infection Surveillance Program (CNISP)  Academic Article
• Cell-Wall Interactions and the Selective Bacteriostatic Activity of a Miniature Oligo-Acyl-Lysyl  Academic Article
• Changes in the Ultraviolet Sensitivity of Escherichia coli During Growth in Batch Cultures  Academic Article
• Characterization of Streptococcus milleri Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis  Academic Article
• Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease  Academic Article
• Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003  Academic Article
• Characterization of formulated microbial products by denaturing gradient gel electrophoresis, total cellular fatty acid analysis, and DNA microarray analysis  Academic Article
• Chlamydiae-specific proteins and indels: novel tools for studies  Academic Article
• Circulating Nucleic Acids of Chlamydia pneumoniae and Cytomegalovirus in Patients Undergoing Coronary Angiography  Academic Article
• Cloning and characterization of multiple groEL chaperonin-encoding genes in Rhizobium meliloti  Academic Article
• Cloning and characterization of the pyruvate carboxylase from Sinorhizobium meliloti Rm1021  Academic Article
• Cloning of HSP70 (dnaK) gene from Clostridium perfringens using a general polymerase chain reaction based approach  Academic Article
• Cloning of a Chromosomal Region Responsible for Streptolysin S Production in Streptococcus pyogenes  Conference Paper
• Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform: Figure 1.  Academic Article
• Colorimetric biosensing of pathogens using gold nanoparticles  Academic Article
• Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica  Academic Article
• Comparison of Gull Feces-Specific Assays Targeting the 16S rRNA Genes of Catellicoccus marimammalium and Streptococcus spp  Academic Article
• Comparison of an Industry-Derived LCx Chlamydia pneumoniae PCR Research Kit to In-House Assays Performed in Five Laboratories  Academic Article
• Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils  Academic Article
• Comparison of plasmid- and chromosome-based polymerase chain reaction assays for detecting Chlamydia trachomatis nucleic acids  Academic Article
• Comparison of ribotyping, arbitrarily primed PCR, and pulsed-field gel electrophoresis for molecular typing of Listeria monocytogenes  Academic Article
• Comparison of the Proinflammatory and Procoagulant Properties of Nuclear, Mitochondrial, and Bacterial DNA  Academic Article
• Complete sequences of a novel blaNDM-1-harbouring plasmid from Providencia rettgeri and an FII-type plasmid from Klebsiella pneumoniae identified in Canada  Academic Article
• Composition and Variation of the Human Milk Microbiota Are Influenced by Maternal and Early-Life Factors  Academic Article
• Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification  Academic Article
• Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria  Academic Article
• Controlled Expression of an rpoS Antisense RNA Can Inhibit RpoS Function in Escherichia coli  Academic Article
• Crp Is a Global Regulator of Antibiotic Production in Streptomyces  Academic Article
• Culture and Molecular Profiling of the Respiratory Tract Microbiota  Academic Article
• Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age  Academic Article
• DNA packaging bias and differential expression of gene transfer agent genes within a population during production and release of the Rhodobacter capsulatus gene transfer agent, RcGTA  Academic Article
• DNA-based real-time detection and quantification of aeromonads from fresh water beaches on Lake Ontario  Academic Article
• Defining Helicobacter pylori as a Pathogen: Strain Heterogeneity and Virulence  Conference Paper
• Detection of Plasmid-Mediated KPC-Producing Klebsiella pneumoniae in Ottawa, Canada: Evidence of Intrahospital Transmission  Academic Article
• Detection of high risk HPV and Chlamydia trachomatis in vaginal and cervical samples collected with flocked nylon and wrapped rayon dual swabs transported in dry tubes  Academic Article
• Development of Real-Time PCR Assays for Detection of the Streptococcus milleri Group from Cystic Fibrosis Clinical Specimens by Targeting the cpn60 and 16S rRNA Genes  Academic Article
• Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds  Academic Article
• Diagnosis Of Chlamydia Trachomatis Urethral Infection In Symptomatic And Asymptomatic Men By Testing First-Void Urine In A Ligase Chain Reaction Assay  Academic Article
• Diagnosis of Chlamydia trachomatis genitourinary infection in women by ligase chain reaction assay of urine  Academic Article
• Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)  Academic Article
• Distribution and Diversity of Escherichia coli Populations in the South Nation River Drainage Basin, Eastern Ontario, Canada  Academic Article
• Distribution and potential significance of a gull fecal marker in urban coastal and riverine areas of southern Ontario, Canada  Academic Article
• Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)  Academic Article
• Diversity of Integron- and Culture-Associated Antibiotic Resistance Genes in Freshwater Floc  Academic Article
• Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717)  Academic Article
• Drosophila melanogaster as an Animal Model for the Study of Pseudomonas aeruginosa Biofilm Infections In Vivo  Academic Article
• Dual Effects of MLS Antibiotics  Academic Article
• Ecological Genomics of Marine Roseobacters  Academic Article
• Endometrial microbiota is more diverse in people with endometriosis than symptomatic controls  Academic Article
• Endonuclease III and endonuclease IV protect Escherichia coli from the lethal and mutagenic effects of near-UV irradiation  Academic Article
• Evaluation of the NucliSens Basic Kit for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in Genital Tract Specimens Using Nucleic Acid Sequence-Based Amplification of 16S rRNA  Academic Article
• Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome  Academic Article
• Evolutionary and functional diversity of thePseudomonastype IVa pilin island  Academic Article
• Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis  Academic Article
• Experience with the antibiotic resistance analysis and DNA fingerprinting in tracking faecal pollution at two lake beaches  Academic Article
• Functional analysis of genes responsible for the synthesis of the B-band O antigen of Pseudomonas aeruginosa serotype O6 lipopolysaccharide The GenBank accession number for the sequence reported in this paper is AF035937.  Academic Article
• Functional annotation of putative aminoglycoside antibiotic modifying proteins in Mycobacterium tuberculosis H37Rv  Academic Article
• Genetic Analysis of Mutations Affecting pckA Regulation in Rhizobium (Sinorhizobium) meliloti  Academic Article
• Genetic and physical analyses of group E exo- mutants of Rhizobium meliloti  Academic Article
• Genetic differentiation, recombination and clonal expansion in environmental populations of Cryptococcus gattii in India  Academic Article
• Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.  Academic Article
• Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov.  Academic Article
• Heterologous expression-facilitated natural products’ discovery in actinomycetes  Academic Article
• Hidden antibiotics in actinomycetes can be identified by inactivation of gene clusters for common antibiotics  Academic Article
• High-throughput DNA sequencing technologies for water and wastewater analysis  Academic Article
• Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin  Academic Article
• IS LEPROSY SPREADING AMONG NINE-BANDED ARMADILLOS IN THE SOUTHEASTERN UNITED STATES?  Academic Article
• Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli  Academic Article
• Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor  Academic Article
• Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups  Academic Article
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Academic Article
• Immunology: Chlamydial immunoglobulin IgG and IgA antibodies in serum and semen are not associated with the presence of Chlamydia trachomatis DNA or rRNA in semen from male partners of infertile couples  Academic Article
• Incidence and Treatment Outcomes of PharyngealNeisseria gonorrhoeaeandChlamydia trachomatisInfections in Men Who Have Sex with Men: A 13‐Year Retrospective Cohort Study  Academic Article
• Induction of antimicrobial activities in heterologous streptomycetes using alleles of the Streptomyces coelicolor gene absA1  Academic Article
• Influences of non-selective interactions of nucleic acids on response rates of nucleic acid fiber optic biosensors  Conference Paper
• Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve  Academic Article
• Inhibition of Transformation of Bacillus subtilis by Heavy Metals  Academic Article
• Insertion/Deletion-Based Approach for the Detection of Escherichia coli O157:H7 in Freshwater Environments  Academic Article
• Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity  Academic Article
• Interspecific relationships of antibiotic resistance in Staphylococcus sp.: isolation and comparison of plasmids determining tetracycline resistance in S. aureus and S. epidermidis  Academic Article
• Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth  Academic Article
• Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity  Academic Article
• Laboratory Characterization of Methicillin‐ResistantStaphylococcus aureusin Canadian Hospitals: Results of 5 Years of National Surveillance, 1995–1999  Academic Article
• Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae  Academic Article
• Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa  Academic Article
• Low-Virulence Citrobacter Species Encode Resistance to Multiple Antimicrobials  Academic Article
• Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB  Academic Article
• Mechanism of Mu DNA transposition  Academic Article
• Mesalazine (5-aminosalicylic acid) alters faecal bacterial profiles, but not mucosal proteolytic activity in diarrhoea-predominant irritable bowel syndrome  Academic Article
• Microbial Diversity and Host-Specific Sequences of Canada Goose Feces  Academic Article
• Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt  Academic Article
• Molecular analysis of the leukotoxin determinants from Pasteurella haemolytica serotypes 1 to 16  Academic Article
• Molecular epidemiology of vancomycin-resistant enterococcal bacteraemia: results from the Canadian Nosocomial Infection Surveillance Program, 1999-2009  Academic Article
• Molecular mechanisms of cefoxitin resistance in Escherichia coli from the Toronto area hospitals  Academic Article
• Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus  Academic Article
• Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia  Academic Article
• Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.  Academic Article
• Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae  Academic Article
• Molecular signatures for the phylum Synergistetes and some of its subclades  Academic Article
• Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment  Academic Article
• Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario  Academic Article
• Multiple roles for divalent metal ions in DNA transposition: distinct stages of Tn10 transposition have different Mg2+ requirements.  Academic Article
• Multiplex Polymerase Chain Reaction for the Diagnosis of Sexually Transmitted Diseases  Academic Article
• NAD(P) ⁺ -Malic Enzyme Mutants of Sinorhizobium sp. Strain NGR234, but Not Azorhizobium caulinodans ORS571, Maintain Symbiotic N ₂ Fixation Capabilities  Academic Article
• Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti  Academic Article
• Nucleotide sequence of katG, encoding catalase HPI of Escherichia coli  Academic Article
• On the Road to Bacterial Cell Death  Academic Article
• Optimization and validation of rep-PCR genotypic libraries for microbial source tracking of environmental Escherichia coli isolates  Academic Article
• Oral Treatment with Live Lactobacillus reuteri Inhibits the Allergic Airway Response in Mice  Academic Article
• Overexpression of the dctA gene in Rhizobium meliloti: effect on transport of C₄ dicarboxylates and symbiotic nitrogen fixation  Conference Paper
• Overexpression, Purification, and Characterization of VanX, a D-, D-Dipeptidase which Is Essential for Vancomycin Resistance in Enterococcus faecium BM4147  Academic Article
• Overproduction, solubilization, purification and DNA-binding properties of AmpR from Citrobacter freundii  Academic Article
• Phenotypic Diversity Caused by Differential RpoS Activity among Environmental Escherichia coli Isolates  Academic Article
• Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces  Academic Article
• Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives  Academic Article
• Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.  Academic Article
• Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera  Academic Article
• Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera  Academic Article
• Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov.  Academic Article
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Academic Article
• Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov.  Academic Article
• Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades  Academic Article
• Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov.  Academic Article
• Pollux: platform independent error correction of single and mixed genomes  Academic Article
• Polymorphism and selection of rpoS in pathogenic Escherichia coli  Academic Article
• Predation in Homogeneous and Heterogeneous Phage Environments Affects Virulence Determinants of Pseudomonas aeruginosa  Academic Article
• Programming a topologically constrained DNA nanostructure into a sensor  Academic Article
• Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces a aThe GenBank accession numbers for the sequences reported in this paper are indicated in the text.  Academic Article
• Pyrosequencing reveals the complex polymicrobial nature of invasive pyogenic infections: microbial constituents of empyema, liver abscess, and intracerebral abscess  Academic Article
• Rapidly prototyped multi-scale electrodes to minimize the voltage requirements for bacterial cell lysis  Academic Article
• Recent Developments in the Molecular Biology of Extremely Halophilic Bacteria  Academic Article
• Redesigned purification yields a fully functional PutA protein dimer from Escherichia coli.  Academic Article
• Regulatory evolution at the host–pathogen interface  Academic Article
• Replicate PCR Testing and Probit Analysis for Detection and Quantitation of Chlamydia pneumoniae in Clinical Specimens  Academic Article
• Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species  Academic Article
• Robust demarcation of fourteen different species groups within the genus Streptococcus based on genome-based phylogenies and molecular signatures  Academic Article
• Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti  Academic Article
• Role of intestinal microbiota and metabolites on gut homeostasis and human diseases  Academic Article
• RpoS regulation of gene expression during exponential growth of Escherichia coli K12  Academic Article
• Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849  Academic Article
• Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes  Academic Article
• Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes  Academic Article
• Signals for local and systemic responses of plants to pathogen attack  Academic Article
• Signature proteins for the major clades of Cyanobacteria  Academic Article
• Site-directed mutagenesis and DNA sequence of pckA of Rhizobium NGR234, encoding phosphoenolpyruvate carboxykinase: gluconeogenesis and host-dependent symbiotic phenotype  Academic Article
• Smoking, season, and detection of chlamydia pneumoniaeDNA in clinically stable COPD patients  Academic Article
• Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation  Academic Article
• Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory  Academic Article
• Stationary phase-induction of G→T mutations in Escherichia coli  Academic Article
• Streptomyces IHF uses multiple interfaces to bind DNA  Academic Article
• Structural Insights into the Regulation of Foreign Genes in Salmonella by the Hha/H-NS Complex  Academic Article
• Targeted Mutagenesis of Burkholderia thailandensis and Burkholderia pseudomallei through Natural Transformation of PCR Fragments  Academic Article
• Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death  Academic Article
• The bldD Gene of Streptomyces coelicolor A3(2): a Regulatory Gene Involved in Morphogenesis and Antibiotic Production  Academic Article
• The BldD Protein from Streptomyces coelicolor Is a DNA-Binding Protein  Academic Article
• The Divided Bacterial Genome: Structure, Function, and Evolution  Academic Article
• The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly  Academic Article
• The Recovery, Interpretation and Use of Ancient Pathogen Genomes  Academic Article
• The Sinorhizobium meliloti chromosomal origin of replication  Academic Article
• The complete sequence of the 1,683-kb pSymB megaplasmid from the N ₂ -fixing endosymbiont Sinorhizobium meliloti  Academic Article
• The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients  Academic Article
• The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products  Academic Article
• The effects of inhaled aztreonam on the cystic fibrosis lung microbiome  Academic Article
• The genus Prevotella in cystic fibrosis airways  Academic Article
• The relative contribution of methanotrophs to microbial communities and carbon cycling in soil overlying a coal-bed methane seep  Academic Article
• The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria  Academic Article
• The solution structure of Lac repressor headpiece 62 complexed to a symmetrical lac operator  Academic Article
• The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga–Flavobacterium–Bacteroides division The GenBank accession numbers for the sequences reported in this paper are AY017380, AY017381, AY017382 and AY017383.  Academic Article
• Transcriptional regulation of ACC deaminase gene expression inPseudomonas putidaUW4  Academic Article
• Twenty-Five-Year Outbreak of Pseudomonas aeruginosa Infecting Individuals with Cystic Fibrosis: Identification of the Prairie Epidemic Strain  Academic Article
• Type 2 diabetes influences bacterial tissue compartmentalisation in human obesity  Academic Article
• Urine Specimens from Pregnant and Nonpregnant Women Inhibitory to Amplification of Chlamydia trachomatis Nucleic Acid by PCR, Ligase Chain Reaction, and Transcription-Mediated Amplification: Identification of Urinary Substances Associated with Inhibition and Removal of Inhibitory Activity  Academic Article
• Use of Neonatal Fostering To Remove Helicobacter spp. from Deer Mice (Peromyscus maniculatus).  Academic Article
• Virulence of a Porphyromonas gingivalis W83 mutant defective in the prtH gene  Academic Article
• Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis  Academic Article
• Yersinia pestis and the three plague pandemics–Authors' reply  Academic Article
• Yersinia pestis genotyping.  Academic Article
• “Colony Sequencing”: Direct Sequencing of Plasmid DNA from Bacterial Colonies  Academic Article