selected scholarly activity
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books
- Molecular Techniques in Food Biology 2018
- Next-Generation Sequencing: Current Technologies and Applications 2014
- Rapidly Evolving Genes and Genetic Systems 2012
- Evolution in the fast lane: rapid evolution of genes and genetic systems 2012
- Microbial Population Genetics 2010
- Essentials of Life Science 2006
- Evolutionary Genetics of Fungi 2005
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chapters
- Molecular Techniques and Foodstuffs. 421-434. 2018
- Molecular Identification and Distribution of Yeasts in Fruits. 117-144. 2018
- Molecular Techniques and Foodstuffs: Innovative Fingerprints, Then What?. 423-434. 2018
- Molecular Techniques for Making Recombinant Enzymes Used in Food Processing. 95-114. 2018
- Molecular identification and distribution of yeasts in fruits. 115-144. 2018
- Molecular mechanisms of fungal adaptive evolution. Grand Challenges in Biology and Biotechnology. 409-435. 2018
- Recombinant Enzymes Used in Fruit and Vegetable Juice Industry. 375-395. 2017
- Recombinant Enzymes Used in Fruit and Vegetable Juice Industry. 375-395. 2017
- Recombinant Enzymes in the Meat Industry and the Regulations of Recombinant Enzymes in Food Processing. 363-374. 2017
- Recombinant Enzymes in the Meat Industry and the Regulations of Recombinant Enzymes in Food Processing. 363-374. 2017
- Biotechnology of Wine Yeasts. 44-54. 2016
- Filamentous Fungi in Fermented Foods. 45-75. 2016
- Molecular Mechanisms of Nematode-Nematophagous Microbe Interactions: Basis for Biological Control of Plant-Parasitic Nematodes. Annual Review of Phytopathology. 67-95. 2015
- Microbial Ecology in the Age of Metagenomics: An Introduction. 475-479. 2015
- Microbial ecology in the age of metagenomics: an introduction. 1-5. 2013
- Rapid evolution in experimental populations of all major life forms. 40-52. 2012
- Experimental and natural evolution in the Cryptococcus neoformans and Cryptococcus gattii species complex. 208-230. 2012
- Rapidly Evolving Genes and Genetic Systems Introduction. 1-10. 2012
- Rapidly Evolving Genes and Genetic Systems Preface. XVI-XVI. 2012
- Microbial ecology in the age of metagenomics. 111-122. 2011
- Cryptococcosis in Asia. 287-298. 2011
- Population Structure and Ecology of Cryptococcus. 97-112. 2011
- Population Structure and Ecology ofCryptococcus neoformansandCryptococcus gattii. 97-111. 2011
- Comparative Microbial Genomics: Analystical Tools, Population Genetic Patterns and Evolutionary Implications. 15-47. 2010
- Metagenomics and ecosystems biology: conceptual frameworks, tools, and methods. 1-13. 2010
- Population Genetics in the Age of Metagenomics: Impact on Investigations of Viral, Bacterial, Archaeal and Eukaryotic Microbial Communities. 189-204. 2010
- Population Genetics of the Symbiotic Nitrogen-fixing Bacteria Rhizobia. 79-95. 2010
- Reproduction and sex in microorganisms 2009
- Using 1-2 individual organisms to address population genetic questions 2008
- Origin, Evolution, and Extinction of Asexual Fungi: Experimental Tests UsingCryptococcus neoformans. 459-475. 2007
- Origin, evolution and extinction of asexual fungi: experimental tests using Cryptococcus neoformans.. 461-476. 2007
- Fungal mitochondrial inheritance and evolution. 221-252. 2005
- Molecular population genetics of basidiomycete fungi.. 189-220. 2005
- Poster Summaries. Current plant science and biotechnology in agriculture. 398-430. 2005
- Gene Genealogical analyses of human fungal pathogens. 299-318. 2004
- Genotypic and phenotypic diversities of human pathogenic yeasts. 67-85. 2003
- Molecular population genetics of the commercial mushroom Agaricus bisporus.. 35-50. 2003
- Molecular methods to identify pathogenic fungi. 677-702. 2002
- Population genetic analyses of medically important fungi.. 703-722. 2002
- Population genetic analyses of Candida. 55-64. 2002
- Strain variation and clonality in species of Candida and Cryptococcus neoformans.. 739-750. 2002
-
conferences
- Barcoding wild edible mushrooms in southwestern China. Genome. 297-298. 2015
- Effective permeation of a novel topical drug that kills the main causative agent of nail infection. Mycoses. 125-125. 2012
- An outdoor navigation aid system for the visually impaired. IEEE International Conference on Industrial Engineering and Engineering Management. 2435-2438. 2010
- Decoupling Control Strategy of Single Phase SPWM Parallel Inverter. IEEE PEDG 2010: THE 2ND INTERNATIONAL SYMPOSIUM ON POWER ELECTRONICS FOR DISTRIBUTED GENERATION SYSTEMS. 210-213. 2010
- Introduction / Introduction. Genome. v-vi. 2005
- Functional Analysis of Genes of Unknown Functions in Sinorhizobium meliloti 1021. Current plant science and biotechnology in agriculture. 115-118. 2005
- Genetic variation among natural strains of Sinorhizobium meliloti. Current plant science and biotechnology in agriculture. 418-418. 2005
- Molecular typing of pathogenic fungi. Medical Mycology. 189-197. 2000
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journal articles
- Biocontrol potential of Bacillus velezensis SEC-024A against southern blight of industrial hemp. Industrial Crops and Products. 222:119767. 2024
- Pan-genome analysis reveals genomic variations during enoki mushroom domestication, with emphasis on genetic signatures of cap color and stipe length.. Journal of Advanced Research. S2090-1232(24)00497-1. 2024
- Effect of steam explosion pretreatment on the fermentation characteristics of polysaccharides from tea residue.. International Journal of Biological Macromolecules. 279:134920. 2024
- Genomic and Transcriptomic Analyses Revealed DdSTE2 Play a Role in Constricting Ring Formation in the Nematode-Trapping Fungi Drechslerella dactyloides.. Microorganisms. 12:2190. 2024
- DNA metabarcoding analyses reveal fine-scale microbiome structures on Western Canadian bat wings.. Microbiology spectrum. 12:e0037624. 2024
- What in Earth? Analyses of Canadian soil populations of Aspergillus fumigatus.. Canadian Journal of Microbiology. 2024
- Achieving ultrahigh energy storage performance of PBLZST-based antiferroelectric composite ceramics via interfacial polarization engineering. Journal of the European Ceramic Society. 44:7642-7650. 2024
- The “crosstalk” between gut microbiota, metabolites and genes in diet-induced hepatic steatosis mice intervened with Cordyceps guangdongensis polysaccharides. International Journal of Biological Macromolecules. 277:134607-134607. 2024
- High-Quality Complete Genome Resource for Dickeya dadantii Type Strain DSM 18020 via PacBio Sequencing. Agronomy. 14:1342-1342. 2024
- Microvascular destabilization and intricated network of the cytokines in diabetic retinopathy: from the perspective of cellular and molecular components. Cell and Bioscience. 14:85. 2024
- Greenhouses represent an important evolutionary niche for Alternaria alternata. Microbiology spectrum. 12:e0039024. 2024
- Hope on the Horizon? Aptamers in Diagnosis of Invasive Fungal Infections. Genes. 15:733-733. 2024
- High diversity within and low but significant genetic differentiation among geographic and temporal populations of the global Streptococcus pneumoniae. Canadian Journal of Microbiology. 70:226-237. 2024
- Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni. Genome. 67:189-203. 2024
- Implementation of early essential neonatal care for newborns delivered by cesarean section in Jiaxing: a single-center prospective randomized controlled trial. International Breastfeeding Journal. 19:31. 2024
- Ampelopsis grossedentata Represents a New Host of the 16SrI Group Phytoplasma Associated with Yellow Leaf Symptoms in China. Plant Disease. 108:780-780. 2024
- From Nature to Design: Tailoring Pure Mycelial Materials for the Needs of Tomorrow. Journal of Fungi. 10:183-183. 2024
- Multi-locus sequence typing and phylogenetics of Cryptococcus neoformans AD hybrids. Fungal Genetics and Biology. 170:103861-103861. 2024
- Associations between Genomic Variants and Antifungal Susceptibilities in the Archived Global Candida auris Population. Journal of Fungi. 10:86-86. 2024
- Population genomic analyses reveal high diversity, recombination and nosocomial transmission among Candida glabrata (Nakaseomyces glabrata) isolates causing invasive infections. Microbial Genomics. 10. 2024
- Characterization of regulatory genes Plhffp and Plpif1 involved in conidiation regulation in Purpureocillium lavendulum. Frontiers in Microbiology. 15:1352989. 2024
- Endosymbiotic bacteria within the nematode-trapping fungus Arthrobotrys musiformis and their potential roles in nitrogen cycling. Frontiers in Microbiology. 15:1349447. 2024
- High species diversity in Diaporthe associated with citrus diseases in China. Persoonia. 51:229-256. 2023
- Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans species complex from China, including the diploid VNIII isolates from HIV-infected patients in Chongqing region. Medical Mycology. 61:myad119. 2023
- Ethanol mediates the interaction between Caenorhabditis elegans and the nematophagous fungus Purpureocillium lavendulum. Microbiology spectrum. 11:e0127023. 2023
- Mitogenome Variations in a Global Population of Aspergillus fumigatus. Journal of Fungi. 9:995-995. 2023
- Validity and Reliability of the Perinatal Grief Intensity Scale in a Chinese Clinical Sample: A Prospective Cross-Sectional Study. Clinical and Experimental Obstetrics and Gynecology. 50:189-189. 2023
- Effects of Cadmium Stress on Bacterial and Fungal Communities in the Whitefly Bemisia tabaci. International Journal of Molecular Sciences. 24:13588-13588. 2023
- Lodderomyces elongisporus: An emerging human fungal pathogen. PLoS Pathogens. 19:e1011613-e1011613. 2023
- Genetic structure and triazole resistance among Aspergillus fumigatus populations from remote and undeveloped regions in Eastern Himalaya. Clinical and Vaccine Immunology. 8:e0007123. 2023
- Engineering a Co/Co2P Mott–Schottky heterostructure encased in a hollow N-doped carbon polyhedron as an advanced nanoreactor towards high-efficiency electrocatalytic oxygen evolution. Materials Chemistry Frontiers. 7:3641-3649. 2023
- Candida auris in Dog Ears. Journal of Fungi. 9:720-720. 2023
- Genomic Analyses of a Fungemia Outbreak Caused by Lodderomyces elongisporus in a Neonatal Intensive Care Unit in Delhi, India. mBio. 14:e0063623. 2023
- Analyses of genetic diversity reveal major forces impacting a local population of the gourmet mushroom Cantharellus enelensis. Mycosystema. 42:1240-1257. 2023
- Genetic and Environmental Factors Influencing the Production of Select Fungal Colorants: Challenges and Opportunities in Industrial Applications. Journal of Fungi. 9:585-585. 2023
- Patterns of Global Genetic Diversity of Streptococcus pneumoniae Inferred Based on Archived Multilocus Sequence Typing Data 2023
- Clonal Expansion in Multiple Phyllosticta Species Causing Citrus Black Spot or Similar Symptoms in China. Journal of Fungi. 9:449-449. 2023
- Insight into the evolutionary and domesticated history of the most widely cultivated mushroom Agaricus bisporus via mitogenome sequences of 361 global strains. BMC Genomics. 24:182. 2023
- Whole-genome sequencing reveals putative underlying mechanisms of biocontrol capability of IBFCBF-5. Acta Physiologiae Plantarum. 45. 2023
- Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants. Microbiome. 11:48. 2023
- A new multiaxial fatigue life prediction method based on grey theory under small sample condition. Fatigue & Fracture of Engineering Materials & Structures (FFEMS). 46:940-954. 2023
- Global Analyses of Multi-Locus Sequence Typing Data Reveal Geographic Differentiation, Hybridization, and Recombination in the Cryptococcus gattii Species Complex. Journal of Fungi. 9:276-276. 2023
- Correction to: S8.5c MLST genotyping and phylogenetics of AD-hybrids. Medical Mycology. 61:myad007. 2023
-
The catalase‐peroxidase
PiCP1 plays a critical role in abiotic stress resistance, pathogenicity and asexual structure development in Phytophthora infestans. Environmental Microbiology. 25:532-547. 2023 - Assessing thermal adaptation of a global sample of Aspergillus fumigatus: Implications for climate change effects. Frontiers in Public Health. 11:1059238. 2023
- Bacterial Epidemiology and Antimicrobial Resistance Profiles of Respiratory Specimens of Children with Pneumonia in Hainan, China. Infection and Drug Resistance. Volume 16:249-261. 2023
- Expression of miR-210-3p in the aqueous humor of patients with age-related cataracts and its effect on human lens epithelial cell injury induced by hydrogen peroxide. Arquivos Brasileiros de Oftalmologia. 87:e20220274. 2023
- Genome-wide comparisons reveal broad variations in intraspecific SNP frequencies among species in Agaricomycetes, Basidiomycota. F1000Research. 12:200-200. 2023
- The development of an ingestible biosensor for the characterization of gut metabolites related to major depressive disorder: hypothesis and theory. Frontiers in Systems Biology. 3:1274184. 2023
- Production of Fungal Pigments: Molecular Processes and Their Applications. Journal of Fungi. 9:44-44. 2022
- Genotypic diversity and antifungal susceptibility of Scedosporium species from clinical settings in China. Mycoses. 65:1159-1169. 2022
- Analyses of the Global Multilocus Genotypes of the Human Pathogenic Yeast Cryptococcus neoformans Species Complex. Genes. 13:2045-2045. 2022
- S8.5c MLST genotyping and phylogenetics of AD-hybrids. Medical Mycology. 60:29-29. 2022
- Assessing global fungal threats to humans. mLife. 1:223-240. 2022
- Tackling the emerging threat of antifungal resistance to human health. Nature Reviews Microbiology. 20:557-571. 2022
- Genetic Structure and Triazole Antifungal Susceptibilities of Alternaria alternata from Greenhouses in Kunming, China. Microbiology spectrum. 10:e0038222. 2022
- Genetic Analyses of Discrete Geographic Samples of a Golden Chanterelle in Canada Reveal Evidence for Recent Regional Differentiation. Genes. 13:1110-1110. 2022
- Microbial isolates with Anti-Pseudogymnoascus destructans activities from Western Canadian bat wings. Scientific Reports. 12:9895. 2022
- Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure. Journal of Visualized Experiments. 2022. 2022
- Genetic Diversity and Population Structure of Fusarium commune Causing Strawberry Root Rot in Southcentral China. Genes. 13:899-899. 2022
- Correction: Gao et al. Haplotype-Resolved Genome Analyses Reveal Genetically Distinct Nuclei within a Commercial Cultivar of Lentinula edodes. J. Fungi 2022, 8, 167. Journal of Fungi. 8:496-496. 2022
- Genetic Differentiation and Widespread Mitochondrial Heteroplasmy among Geographic Populations of the Gourmet Mushroom Thelephora ganbajun from Yunnan, China. Genes. 13:854-854. 2022
- Genetic Diversity and Azole Resistance Among Natural Aspergillus fumigatus Populations in Yunnan, China. Microbial Ecology. 83:869-885. 2022
- Integrated proteomic and metabolomic analyses reveal significant changes in chloroplasts and mitochondria of pepper (Capsicum annuum L.) during Sclerotium rolfsii infection. Journal of Microbiology. 60:511-525. 2022
- Candida auris on Apples: Diversity and Clinical Significance. mBio. 13:e0051822. 2022
- The phyllosphere microbiome shifts toward combating melanose pathogen. Microbiome. 10:56. 2022
- First Report of Pythium aphanidermatum Causing Crown and Root Rot on Industrial Hemp in China. Plant Disease. 106:1076-1076. 2022
- Extensive Diversity and Prevalent Fluconazole Resistance among Environmental Yeasts from Tropical China. Genes. 13:444-444. 2022
- Haplotype-Resolved Genome Analyses Reveal Genetically Distinct Nuclei within a Commercial Cultivar of Lentinula edodes. Journal of Fungi. 8:167-167. 2022
- Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales. New Phytologist. 233:1383-1400. 2022
- Phenotypic Plasticity in the Productions of Virulence Factors Within and Among Serotypes in the Cryptococcus neoformans Species Complex. Mycopathologia. 187:65-83. 2022
- Origins and spread of plant fungal and oomycete disease outbreaks. Journal of Plant Protection. 49:283-297. 2022
- A simple and rapid technique of template preparation for PCR. Frontiers in Microbiology. 13:1024827. 2022
- Bacterial and fungal communities within and among geographic samples of the hemp pest Psylliodes attenuata from China. Frontiers in Microbiology. 13:964735. 2022
- Editorial: Molecular Epidemiology of Fungal Infections. Frontiers in Cellular and Infection Microbiology. 12:939140. 2022
- Population genomic analyses reveal evidence for limited recombination in the superbug Candida auris in nature. Computational and Structural Biotechnology Journal. 20:3030-3040. 2022
- Taxonomic and Metabolite Diversities of Moss-Associated Actinobacteria from Thailand. Metabolites. 12:22-22. 2021
- Genetic Diversity and Dispersal of Aspergillus fumigatus in Arctic Soils. Genes. 13:19-19. 2021
- Diversity, Dispersal and Mode of Reproduction of Amanita exitialis in Southern China. Genes. 12:1907-1907. 2021
- Dynamic evolution of eukaryotic mitochondrial and nuclear genomes: a case study in the gourmet pine mushroom Tricholoma matsutake. Environmental Microbiology. 23:7214-7230. 2021
- Fungistatic Mechanism of Ammonia against Nematode-Trapping Fungus Arthrobotrys oligospora, and Strategy for This Fungus To Survive Ammonia. mSystems. 6:e0087921. 2021
- Genetic Analyses of Amphotericin B Susceptibility in Aspergillus fumigatus. Journal of Fungi. 7:860-860. 2021
- Global patterns in culturable soil yeast diversity. iScience. 24:103098-103098. 2021
- Update on Pulmonary Cryptococcosis. Mycopathologia. 186:717-728. 2021
- Abundant Genetic Diversity and Extensive Differentiation among Geographic Populations of the Citrus Pathogen Diaporthe citri in Southern China. Journal of Fungi. 7:749-749. 2021
- Historical Differentiation and Recent Hybridization in Natural Populations of the Nematode-Trapping Fungus Arthrobotrys oligospora in China. Microorganisms. 9:1919-1919. 2021
- Appressorial interactions with host and their evolution. Fungal Diversity. 110:75-107. 2021
- Genomic and Experimental Investigations of Auriscalpium and Strobilurus Fungi Reveal New Insights into Pinecone Decomposition. Journal of Fungi. 7:679-679. 2021
- First Report of Fusarium fujikuroi Causing Bulb Rot on Lilium lancifolium in China. Plant Disease. 105:2254-2254. 2021
- Genetic and Phenotypic Diversities in Experimental Populations of Diploid Inter-Lineage Hybrids in the Human Pathogenic Cryptococcus. Microorganisms. 9:1579-1579. 2021
- Genotypic diversity and antifungal susceptibility of environmental isolates of Cryptococcus neoformans from the Yangtze River Delta region of East China. Medical Mycology. 59:653-663. 2021
- Defining a species in fungal plant pathology: beyond the species level. Fungal Diversity. 109:267-282. 2021
- Current Practices for Reference Gene Selection in RT-qPCR of Aspergillus: Outlook and Recommendations for the Future. Genes. 12:960-960. 2021
- Global Temporal Patterns of Age Group and Sex Distributions of COVID-19. Infectious Disease Reports. 13:582-596. 2021
- Author Correction: Genetic Factors and Genotype-Environment Interactions Contribute to Variation in Melanin Production in the Fungal Pathogen Cryptococcus neoformans. Scientific Reports. 11:12860. 2021
- Diversity and Function of Appressoria. Pathogens. 10:746-746. 2021
- Genome-Wide Association Analysis for Triazole Resistance in Aspergillus fumigatus. Pathogens. 10:701-701. 2021
- Genetic Diversity and Population Structure ofPhyllosticta citriasianain China. Phytopathology. 111:850-861. 2021
- Environmental Isolation of Candida auris from the Coastal Wetlands of Andaman Islands, India. mBio. 12:e03181-e03120. 2021
- Phylogenetic Analyses of New Aquatic Hyphomycetes Provide Molecular Evidence for <em>Microthyriaceae</em> (<em>Dothideomycetes, Ascomycota</em>) Anamorph 2021
- Exploring the Species Diversity of Edible Mushrooms in Yunnan, Southwestern China, by DNA Barcoding. Journal of Fungi. 7:310-310. 2021
- What Are the Best Parents for Hybrid Progeny? An Investigation into the Human Pathogenic Fungus Cryptococcus. Journal of Fungi. 7:299-299. 2021
- Isolation and characterization of antagonistic Paenibacillus polymyxa HX-140 and its biocontrol potential against Fusarium wilt of cucumber seedlings. BMC Microbiology. 21:75. 2021
- Landscape Genetic Connectivity and Evidence for Recombination in the North American Population of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans. Journal of Fungi. 7:182-182. 2021
- Extensive Genetic Diversity and Widespread Azole Resistance in Greenhouse Populations of Aspergillus fumigatus in Yunnan, China. Clinical and Vaccine Immunology. 6:e00066-e00021. 2021
- Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee. Microbiology Resource Announcements. 10:e00799-e00720. 2021
- Colonisation and Transmission Dynamics of Candida auris among Chronic Respiratory Diseases Patients Hospitalised in a Chest Hospital, Delhi, India: A Comparative Analysis of Whole Genome Sequencing and Microsatellite Typing. Journal of Fungi. 7:81-81. 2021
- Characterization of the complete mitochondrial genome of the nematophagous fungus Purpureocillium lavendulum. Mitochondrial DNA Part B: Resources. 6:33-35. 2021
- Culture-Based and Culture-Independent Assessments of Endophytic Fungal Diversity in Aquatic Plants in Southwest China. Frontiers in Fungal Biology. 2:692549. 2021
- Cyanescent Gyroporus (Gyroporaceae, Boletales) from China. MycoKeys. 81:165-183. 2021
- Development of a Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Phytopythium vexans. Frontiers in Microbiology. 12:720485. 2021
- Evidence for Persistent Heteroplasmy and Ancient Recombination in the Mitochondrial Genomes of the Edible Yellow Chanterelles From Southwestern China and Europe. Frontiers in Microbiology. 12:699598. 2021
- Is Natural Population of Candida tropicalis Sexual, Parasexual, and/or Asexual?. Frontiers in Cellular and Infection Microbiology. 11:751676. 2021
- Linking Plant Secondary Metabolites and Plant Microbiomes: A Review. Frontiers in Plant Science. 12:621276. 2021
- Molecular Markers Reveal Epidemiological Patterns and Evolutionary Histories of the Human Pathogenic Cryptococcus. Frontiers in Cellular and Infection Microbiology. 11:683670. 2021
- Species Diversity and Antifungal Susceptibilities of Oral Yeasts from Patients with Head and Neck Cancer. Infection and Drug Resistance. Volume 14:2279-2288. 2021
- Two new asexual genera and six new asexual species in the family Microthyriaceae (Dothideomycetes, Ascomycota) from China. MycoKeys. 85:1-30. 2021
- Variations in sexual fitness among natural strains of the opportunistic human fungal pathogen Aspergillus fumigatus. Infection, Genetics and Evolution. 87:104640-104640. 2021
- Cryptococcus Neoformans Meningitis Cases Among China’s HIV-Infected Population may have been Severely Under-Reported. Mycopathologia. 185:971-974. 2020
- Sphinganine-Analog Mycotoxins (SAMs): Chemical Structures, Bioactivities, and Genetic Controls. Journal of Fungi. 6:312-312. 2020
- Fungal Pigments and Their Roles Associated with Human Health. Journal of Fungi. 6:280-280. 2020
- Genome-Wide Identification and Expression Analysis of Udp-Glucuronosyltransferases in the Whitefly Bemisia Tabaci (Gennadius) (HemipterA: Aleyrodidae). International Journal of Molecular Sciences. 21:8492-8492. 2020
- Immunomodulatory Effects of Edible and Medicinal Mushrooms and Their Bioactive Immunoregulatory Products. Journal of Fungi. 6:269-269. 2020
- Genome Sequence Resource for the Ramie Oomycete Pathogen Phytopythium vexans HF1. Molecular Plant-Microbe Interactions. 33:1270-1273. 2020
- Comparative Genome Sequence Analyses of Geographic Samples of Aspergillus fumigatus—Relevance for Amphotericin B Resistance. Microorganisms. 8:1673-1673. 2020
- Functional Characterization of Core Regulatory Genes Involved in Sporulation of the Nematophagous Fungus Purpureocillium lavendulum. Clinical and Vaccine Immunology. 5:e00932-e00920. 2020
- Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications. 11:5125. 2020
- Fungi–Nematode Interactions: Diversity, Ecology, and Biocontrol Prospects in Agriculture. Journal of Fungi. 6:206-206. 2020
- Molecular identification of Cryptococcus gattii from cerebrospinal fluid using single-cell sequencing: A case study. Journal of Infection. 81:634-638. 2020
- Fungal species concepts in the genomics era. Genome. 63:459-468. 2020
- Phylogeny and species delimitation of Strobilomyces (Boletaceae), with an emphasis on the Asian species. Persoonia. 44:113-139. 2020
- Molecular Diagnostics and Detection of Oomycetes on Fiber Crops. Plants. 9:769-769. 2020
- Mitochondrial COI Sequence Variations within and among Geographic Samples of the Hemp Pest Psylliodes attenuata from China. Insects. 11:370-370. 2020
- Expansion of Adhesion Genes Drives Pathogenic Adaptation of Nematode-Trapping Fungi. iScience. 23:101057-101057. 2020
- Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus. International Journal of Systematic and Evolutionary Microbiology. 70:3433-3439. 2020
- Morphological and molecular characterization of Orbilia pseudopolybrocha and O. tonghaiensis, two new species of Orbiliaceae from China. International Journal of Systematic and Evolutionary Microbiology. 70:2664-2676. 2020
- Molecular Diagnostics and Pathogenesis of Fungal Pathogens on Bast Fiber Crops. Pathogens. 9:223-223. 2020
- Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth. Microbiological Research. 233:126395-126395. 2020
- Patterns of allele distribution in a hybrid population of the Cryptococcus neoformans species complex. Mycoses. 63:275-283. 2020
- Beltrania sinensis sp. nov., an endophytic fungus from China and a key to species of the genus. International Journal of Systematic and Evolutionary Microbiology. 70:1178-1185. 2020
- Hybridization Facilitates Adaptive Evolution in Two Major Fungal Pathogens. Genes. 11:101-101. 2020
- Aspergillus Species in Lower Respiratory Tract of Hospitalized Patients from Shanghai, China: Species Diversity and Emerging Azole Resistance. Infection and Drug Resistance. Volume 13:4663-4672. 2020
- Comparative Analyses of Mitochondrial Genomes Provide Evolutionary Insights Into Nematode-Trapping Fungi. Frontiers in Microbiology. 11:617. 2020
- Epidemiological Characteristics and Clinical Features of Patients Infected With the COVID-19 Virus in Nanchang, Jiangxi, China. Frontiers in Medicine. 7:571069. 2020
- Fusarium Species and Fusarium oxysporum Species Complex Genotypes Associated With Yam Wilt in South-Central China. Frontiers in Microbiology. 11:1964. 2020
- Mitochondrial Genome Polymorphisms in the Human Pathogenic Fungus Cryptococcus neoformans. Frontiers in Microbiology. 11:706. 2020
- Mitochondrial Multilocus DNA Sequence Analyses Reveal Limited Genetic Variability within and Consistent Differences between Species Within the Global Matsutake Species Complex. Acta Edulis Fungi. 27:1-19. 2020
- Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis. PLoS ONE. 15:e0239890-e0239890. 2020
- Selection of Reference Genes for qPCR Analyses of Gene Expression in Ramie Leaves and Roots across Eleven Abiotic/Biotic Treatments. Scientific Reports. 9:20004. 2019
- Genetic Changes in Experimental Populations of a Hybrid in the Cryptococcus neoformans Species Complex. Pathogens. 9:3-3. 2019
- Functional analysis of CfSnf1 in the development and pathogenicity of anthracnose fungus Colletotrichum fructicola on tea-oil tree. BMC Genetics. 20:94. 2019
- Microbial communities and soil chemical features associated with commercial production of the medicinal mushroom Ganoderma lingzhi in soil. Scientific Reports. 9:15839. 2019
- Fantastic yeasts and where to find them: the discovery of a predominantly clonal Cryptococcus deneoformans population in Saudi Arabian soils. FEMS Microbiology Ecology. 95:fiz122. 2019
- Contemporary Gene Flow is a Major Force Shaping the Aspergillus fumigatus Population in Auckland, New Zealand. Mycopathologia. 184:479-492. 2019
- Adiponectin receptor PAQR-2 signaling senses low temperature to promote C. elegans longevity by regulating autophagy. Nature Communications. 10:2602. 2019
- Identification of the Pathogens Causing Anthracnose of Camellia oleifera in Nursery and Their Resistence to Fungicides. Linye Kexue/Scientia Silvae Sinicae. 55:85-94. 2019
- An efficient gene disruption system for the nematophagous fungus Purpureocillium lavendulum. Fungal Biology. 123:274-282. 2019
- Genotypic and Phenotypic Analyses of Two “Isogenic” Strains of the Human Fungal Pathogen Cryptococcus neoformans var. neoformans. Mycopathologia. 184:195-212. 2019
- Signal pathways involved in microbe–nematode interactions provide new insights into the biocontrol of plant-parasitic nematodes. Philosophical Transactions of the Royal Society of London. Biological Sciences. 374:20180317-20180317. 2019
- Trends in DNA barcoding and metabarcoding. Genome. 62:v-viii. 2019
- Genotypic diversity and antifungal susceptibility of Cryptococcus neoformans isolates from paediatric patients in China. Mycoses. 62:171-180. 2019
- Characterization of the complete mitochondrial genome of Drechslerella brochopaga, a fungal species trapping nematodes with constricting rings. Mitochondrial DNA Part B: Resources. 4:858-859. 2019
- Complete mitochondrial genome and phylogenetic analysis of Orbilia dorsalia, a species producing mature sexual structures on culture. Mitochondrial DNA Part B: Resources. 4:573-574. 2019
- Analyses of the Global Multilocus Genotypes of the Human Pathogenic Yeast Candida tropicalis. Frontiers in Microbiology. 10:900. 2019
- Bacteria in Cancer Therapeutics: A Framework for Effective Therapeutic Bacterial Screening and Identification. Journal of Cancer. 10:1781-1793. 2019
- High Genetic Diversity and Species Complexity of Diaporthe Associated With Grapevine Dieback in China. Frontiers in Microbiology. 10:1936. 2019
- Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database : the journal of biological databases and curation. 2019:baz085. 2019
- Patterns of PCR Amplification Artifacts of the Fungal Barcode Marker in a Hybrid Mushroom. Frontiers in Microbiology. 10:2686. 2019
- Two new species of Verruconis from Hainan, China. MycoKeys. 48:41-53. 2019
- Deletion of the sex-determining gene SXI1α enhances the spread of mitochondrial introns in Cryptococcus neoformans. Mobile DNA. 9:24. 2018
- Eighty Years of Mycopathologia: A Retrospective Analysis of Progress Made in Understanding Human and Animal Fungal Pathogens. Mycopathologia. 183:859-877. 2018
- Hybrids and hybridization in the Cryptococcus neoformans and Cryptococcus gattii species complexes. Infection, Genetics and Evolution. 66:245-255. 2018
- Fungal mitochondrial genomes and genetic polymorphisms. Applied Microbiology and Biotechnology. 102:9433-9448. 2018
- Diversity and relationships among strains of culturable yeasts in agricultural soils in Cameroon. Scientific Reports. 8:15687. 2018
- The effects of environmental and genetic factors on the germination of basidiospores in the Cryptococcus gattii species complex. Scientific Reports. 8:15260. 2018
- Phenotypic Divergence along Geographic Gradients Reveals Potential for Rapid Adaptation of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans, in North America. Applied and Environmental Microbiology. 84:e00863-e00818. 2018
- Physiochemical Characterization of α-Amylase as Crosslinked Enzyme Aggregates. Catalysts. 8:299-299. 2018
- Strengthening the One Health Agenda: The Role of Molecular Epidemiology in Aspergillus Threat Management. Genes. 9:359-359. 2018
- The complete mitochondrial genome of the nematode-trapping fungus Dactylellina haptotyla. Mitochondrial DNA Part B: Resources. 3:964-965. 2018
- The complete mitochondrial genomes of the nematode-trapping fungus Arthrobotrys oligospora. Mitochondrial DNA Part B: Resources. 3:966-967. 2018
- Genetic Factors and Genotype-Environment Interactions Contribute to Variation in Melanin Production in the Fungal Pathogen Cryptococcus neoformans. Scientific Reports. 8:9824. 2018
- Novel microsatellite markers reveal multiple origins of Botryosphaeria dothidea causing the Chinese grapevine trunk disease. Fungal Ecology. 33:134-142. 2018
- Quantitative proteomics revealed partial fungistatic mechanism of ammonia against conidial germination of nematode-trapping fungus Arthrobotrys oligospora ATCC24927. International Journal of Biochemistry and Cell Biology. 98:104-112. 2018
- The lysine acetylome of the nematocidal bacterium Bacillus nematocida and impact of nematode on the acetylome. Journal of Proteomics. 177:31-39. 2018
- Comparative genome and transcriptome analyses reveal adaptations to opportunistic infections in woody plant degrading pathogens of Botryosphaeriaceae. DNA Research. 25:87-102. 2018
- Limited evidence of fungicide-driven triazole-resistant Aspergillus fumigatus in Hamilton, Canada. Canadian Journal of Microbiology. 64:119-130. 2018
- Multilocus Sequence Typing Reveals both Shared and Unique Genotypes of Cryptococcus neoformans in Jiangxi Province, China. Scientific Reports. 8:1495. 2018
- Classicula sinensis, a new species of basidiomycetous aquatic hyphomycetes from southwest China. MycoKeys. 40:1-12. 2018
- Exploring Genotype-Environment Interactions for Mushroom Breeding. Acta Edulis Fungi. 25:1-22. 2018
- Fungal systematics and evolution: FUSE 4. Sydowia. 70:211-286. 2018
- Three new species of soil-inhabiting Trichoderma from southwest China. MycoKeys. 44:63-80. 2018
- Widespread amphotericin B-resistant strains of <em>Aspergillus fumigatus</em> in Hamilton, Canada. Infection and Drug Resistance. Volume 11:1549-1555. 2018
- Evidence for Anti-Pseudogymnoascus destructans (Pd) Activity of Propolis. Antibiotics. 7:2-2. 2017
- The complete mitochondrial genome of the edible Basidiomycete mushroom Phlebopus Portentosus. Mitochondrial DNA Part B: Resources. 2:696-697. 2017
- Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population. Scientific Reports. 7:17304. 2017
- Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum. Applied Microbiology and Biotechnology. 101:8517-8531. 2017
-
Cryptococcosis in patients with diabetes mellitus
II in mainland China: 1993‐2015. Mycoses. 60:706-713. 2017 - Evidence of unique genetic diversity in Aspergillus fumigatus isolates from Cameroon. Mycoses. 60:739-748. 2017
- Cryptococcosis in HIV-negative Patients with Renal Dialysis: A Retrospective Analysis of Pooled Cases. Mycopathologia. 182:887-896. 2017
- The life and work of Dr. Fan Qingsheng: a pioneer in antibiotics research, agricultural microbiology, systems agriculture, and agricultural education in China. Protein and Cell. 8:551-557. 2017
- Comparison of Different Drying Methods for Recovery of Mushroom DNA. Scientific Reports. 7:3008. 2017
- Cryptococcosis in Patients with Nephrotic Syndrome: A Pooled Analysis of Cases. Mycopathologia. 182:517-525. 2017
- Frequent heteroplasmy and recombination in the mitochondrial genomes of the basidiomycete mushroom Thelephora ganbajun. Scientific Reports. 7:1626. 2017
- North American matsutake: names clarified and a new species described. Mycologia. 109:379-390. 2017
- Traceability as a Key of Seafood Safety: Reassessment and Possible Applications. Reviews in Fisheries Science and Aquaculture. 25:158-170. 2017
- Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps). Mycorrhiza. 27:261-272. 2017
- Global Population Genetic Analysis of Aspergillus fumigatus. Clinical and Vaccine Immunology. 2:e00019-e00017. 2017
- The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis. Clinical and Vaccine Immunology. 2:e00357-e00316. 2017
- Multilocus sequence analyses reveal extensive diversity and multiple origins of fluconazole resistance in Candida tropicalis from tropical China. Scientific Reports. 7:42537. 2017
- The complete mitochondrial genome of the White-Nose Syndrome pathogen, Pseudogymnoascus destructans. Mitochondrial DNA Part B: Resources. 2:48-49. 2017
- The complete mitochondrial genome of the edible Basidiomycete mushroomThelephora ganbajun. Mitochondrial DNA Part B: Resources. 2:103-105. 2017
- Tuberculosis/cryptococcosis co-infection in China between 1965 and 2016. Emerging Microbes and Infections. 6:1-7. 2017
- From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference. Genome. 59:v-ix. 2016
- Fungal DNA barcoding. Genome. 59:913-932. 2016
- One hundred noteworthy boletes from China. Fungal Diversity. 81:25-188. 2016
- Population Genetics of Hirsutella rhossiliensis, a Dominant Parasite of Cyst Nematode Juveniles on a Continental Scale. Applied and Environmental Microbiology. 82:6317-6325. 2016
- Porcini mushrooms (Boletus sect. Boletus) from China. Fungal Diversity. 81:189-212. 2016
- Population genetic structure of Colletotrichum fructicola from oil-tea and other host plants in Hainan province. Linye Kexue/Scientia Silvae Sinicae. 52:80-88. 2016
- Genetic and environmental influences on the germination of basidiospores in the Cryptococcus neoformans species complex. Scientific Reports. 6:33828. 2016
- From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference. Genome. 59:v-ix. 2016
- Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress. Scientific Reports. 6:32437. 2016
- Identification of QTLs Associated with Virulence Related Traits and Drug Resistance in Cryptococcus neoformans. G3: Genes, Genomes, Genetics. 6:2745-2759. 2016
-
Evaluation of five conventional and molecular approaches for diagnosis of cryptococcal meningitis in non‐
HIV ‐infected patients. Mycoses. 59:494-502. 2016 - Diversity and origins of Indian multi‐triazole resistant strains of Aspergillus fumigatus. Mycoses. 59:450-466. 2016
- High inbreeding, limited recombination and divergent evolutionary patterns between two sympatric morel species in China. Scientific Reports. 6:22434. 2016
- Drainage isolation and climate change-driven population expansion shape the genetic structures of Tuber indicum complex in the Hengduan Mountains region. Scientific Reports. 6:21811. 2016
- Correction: Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens. PLoS ONE. 11:e0157927-e0157927. 2016
- Cryptococcal meningitis in systemic lupus erythematosus patients: pooled analysis and systematic review. Emerging Microbes and Infections. 5:1-7. 2016
- Cryptococcosis and tuberculosis co-infection in mainland China. Emerging Microbes and Infections. 5:1-3. 2016
- Evidence for Inbreeding and Genetic Differentiation among Geographic Populations of the Saprophytic Mushroom Trogia venenata from Southwestern China. PLoS ONE. 11:e0149507-e0149507. 2016
- Genetic Analyses of the Internal Transcribed Spacer Sequences Suggest Introgression and Duplication in the Medicinal Mushroom Agaricus subrufescens. PLoS ONE. 11:e0156250-e0156250. 2016
- Insights from a biology field course at McMaster University. Theory and Practice of Contemporary Education. 8:44-47. 2016
- Population Genetic Analyses of the Fungal Pathogen Colletotrichum fructicola on Tea-Oil Trees in China. PLoS ONE. 11:e0156841-e0156841. 2016
- The complete mitochondrial genome of the Basidiomycete edible fungus Pleurotus eryngii. Mitochondrial DNA Part B: Resources. 1:772-774. 2016
- Mitochondrial inheritance in basidiomycete fungi. Fungal Biology Reviews. 29:209-219. 2015
- The roles of sexual and asexual reproduction in the origin and dissemination of strains causing fungal infectious disease outbreaks. Infection, Genetics and Evolution. 36:199-209. 2015
- Current perspectives on mitochondrial inheritance in fungi. Cell Health and Cytoskeleton. 7:143-143. 2015
- Genome Sequence of Phlebopus portentosus Strain PP33, a Cultivated Bolete. Microbiology Resource Announcements. 3:e00326-e00315. 2015
- A review on the diversity, phylogeography and population genetics ofAmanitamushrooms. Mycology. 6:86-93. 2015
- Diversity, population genetics, and evolution of macrofungi associated with animals. Mycology. 6:94-109. 2015
- Diversity, population genetics, and phylogeography of selected wild mushrooms. Mycology. 6:77-77. 2015
- Recent advances in population genetics of ectomycorrhizal mushroomsRussulaspp.. Mycology. 6:110-120. 2015
- Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris. Fungal Genetics and Biology. 77:95-107. 2015
- Mitochondrial DNA inheritance in the human fungal pathogen Cryptococcus gattii. Fungal Genetics and Biology. 75:1-10. 2015
-
Genetic differentiation and recombination among geographic populations of the fungal pathogen
C olletotrichum truncatum from chili peppers inC hina. Evolutionary Applications. 8:108-118. 2015 - Bacteria can mobilize nematode-trapping fungi to kill nematodes. Nature Communications. 5:5776. 2014
- Molecular phylogenetic analyses redefine seven major clades and reveal 22 new generic clades in the fungal family Boletaceae. Fungal Diversity. 69:93-115. 2014
-
Phylogeography and evolution of a fungal–insect association on the
T ibetanP lateau. Molecular Ecology. 23:5337-5355. 2014 - Genomics and Fungal Speciation: What Can We Expect in the Clinical Laboratory?. Current Clinical Microbiology Reports. 1:19-26. 2014
- Multilocus sequence typing of Candida africana from patients with vulvovaginal candidiasis in New Delhi, India. Mycoses. 57:544-552. 2014
- Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database : the journal of biological databases and curation. 2014:bau061-bau061. 2014
- Evidence for genetic incompatibilities associated with post-zygotic reproductive isolation in the human fungal pathogenCryptococcus neoformans. Genome. 57:335-344. 2014
- Prevalent Drug Resistance Among Oral Yeasts from Asymptomatic Patients in Hainan, China. Mycopathologia. 177:299-307. 2014
- Clinical and tree hollow populations of human pathogenic yeast in Hamilton, Ontario, Canada are different. Mycoses. 57:271-283. 2014
- Social attraction mediated by fruit flies' microbiome. Journal of Experimental Biology. 217:1346-1352. 2014
- Optimization of medium components for production of chitin deacetylase byBacillus amyloliquefaciensZ7, using response surface methodology. Biotechnology and Biotechnological Equipment. 28:242-247. 2014
- Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea. Extremophiles. 18:195-206. 2014
- Clonal Expansion of the Pseudogymnoascus destructans Genotype in North America Is Accompanied by Significant Variation in Phenotypic Expression. PLoS ONE. 9:e104684-e104684. 2014
- Patterns of Human Oral Yeast Species Distribution on Hainan Island in China. Mycopathologia. 176:359-368. 2013
- Emergence of Azole-Resistant Aspergillus fumigatus Strains due to Agricultural Azole Use Creates an Increasing Threat to Human Health. PLoS Pathogens. 9:e1003633-e1003633. 2013
- Ophiocordyceps sinensis and Cordyceps militaris: research advances, issues and perspectives. Mycosystema. 32:577-597. 2013
- Attractions of nematodes to yeasts are influenced by both nematodes and yeasts. Mycology. 4:73-81. 2013
- Mitochondrial recombination in natural populations of the button mushroom Agaricus bisporus. Fungal Genetics and Biology. 55:92-97. 2013
- The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmid-related sequences. Fungal Genetics and Biology. 55:85-91. 2013
- Correction for Morin et al., Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America. 110:4146-4146. 2013
-
Genetic diversity and recombination in natural populations of the nematode‐trapping fungus
A rthrobotrys oligospora fromC hina. Ecology and Evolution. 3:312-325. 2013 - Evidence for Mitotic Recombination within the Basidia of a Hybrid Cross of Cryptococcus neoformans. PLoS ONE. 8:e62790-e62790. 2013
- Structure, Gene Flow, and Recombination among Geographic Populations of a Russula virescens Ally from Southwestern China. PLoS ONE. 8:e73174-e73174. 2013
- Evidence against Barium in the Mushroom Trogia venenata as a Cause of Sudden Unexpected Deaths in Yunnan, China. Applied and Environmental Microbiology. 78:8834-8835. 2012
- Genome sequence of the button mushroomAgaricus bisporusreveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America. 109:17501-17506. 2012
- Mitochondrial inheritance: diverse patterns and mechanisms with an emphasis on fungi. Mycology. 3:158-166. 2012
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America. 109:6241-6246. 2012
- Professor Mu Zang, 1930–2011. Mycology. 3:87-88. 2012
- Diversity and stress-tolerance of symbiotic nitrogen-fixing bacteria from legumes in the dry-hot valleys of southwest China. African Journal of Microbiology Research. 6:1675-1684. 2012
- Ecological structuring of yeasts associated with trees around Hamilton, Ontario, Canada. FEMS Yeast Research. 12:9-19. 2012
- Orbilia blumenaviensis and its Arthrobotrys anamorph. Mycological Progress. 11:255-262. 2012
- Clonal Expansion and Emergence of Environmental Multiple-Triazole-Resistant Aspergillus fumigatus Strains Carrying the TR34/L98H Mutations in the cyp51A Gene in India. PLoS ONE. 7:e52871-e52871. 2012
- DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms. PLoS ONE. 7:e37567-e37567. 2012
- Onychomycosis: an overview with a focus on diagnosis. Experimental and Laboratory Medicine. 30:111-118. 2012
- Prevalence of specific and phylogenetically closely related genotypes in the population of Candida albicans associated with genital candidiasis in China. Fungal Genetics and Biology. 49:86-93. 2012
- Divergence and dispersal of the nematode-trapping fungus Arthrobotrys oligospora from China. Environmental Microbiology Reports. 3:763-773. 2011
- Dactylella pseudobrevistipitata, a new species from China. Annals of Microbiology. 61:591-595. 2011
- Genomic and Proteomic Analyses of the Fungus Arthrobotrys oligospora Provide Insights into Nematode-Trap Formation. PLoS Pathogens. 7:e1002179-e1002179. 2011
- Clonal Genotype of Geomyces destructans among Bats with White Nose Syndrome, New York, USA. Emerging Infectious Diseases. 17:1273-1276. 2011
- Genetic differentiation, recombination and clonal expansion in environmental populations of Cryptococcus gattii in India. Environmental Microbiology. 13:1875-1888. 2011
- In vitro antifungal susceptibility profiles and genotypes of 308 clinical and environmental isolates of Cryptococcus neoformans var. grubii and Cryptococcus gattii serotype B from north-western India. Journal of Medical Microbiology. 60:961-967. 2011
- Prevalent nosocomial clusters among causative agents for candidemia in Hamilton, Canada. Medical Mycology. 49:1-9. 2011
- Seasonal variations in the prevalence ofCryptococcus neoformansvar.grubiiandCryptococcus gattiiin decayed wood inside trunk hollows of diverse tree species in north-western India: a retrospective study. Medical Mycology. 49:320-323. 2011
- Common Reservoirs forPenicillium marneffeiInfection in Humans and Rodents, China. Emerging Infectious Diseases. 17:209-214. 2011
- Optimized Projection Matrix for Compressive Sensing. Eurasip Journal on Advances in Signal Processing. 2010. 2010
- Molecular, developmental, and evolutionary genetic studies highlight rapid evolution of genes and genetic systems. Genome. 53:848-852. 2010
- A Trojan horse mechanism of bacterial pathogenesis against nematodes. Proceedings of the National Academy of Sciences of the United States of America. 107:16631-16636. 2010
- Two new unusualLeucoagaricusspecies (Agaricaceae) from tropical China with blue-green staining reactions. Mycologia. 102:1141-1152. 2010
- Correlation between Azole Susceptibilities, Genotypes, and ERG11 Mutations in Candida albicans Isolates Associated with Vulvovaginal Candidiasis in China. Antimicrobial Agents and Chemotherapy. 54:3126-3131. 2010
- Effects of sertraline hydrochloride and fluconazole combinations onCryptococcus neoformansandCryptococcus gattii. Mycology. 1:99-105. 2010
- Genetic Diversity of Dahongjun, the Commercially Important “Big Red Mushroom” from Southern China. PLoS ONE. 5:e10684-e10684. 2010
- DNA-based geographic typing of the gourmet mushroom Tricholoma matsutake traded in China. Mycoscience. 51:248-251. 2010
- Mitochondrial inheritance in haploid × non-haploid crosses in Cryptococcus neoformans. Current Genetics. 56:163-176. 2010
- Genetic Diversity of Populations of Monilinia fructicola (Fungi, Ascomycota, Helotiales) from China. Journal of Eukaryotic Microbiology. 57:206-212. 2010
- Rhizoctonia fungi enhance the growth of the endangered orchid Cymbidium goeringii. Botany. 88:20-29. 2010
- DNA barcoding, fungal diversity, and authentication of wild gourmet mushrooms. Acta Agriculturae Universitatis Jiangxiensis. 32:1010-1017. 2010
- Torulaspora quercuumâ sp. nov. andCandida pseudohumilisâ sp. nov., novel yeasts from human and forest habitats. FEMS Yeast Research. 9:1322-1326. 2009
- Genome variation in the symbiotic nitrogen-fixing bacteriumSinorhizobium meliloti. Genome. 52:862-875. 2009
- Divergence, dispersal and recombination in Lepiota cristata from China. Fungal Diversity. 38:105-124. 2009
- Molecular Ecology of Ectomycorrhizal Fungi: Molecular Markers, Genets and Ecological Importance. Plant Diversity. 31:193-209. 2009
- Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeast Cryptococcus gattii. Molecular Ecology. 18:2628-2642. 2009
- Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans. PLoS ONE. 4:e5524-e5524. 2009
- Genetic diversity of the endemic gourmet mushroom Thelephora ganbajun from south-western China. Microbiology (United Kingdom). 154:3460-3468. 2008
- Molecular Epidemiology of Candidemia: Evidence of Clusters of Smoldering Nosocomial Infections. Clinical Infectious Diseases. 47:e17-e24. 2008
- Long-distance dispersal and recombination in environmental populations of Cryptococcus neoformans var. grubii from India. Microbiology (United Kingdom). 154:1513-1524. 2008
- Fitness distribution and transgressive segregation across 40 environments in a hybrid progeny population of the human-pathogenic yeastCryptococcus neoformans. Genome. 51:272-281. 2008
- Preserving Accuracy in GenBank. Science. 319:1616-1616. 2008
- Recombination and genetic differentiation among natural populations of the ectomycorrhizal mushroom Tricholoma matsutake from southwestern China. Molecular Ecology. 17:1238-1247. 2008
- A Traveller in Time: Phylogenetic Analysis to Identify a Disseminated Infection Acquired 30 Years Earlier. Canadian Journal of Infectious Diseases and Medical Microbiology. 19:313-315. 2008
- A traveler in time: phylogenetic analysis diagnoses the first case of reactivated sub-acute disseminated African histoplasmosis in an immunocompromised host from Tanzania.. Canadian Journal of Infectious Diseases and Medical Microbiology. 19:313-315. 2008
- The expanding host tree species spectrum ofCryptococcus gattiiandCryptococcus neoformansand their isolations from surrounding soil in India. Medical Mycology. 46:823-833. 2008
- Genetic Analyses of a Hybrid Cross Between Serotypes A and D Strains of the Human Pathogenic Fungus Cryptococcus neoformans. Genetics. 177:1475-1486. 2007
- Nematicidal Substances from Fungi. Recent Patents on Biotechnology. 1:212-233. 2007
- Abundant sequence variation around the mitochondrial origin of replication in the human opportunistic yeast pathogen Candida albicans from a tropical island in China. Fungal Genetics and Biology. 44:991-1001. 2007
- Proteases from Bacillus: a new insight into the mechanism of action for rhizobacterial suppression of nematode populations. Letters in Applied Microbiology. 45:262-269. 2007
- Oral yeast flora and its ITS sequence diversity among a large cohort of medical students in Hainan, China. Mycopathologia. 164:65-72. 2007
- Single nucleotide polymorphisms in the ectomycorrhizal mushroom Tricholoma matsutake. Microbiology (United Kingdom). 153:2002-2012. 2007
- Environment factors can influence mitochondrial inheritance in the fungus Cryptococcus neoformans. Fungal Genetics and Biology. 44:315-322. 2007
- The mating type-specific homeodomain genes SXI1α and SXI2a coordinately control uniparental mitochondrial inheritance in Cryptococcus neoformans. Current Genetics. 51:187-195. 2007
- Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti. Microbiology (United Kingdom). 152:3245-3259. 2006
- INVITED REVIEW: Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances. Molecular Ecology. 15:1713-1731. 2006
- Multiple gene genealogical analyses suggest divergence and recent clonal dispersal in the opportunistic human pathogen Candida guilliermondii. Microbiology (United Kingdom). 152:1539-1549. 2006
- Distribution ofCryptococcus gattiiandCryptococcus neoformansin decayed trunk wood ofSyzygium cuminitrees in north-western India. Medical Mycology. 44:623-630. 2006
- Evolution of microbial pathogens.. Emerging Infectious Diseases. 8:1306-1307. 2006
- Extracting Haplotypes from Diploid Organisms. Current Issues in Molecular Biology. 8:113-122. 2006
- Fundamentals of Fungal Molecular Population Genetic Analyses. Current Issues in Molecular Biology. 8:75-89. 2006
- About the recipient. Genome. 48:V-VI. 2005
- Cost of Interacting With Sexual Partners in a Facultative Sexual Microbe. Genetics. 171:1597-1604. 2005
- The inheritance of organelle genes and genomes: patterns and mechanisms. Genome. 48:951-958. 2005
- Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti. Applied and Environmental Microbiology. 71:7130-7138. 2005
- Comparative Gene Genealogies Indicate that Two Clonal Lineages ofCryptococcus gattiiin British Columbia ResembleStrains from Other Geographical Areas. Clinical and Vaccine Immunology. 4:1629-1638. 2005
- Genotype-Environment Interactions of Spontaneous Mutations for Vegetative Fitness in the Human Pathogenic Fungus Cryptococcus neoformans. Genetics. 168:1177-1188. 2004
- The prevalence and evolution of sex in microorganisms. Genome. 47:775-780. 2004
- SXI1α controls uniparental mitochondrial inheritance in Cryptococcus neoformans. Current Biology. 14:R743-R744. 2004
- Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans. Microbiology (United Kingdom). 149:2147-2154. 2003
- Candidemia in women with breast carcinoma treated with high‐dose chemotherapy and autologous bone marrow transplantation. Cancer. 98:24-30. 2003
- Isolation of Candida dubliniensis in an Aboriginal Community in Ontario, Canada. Journal of Clinical Microbiology. 41:3423-3426. 2003
- Mitochondria Are Inherited From theMATa Parent in Crosses of the Basidiomycete FungusCryptococcus neoformans. Genetics. 163:1315-1325. 2003
- Disseminated cryptococcosis in an AIDS patient caused by a canavanine-resistant strain of Cryptococcus neoformans var. grubii. Journal of Medical Microbiology. 52:271-275. 2003
- Quantitative variation of biofilms among strains in natural populations of Candida albicans. Microbiology (United Kingdom). 149:353-362. 2003
- Geographical Differences in Human Oral Yeast Flora. Clinical Infectious Diseases. 36:221-224. 2003
- Mitochondria are transmitted from MATa parent in sexual crosses of the human pathogenic fungus Cryptococcus neoformans.. Genetics. 163:1315-1325. 2003
- Estimating the Spontaneous Mutation Rate of Loss of Sex in the Human Pathogenic Fungus Cryptococcus neoformans. Genetics. 162:1157-1167. 2002
- Diversity of commensal yeasts within and among healthy hosts. Diagnostic Microbiology and Infectious Disease. 43:19-28. 2002
- Fine-scale genetic analyses reveal unexpected spatial-temporal heterogeneity in two natural populations of the commercial mushroom Agaricus bisporus. Microbiology (United Kingdom). 148:1253-1262. 2002
- Mitochondrial DNA polymorphisms in the human pathogenic fungus Cryptococcus neoformans. Current Genetics. 41:43-47. 2002
- Geographic Distribution of Mating Type Alleles of Cryptococcus neoformans in Four Areas of the United States. Journal of Clinical Microbiology. 40:965-972. 2002
- Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology (United Kingdom). 148:203-212. 2002
- Dynamic and Heterogeneous Mutations to Fluconazole Resistance in Cryptococcus neoformans. Antimicrobial Agents and Chemotherapy. 45:420-427. 2001
- Development and Characterization of a Genetic Linkage Map of Cryptococcus neoformans var. neoformans Using Amplified Fragment Length Polymorphisms and Other Markers. Fungal Genetics and Biology. 31:189-203. 2000
- Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Molecular Ecology. 9:1471-1481. 2000
- Uniparental Mitochondrial Transmission in Sexual Crosses in Cryptococcus neoformans. Current Microbiology. 40:269-273. 2000
- Clonal and Spontaneous Origins of Fluconazole Resistance in Candida albicans. Journal of Clinical Microbiology. 38:1214-1220. 2000
- Molecular typing of pathogenic fungi. Medical Mycology. 38:189-197. 2000
- Population and phylogenetic structure within the Agaricus subfloccosus complex. Fungal Biology. 103:1515-1523. 1999
- Species and Genotypic Diversities and Similarities of Pathogenic Yeasts Colonizing Women. Journal of Clinical Microbiology. 37:3835-3843. 1999
- Lack of Genetic Differentiation between Two Geographically Diverse Samples of Candida albicans Isolated from Patients Infected with Human Immunodeficiency Virus. Journal of Bacteriology. 181:1369-1373. 1999
- PCR–restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candidaalbicans. Molecular Ecology. 8:59-73. 1999
- Colony Size Can Be Used To Determine the MIC of Fluconazole for Pathogenic Yeasts. Journal of Clinical Microbiology. 36:2383-2385. 1998
- Mitochondrial DNA variation in natural populations of the mushroom Agaricus bisporus. Molecular Ecology. 7:19-33. 1998
- Genetic Structure of Natural Populations of Agaricus bisporus, the Commercial Button Mushroom. Journal of Heredity. 88:482-488. 1997
- Somatic recombination in the cultivated mushroom Agaricus bisporus. Fungal Biology. 100:188-192. 1996
- Analysis of inbreeding depression in Agaricus bisporus.. Genetics. 141:137-145. 1995
- An efficient protocol for isolating DNA from higher fungi. Trends in Genetics. 10:226-227. 1994
- C-banding and fluorescence in situ hybridization studies of the wheat–alien hybrid 'Agrotana'. Genome. 37:477-481. 1994
- Localization of the Mating Type Gene in Agaricus bisporus. Applied and Environmental Microbiology. 59:3044-3049. 1993
- Media and temperature effects on mating interactions of Agaricus bisporus. Cultivated Mushroom Research (CMR) Newsletter (United Kingdom). 1:25-32. 1993
- Correction: DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms. PLoS ONE. 7:10.1371/annotation/e918501c-a3a9-4c14-9ea6-bcc6cf53062e.
- Correction: Emergence of Azole-Resistant Aspergillus fumigatus Strains due to Agricultural Azole Use Creates an Increasing Threat to Human Health. PLoS Pathogens. 9:10.1371/annotation/4ffcf1da-b180-4149-834c-9c723c5dbf9b.
- Isolation of Culturable Yeasts and Molds from Soils to Investigate Fungal Population Structure. Journal of Visualized Experiments.
- Pan-genome and whole-genome resequencing reveals genetic diversity and stress responses of Cenococcum geophilum
- Strong Metal‐Support Interaction‐Induced Regulation of Hydrogen Adsorption Behavior of Uniform Ru Nanoparticles Integrated with CoP Nanosheets for High‐Efficiency Electrochemical Hydrogen Production. Advanced Sustainable Systems.
- Variation in mating interactions in Agaricus bisporus. The Cultivated Mushroom Research Newsletter. 3:23-30.
- When Do We Call Genetically Distinct Strains Different Species? - A Cautionary Case Study of the Colletotrichum gloesporioides Species Complex. Fungal Genomics and Biology. 06.
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preprints
- The rapid diversification of Boletales is linked to Early Eocene and Mid-Miocene Climatic Optima 2023
- Mitogenome Variations in a Global Population of Aspergillus fumigatus 2023
- Whole-genome Sequencing Reveals Putative Underlying Mechanisms of Biocontrol Capability of IBFCBF-5 2021
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