Genomics Concept

subject area of

• A Genomic Score Prognostic of Outcome in Trauma Patients  Academic Article
• A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals  Academic Article
• A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease  Academic Article
• A comprehensive genomic history of extinct and living elephants  Academic Article
• A machine learning approach to radiogenomics of breast cancer: a study of 922 subjects and 529 DCE-MRI features  Academic Article
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Academic Article
• A phylogenomic framework and timescale for comparative studies of tunicates  Academic Article
• A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach  Academic Article
• A robust platform for chemical genomics in bacterial systems  Academic Article
• A shotgun lipidomics approach in Sinorhizobium meliloti as a tool in functional genomics  Academic Article
• A target based approach identifies genomic predictors of breast cancer patient response to chemotherapy  Academic Article
• ANISEED 2015: a digital framework for the comparative developmental biology of ascidians  Academic Article
• Additional molecular support for the new chordate phylogeny  Academic Article
• Advances in Genomic Analysis of Stroke  Academic Article
• Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analyses  Academic Article
• An Integrated Approach to Functional Genomics: Construction of a Novel Reporter Gene Fusion Library for Sinorhizobium meliloti  Academic Article
• Analysis of the genomic landscapes of Barbadian and Nigerian women with triple negative breast cancer  Academic Article
• Ancient Whole Genome Enrichment Using Baits Built from Modern DNA  Academic Article
• Ancient human genomics: the methodology behind reconstructing evolutionary pathways  Academic Article
• AnnoTree: visualization and exploration of a functionally annotated microbial tree of life  Academic Article
• Antimicrobial resistance surveillance in the genomic age  Academic Article
• Assessment of Immune Checkpoint Inhibitors and Genomic Alterations by Body Mass Index in Advanced Renal Cell Carcinoma  Academic Article
• Bacteriophage ZCSE2 is a Potent Antimicrobial against Salmonella enterica Serovars: Ultrastructure, Genomics and Efficacy  Academic Article
• Canadian Open Genetics Repository (COGR): a unified clinical genomics database as a community resource for standardising and sharing genetic interpretations  Academic Article
• Cancer phenomics: RET and PTEN as illustrative models  Academic Article
• Causes and Consequences of Genetic Background Effects Illuminated by Integrative Genomic Analysis  Academic Article
• Challenges and practical solutions for managing secondary genomic findings in primary care  Academic Article
• Challenges of Conducting Value Assessment for Comprehensive Genomic Profiling  Academic Article
• Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil  Academic Article
• Characterization of metastatic urothelial carcinoma via comprehensive genomic profiling of circulating tumor DNA  Academic Article
• Chemical Genomic Approaches to Study Model Microbes  Academic Article
• Chemical genomics in Escherichia coli identifies an inhibitor of bacterial lipoprotein targeting  Academic Article
• Chemical genomics reveals mechanistic hypotheses for uncharacterized bioactive molecules in bacteria  Academic Article
• Chemical genomics reveals targetable programs of human cancers rooted in pluripotency  Academic Article
• Chitinase genes (CHIAs) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals  Academic Article
• Clinical and Genomic Risk in Adjuvant Therapy for Breast Cancer  Academic Article
• Clinical and Genomic Risk in Adjuvant Therapy for Breast Cancer.  Academic Article
• Clinical and Genomic Risk in Adjuvant Therapy for Breast Cancer. Reply.  Academic Article
• Cohort profile: genomic data for 26 622 individuals from the Canadian Longitudinal Study on Aging (CLSA)  Academic Article
• Comparative Genomics of Canadian Epidemic Lineages of Methicillin-Resistant Staphylococcus aureus  Academic Article
• Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness  Academic Article
• Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants  Academic Article
• Comparing the performance of linear and nonlinear principal components in the context of high-dimensional genomic data integration  Academic Article
• Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths  Academic Article
• Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools  Academic Article
• DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products  Academic Article
• Demystifying phenotypes: The comparative genomics of evo-devo  Academic Article
• Detection of Large Genomic RNA via DNAzyme‐Mediated RNA Cleavage and Rolling Circle Amplification: SARS‐CoV‐2 as a Model  Academic Article
• Determining the mode of action of bioactive compounds  Academic Article
• Direct-to-consumer genetic testing: letting the genie out of the bottle?  Academic Article
• Discovery of novel bacterial toxins by genomics and computational biology  Academic Article
• Ecological Genomics of Marine Roseobacters  Academic Article
• Enabling the genomic revolution in Africa  Academic Article
• Enlightening human B‐cell diversity  Academic Article
• Evidence of causal effect of major depression on alcohol dependence: findings from the psychiatric genomics consortium  Academic Article
• Evidence synthesis and guideline development in genomic medicine: current status and future prospects  Academic Article
• Evolution of Proteasome Regulators in Eukaryotes  Academic Article
• Evolution of genes and genomes on the Drosophila phylogeny  Academic Article
• Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction  Academic Article
• Expanding the soil antibiotic resistome: exploring environmental diversity  Academic Article
• FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE  Academic Article
• Falling prices and unfair competition in consumer genomics  Academic Article
• Filtering Genes for Cluster and Network Analysis  Academic Article
• From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference  Academic Article
• Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome  Academic Article
• Functional genomic landscape of cancer-intrinsic evasion of killing by T cells  Academic Article
• Fungal species concepts in the genomics era  Academic Article
• Genetic Susceptibility to West Nile Virus and Dengue  Academic Article
• Genetic determinants of warfarin maintenance dose and time in therapeutic treatment range: a RE-LY genomics substudy  Academic Article
• Gene‐targeted therapies: Towards equitable development, diagnosis, and access  Academic Article
• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria  Academic Article
• Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A  Academic Article
• Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes  Academic Article
• Genome sequence of the Brown Norway rat yields insights into mammalian evolution  Academic Article
• Genome-Scale Phylogeny and the Detection of Systematic Biases  Academic Article
• Genome-wide detection of tandem DNA repeats that are expanded in autism  Academic Article
• Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses  Academic Article
• Genome-wide lentiviral shRNA screen identifies serine/arginine-rich splicing factor 2 as a determinant of oncolytic virus activity in breast cancer cells  Academic Article
• Genomes of the Symbiotic Nitrogen-Fixing Bacteria of Legumes  Academic Article
• Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)  Academic Article
• Genomes within genomes: nested symbiosis and its implications for plant evolution  Academic Article
• Genomic Analyses Identify Novel Molecular Signatures Specific for the Caenorhabditis and other Nematode Taxa Providing Novel Means for Genetic and Biochemical Studies  Academic Article
• Genomic Analyses of a Fungemia Outbreak Caused by Lodderomyces elongisporus in a Neonatal Intensive Care Unit in Delhi, India  Academic Article
• Genomic Classifier Performance in Intermediate-Risk Prostate Cancer: Results From NRG Oncology/RTOG 0126 Randomized Phase 3 Trial  Academic Article
• Genomic Consequences of Background Effects onscallopedMutant Expressivity in the Wing ofDrosophila melanogaster  Academic Article
• Genomic Loss and Epigenetic Silencing of the FOSL1 Tumor Suppressor Gene in Radiation-induced Neoplastic Transformation of Human CGL1 Cells Alters the Tumorigenic Phenotype In Vitro and In Vivo  Academic Article
• Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia  Academic Article
• Genomic and Clinical Correlates of Adrenocortical Carcinoma in an Adult Patient with Li-Fraumeni Syndrome: A Case Report  Academic Article
• Genomic approaches to bleeding disorders  Conference Paper
• Genomic architecture of autism from comprehensive whole-genome sequence annotation  Academic Article
• Genomic atlas of the plasma metabolome prioritizes metabolites implicated in human diseases  Academic Article
• Genomic basis of delayed reward discounting  Academic Article
• Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining  Academic Article
• Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection  Academic Article
• Genomic inversions in Escherichia coli alter gene expression and are associated with nucleoid protein binding sites  Academic Article
• Genomic resources for identification of the minimal N₂-fixing symbiotic genome  Academic Article
• Genomic responses in mouse models poorly mimic human inflammatory diseases  Academic Article
• Genomics and epigenomics in pediatric oncology and clinical laboratory genetics  Academic Article
• Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria  Academic Article
• Genotypic and Phenotypic Analyses of Two “Isogenic” Strains of the Human Fungal Pathogen Cryptococcus neoformans var. neoformans  Academic Article
• Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis  Academic Article
• Glycopeptide antibiotic discovery in the genomic era  Chapter
• Heterologous expression-facilitated natural products’ discovery in actinomycetes  Academic Article
• Heterotachy and long-branch attraction in phylogenetics  Academic Article
• Hierarchical convolutional neural networks for segmentation of breast tumors in MRI with application to radiogenomics  Academic Article
• Identification of a Novel Hepatitis C Virus Genotype From Punjab, India: Expanding Classification of Hepatitis C Virus Into 8 Genotypes  Academic Article
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Academic Article
• IgA and IgG antineutrophil cytoplasmic antibody engagement of Fc receptor genetic variants influences granulomatosis with polyangiitis  Academic Article
• Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification  Academic Article
• Important research questions in allergy and related diseases: nonallergic rhinitis: a GA2LEN paper  Academic Article
• Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies  Academic Article
• Infectious salmon anaemia virus (ISAV) isolates induce distinct gene expression responses in the Atlantic salmon (Salmo salar) macrophage/dendritic-like cell line TO, assessed using genomic techniques  Academic Article
• Integrated genomic characterization of oesophageal carcinoma  Academic Article
• Interferon-Mediated Immunopathological Events Are Associated with Atypical Innate and Adaptive Immune Responses in Patients with Severe Acute Respiratory Syndrome  Academic Article
• Intertumoral Heterogeneity within Medulloblastoma Subgroups  Academic Article
• Invited Commentary: Consolidating Data Harmonization--How to Obtain Quality and Applicability?  Academic Article
• IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.  Academic Article
• Les datations moléculaires à l’heure de la génomique  Academic Article
• Lessons of the month: A breathless severe asthmatic in the genomic era: Occam's razor or Hickam's dictum?  Academic Article
• Limited genomic consequences of hybridization between two African clawed frogs, Xenopus gilli and X. laevis (Anura: Pipidae)  Academic Article
• Low copy number of the salivary amylase gene predisposes to obesity  Academic Article
• Male Sex Drive and the Maintenance of Sex: Evidence from Drosophila  Academic Article
• Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA  Academic Article
• Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances  Academic Article
• Microbial systematics in the post-genomics era  Academic Article
• Mitochondria and Cancer: Past, Present, and Future  Academic Article
• Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities  Academic Article
• Mitonuclear interactions and introgression genomics of macaque monkeys ( Macaca ) highlight the influence of behaviour on genome evolution  Academic Article
• Molecular Genetic Analysis of the Idd4 Locus Implicates the IFN Response in Type 1 Diabetes Susceptibility in Nonobese Diabetic Mice  Academic Article
• Molecular classification of idiopathic pulmonary fibrosis: Personalized medicine, genetics and biomarkers  Academic Article
• Molecular subgroups of atypical teratoid rhabdoid tumours in children: an integrated genomic and clinicopathological analysis  Academic Article
• Much ado about omics: welcome to ‘the permutome’  Academic Article
• Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons  Academic Article
• New Advances in Separation Science for Metabolomics: Resolving Chemical Diversity in a Post-Genomic Era  Academic Article
• New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog X. borealis  Academic Article
• Novel approaches to discovery of antibacterial agents  Academic Article
• Omics Underpins Novel Clues on VDR Chemoprevention Target in Breast Cancer  Academic Article
• Open-Source High-Throughput Phenomics of Bacterial Promoter-Reporter Strains  Academic Article
• Opportunities for natural products in 21^st century antibiotic discovery  Academic Article
• Origin and evolution of gene families in Bacteria and Archaea  Academic Article
• Origins and evolution of biological novelty  Academic Article
• OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals  Academic Article
• Overexpression of MUC1 and Genomic Alterations in Its Network Associate with Prostate Cancer Progression  Academic Article
• Pan-urologic cancer genomic subtypes that transcend tissue of origin  Academic Article
• Phenomics: expanding the role of clinical evaluation in genomic studies.  Academic Article
• Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont  Academic Article
• Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation  Academic Article
• Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera  Academic Article
• Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov.  Academic Article
• Phylogenomics and comparative genomic studies delineate six main clades within the family Enterobacteriaceae and support the reclassification of several polyphyletic members of the family  Academic Article
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Academic Article
• Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria  Academic Article
• Phylogenomics and the reconstruction of the tree of life  Academic Article
• Phylogenomics: the beginning of incongruence?  Academic Article
• Physiological and genomic evidence that selection on the transcription factor Epas1 has altered cardiovascular function in high-altitude deer mice  Academic Article
• Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa  Academic Article
• Precision oncology using ex vivo technology: a step towards individualised cancer care?  Academic Article
• Predicting novel disease mutations in the cardiac sodium channel  Academic Article
• Primary care providers' experiences with and perceptions of personalized genomic medicine.  Academic Article
• Putting the Genome in Context: Gene-Environment Interactions in Type 2 Diabetes  Academic Article
• Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties  Academic Article
• Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis  Academic Article
• Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice  Academic Article
• Reply to Just the facts, please  Academic Article
• Response to Brinkmann et al. “Re-assembly of 19th century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the United States”  Academic Article
• Return of Genomic Results to Research Participants: The Floor, the Ceiling, and the Choices In Between  Academic Article
• Return of Results Policies for Genomic Research: Current Practices and the Hearts in Rhythm Organization (HiRO) Approach  Academic Article
• Return of genetic and genomic research findings: experience of a pediatric biorepository  Academic Article
• Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species  Academic Article
• Robust demarcation of fourteen different species groups within the genus Streptococcus based on genome-based phylogenies and molecular signatures  Academic Article
• SAGE: String-overlap Assembly of GEnomes  Academic Article
• SHRiMP2: Sensitive yet Practical Short Read Mapping  Academic Article
• SNP Panel and Genomic Sex Identification in Atlantic Halibut (Hippoglossus hippoglossus)  Academic Article
• Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria  Academic Article
• Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans  Academic Article
• Single-Species Microarrays and Comparative Transcriptomics  Academic Article
• Small non-coding RNAs in Streptomyces coelicolor  Academic Article
• Sparse Canonical Correlation Analysis with Application to Genomic Data Integration  Academic Article
• Special Series on Comparative Effectiveness Research: Challenges to Real-World Solutions to Quality Improvement in Personalized Medicine  Academic Article
• Strategic Targeting of Essential Host-pathogen Interactions in Chlamydial Disease  Academic Article
• Strategies for target identification of antimicrobial natural products  Academic Article
• Subgroup-specific structural variation across 1,000 medulloblastoma genomes  Academic Article
• Systems-Level Chemical Biology to Accelerate Antibiotic Drug Discovery  Academic Article
• Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease  Academic Article
• Targeted genomic landscape of metastases compared to primary tumours in clear cell metastatic renal cell carcinoma  Academic Article
• Targeted metabolite and transcript profiling for elucidating enzyme function: isolation of novelN-methyltransferases from three benzylisoquinoline alkaloid-producing species  Academic Article
• The Caribou (Rangifer tarandus) Genome  Academic Article
• The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information  Academic Article
• The Divided Bacterial Genome: Structure, Function, and Evolution  Academic Article
• The Integrated Genomic Landscape of Thymic Epithelial Tumors  Academic Article
• The Location of Substitutions and Bacterial Genome Arrangements  Academic Article
• The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum-sensing signal molecule  Academic Article
• The Recovery, Interpretation and Use of Ancient Pathogen Genomes  Academic Article
• The future of molecular approaches to inflammatory bowel disease.  Academic Article
• The genomics of heart failure: design and rationale of the HERMES consortium  Academic Article
• The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems  Academic Article
• The post-genomic era: workshop on chromatin immunoprecipitation-related techniques  Academic Article
• The role of clinical response to treatment in determining pathogenicity of genomic variants  Academic Article
• Thermal Injury Activates the eEF2K-Dependent eEF2 Pathway in Pediatric Patients  Academic Article
• Transfusion Medicine in the Era of Genomics and Proteomics  Academic Article
• Truncating Mutations in UBAP1 Cause Hereditary Spastic Paraplegia  Academic Article
• Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny  Academic Article
• Unsupervised statistical clustering of environmental shotgun sequences  Academic Article
• Use of genetic and chemical synthetic lethality as probes of complexity in bacterial cell systems  Academic Article
• Widening the lens of actionability: A qualitative study of primary care providers’ views and experiences of managing secondary genomic findings  Academic Article
• Xenopus fraseri: Mr. Fraser, where did your frog come from?  Academic Article
• Yale Center for Clinical Investigation: Leveraging Industry Partnerships and Research Cores  Academic Article