Journal article
The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information
Abstract
Pathogen genomics is a critical tool for public health surveillance, infection control, outbreak investigations as well as research. In order to make use of pathogen genomics data, they must be interpreted using contextual data (metadata). Contextual data include sample metadata, laboratory methods, patient demographics, clinical outcomes and epidemiological information. However, the variability in how contextual information is captured by …
Authors
Gill IS; Griffiths EJ; Dooley D; Cameron R; Kallesøe SS; John NS; Sehar A; Gosal G; Alexander D; Chapel M
Journal
Microbial Genomics, Vol. 9, No. 1,
Publisher
Microbiology Society
Publication Date
January 23, 2023
DOI
10.1099/mgen.0.000908
ISSN
2057-5858