Gene Expression Regulation, Bacterial Concept

subject area of

• (p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium  Journal Articles
• Molecular characterization of the Pseudomonas aeruginosa serotype O5 (PAO1) B‐band lipopolysaccharide gene cluster  Journal Articles
• Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD  Journal Articles
• N‐acetyllactosamine‐induced retraction of bundle‐forming pili regulates virulence‐associated gene expression in enteropathogenic Escherichia coli  Journal Articles
• Pseudomonas aeruginosaB-band lipopolysaccharide geneswbpAandwbpIand theirEscherichia colihomologueswecCandwecBare not functionally interchangeable  Journal Articles
• SalmonellaProduces an O-Antigen Capsule Regulated by AgfD and Important for Environmental Persistence  Journal Articles
• Sinorhizobium meliloti phospholipase C required for lipid remodeling during phosphorus limitation  Journal Articles
• ampCgene expression in promoter mutants of cefoxitin-resistantEscherichia coliclinical isolates  Journal Articles
• pfs-Dependent Regulation of Autoinducer 2 Production inSalmonella entericaSerovar Typhimurium  Journal Articles
• PhoR autokinase activity is controlled by an intermediate in wall teichoic acid metabolism that is sensed by the intracellular PAS domain during the PhoPR‐mediated phosphate limitation response of Bacillus subtilis  Journal Articles
• l-Hydroxyproline andd-Proline Catabolism in Sinorhizobium meliloti  Journal Articles
• A Cryptic Polyene Biosynthetic Gene Cluster in Streptomyces calvus Is Expressed upon Complementation with a Functional bldA Gene  Journal Articles
• A Sinorhizobium meliloti minE mutant has an altered morphology and exhibits defects in legume symbiosis  Journal Articles
• A novel function for the competence inducing peptide, XIP, as a cell death effector ofStreptococcus mutans  Journal Articles
• A novel inhibitor of Chlamydophila pneumoniae protein kinase D (PknD) inhibits phosphorylation of CdsD and suppresses bacterial replication  Journal Articles
• Aerial development in Streptomyces coelicolor requires sortase activity  Journal Articles
• Alkaloids Modulate Motility, Biofilm Formation and Antibiotic Susceptibility of Uropathogenic Escherichia coli  Journal Articles
• An ABC-Type Cobalt Transport System Is Essential for Growth of Sinorhizobium melilotiat Trace Metal Concentrations  Journal Articles
• An Effective Method for Quantifying RNA Expression of IbsC‐SibC, a Type I Toxin‐Antitoxin System in Escherichia coli  Journal Articles
• Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli  Journal Articles
• Binding Site Determinants for the LysR-Type Transcriptional Regulator PcaQ in the Legume Endosymbiont Sinorhizobium meliloti  Journal Articles
• BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2)  Journal Articles
• Bringing order to a complex molecular machine: The assembly of the bacterial flagella  Journal Articles
• Broad Spectrum Aminoglycoside Phosphotransferase Type III from Enterococcus: Overexpression, Purification, and Substrate Specificity  Journal Articles
• Cell Wall Hydrolases Affect Germination, Vegetative Growth, and Sporulation in Streptomyces coelicolor  Journal Articles
• Characterization and genomic analysis of a diesel-degrading bacterium, Acinetobacter calcoaceticus CA16, isolated from Canadian soil  Journal Articles
• Characterization of an inducible vancomycin resistance system in Streptomyces coelicolor reveals a novel gene (vanK) required for drug resistance  Journal Articles
• Characterization of rcsB and rcsC from Escherichia coli O9:K30:H12 and examination of the role of the rcs regulatory system in expression of group I capsular polysaccharides  Journal Articles
• Characterization of the Bacillus subtilis GTPase YloQ and its role in ribosome function  Journal Articles
• Characterization of the Depletion of 2- C -Methyl- d -Erythritol-2,4-Cyclodiphosphate Synthase in Escherichia coli and Bacillus subtilis  Journal Articles
• Characterization of the β-Ketoadipate Pathway inSinorhizobium meliloti  Journal Articles
• Clades of huge phages from across Earth’s ecosystems  Journal Articles
• Cloning and Characterization of ectABC Cluster from Bacillus alcalophilus DTY1  Journal Articles
• Communication in bacteria: an ecological and evolutionary perspective  Journal Articles
• Comparative Genetics of the rdar Morphotype inSalmonella  Journal Articles
• Comparative transcriptome analysis ofAgrobacterium tumefaciensin response to plant signal salicylic acid, indole-3-acetic acid and γ-amino butyric acid reveals signalling cross-talk andAgrobacterium-plant co-evolution  Journal Articles
• Complex Intra-Operonic Dynamics Mediated by a Small RNA in Streptomyces coelicolor  Journal Articles
• Comprehensive Analysis of Gene-Environmental Interactions with Temporal Gene Expression Profiles in Pseudomonas aeruginosa  Journal Articles
• Contributions of Speed and Accuracy to Translational Selection in Bacteria  Journal Articles
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Journal Articles
• Controlled induction of the RpoS regulon inEscherichia coli, using an RpoS-expressing plasmid  Journal Articles
• Coordinated Regulation of Two Independent Cell-Cell Signaling Systems and Swarmer Differentiation inSalmonella entericaSerovar Typhimurium  Journal Articles
• Crp Is a Global Regulator of Antibiotic Production in Streptomyces  Journal Articles
• Cyclic AMP-Independent Control of Twitching Motility in Pseudomonas aeruginosa  Journal Articles
• Cysteine biosynthesis, oxidative stress and antibiotic resistance in Salmonella typhimurium  Journal Articles
• DNA packaging bias and differential expression of gene transfer agent genes within a population during production and release of the Rhodobacter capsulatus gene transfer agent, RcGTA  Journal Articles
• Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor  Journal Articles
• Discovery of novel bacterial toxins by genomics and computational biology  Journal Articles
• Dual Effects of MLS Antibiotics  Journal Articles
• Dual role of a (p)ppGpp‐ and (p)ppApp‐degrading enzyme in biofilm formation and interbacterial antagonism  Journal Articles
• Dysregulated Macrophage-Inflammatory Protein-2 Expression Drives Illness in Bacterial Superinfection of Influenza  Journal Articles
• Effects of AttM lactonase on the pathogenicity ofStreptomyces scabies  Journal Articles
• Effects of mesalamine (5-aminosalicylic acid) on bacterial gene expression  Journal Articles
• Elimination of carbon catabolite repression in Clostridium acetobutylicum—a journey toward simultaneous use of xylose and glucose  Journal Articles
• Elucidating the Function of the RpoS Regulon  Journal Articles
• Emerging and divergent roles of pyrophosphorylated nucleotides in bacterial physiology and pathogenesis  Journal Articles
• Environmental Regulation of Pseudomonas aeruginosa PAO1 Las and Rhl Quorum-Sensing Systems  Journal Articles
• Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression  Journal Articles
• Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation  Journal Articles
• Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome  Journal Articles
• Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria  Journal Articles
• Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage  Journal Articles
• Exploratory Growth in Streptomyces venezuelae Involves a Unique Transcriptional Program, Enhanced Oxidative Stress Response, and Profound Acceleration in Response to Glycerol  Journal Articles
• Expression and Secretion Hierarchy in the Nonflagellar Type III Secretion System  Journal Articles
• Expression of the Escherichia coli NRZ nitrate reductase is highly growth phase dependent and is controlled by RpoS, the alternative vegetative sigma factor  Journal Articles
• Expression screening of bacterial libraries of recombinant alpha-1 proteinase inhibitor variants for candidates with thrombin inhibitory capacity  Journal Articles
• Functional and Evolutionary Characterization of a Gene Transfer Agent’s Multilocus “Genome”  Journal Articles
• Functional relatedness in the Inv/Mxi‐Spa type III secretion system family  Journal Articles
• Galactitol catabolism in Sinorhizobium meliloti is dependent on a chromosomally encoded sorbitol dehydrogenase and a pSymB-encoded operon necessary for tagatose catabolism  Journal Articles
• Gene Dispensability in Escherichia coli Grown in Thirty Different Carbon Environments  Journal Articles
• Gene amelioration demonstrated: the journey of nascent genes in bacteria  Journal Articles
• Genetic Analysis of Mutations Affecting pckA Regulation in Rhizobium (Sinorhizobium) meliloti  Journal Articles
• Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the Escherichia coli GTPase YjeQ in Late Ribosome Biogenesis  Journal Articles
• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria  Journal Articles
• Genomic Instability in Regions Adjacent to a Highly ConservedpchProphage inEscherichia coliO157:H7 Generates Diversity in Expression Patterns of the LEE Pathogenicity Island  Journal Articles
• Genomic Profiling of Iron-Responsive Genes in Salmonella enterica Serovar Typhimurium by High-Throughput Screening of a Random Promoter Library  Journal Articles
• Genomic insights into the evolution and ecology of botulinum neurotoxins  Journal Articles
• Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori  Journal Articles
• Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933  Journal Articles
• Glycopeptide Sulfation Evades Resistance  Journal Articles
• Hidden antibiotics in actinomycetes can be identified by inactivation of gene clusters for common antibiotics  Journal Articles
• Hybrid sensor kinase PA1611 in Pseudomonas aeruginosa regulates transitions between acute and chronic infection through direct interaction with RetS  Journal Articles
• Identification and characterization of hydrogen peroxide-sensitive mutants of Escherichia coli: genes that require OxyR for expression  Journal Articles
• Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli  Journal Articles
• Identification of a Hydroxyproline Transport System in the Legume Endosymbiont Sinorhizobium meliloti  Journal Articles
• Identification of a megaplasmid centromere reveals genetic structural diversity within the repABC family of basic replicons  Journal Articles
• Identification of mutants with altered phenazine production in Pseudomonas aeruginosa  Journal Articles
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Journal Articles
• Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance  Journal Articles
• Impacts of peroxisome proliferator-activated receptor-γ activation on cigarette smoke-induced exacerbated response to bacteria  Journal Articles
• Importance of the RpoE Regulon in Maintaining the Lipid Bilayer during Antimicrobial Treatment with the Polycationic Agent, Chlorhexidine  Journal Articles
• Induction of Escherichia coli hydroperoxidase I by acetate and other weak acids  Journal Articles
• Inter-replicon Gene Flow Contributes to Transcriptional Integration in the Sinorhizobium meliloti Multipartite Genome  Journal Articles
• Interplay between Nucleoid-Associated Proteins and Transcription Factors in Controlling Specialized Metabolism in Streptomyces  Journal Articles
• Just-in-time transcription program in metabolic pathways  Journal Articles
• Mapping and Regulation of Genes within Salmonella Pathogenicity Island 12 That Contribute to In Vivo Fitness of Salmonella enterica Serovar Typhimurium  Journal Articles
• Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome  Journal Articles
• Metabolic differentiation in actively swarming Salmonella  Journal Articles
• Metabolic suppression identifies new antibacterial inhibitors under nutrient limitation  Journal Articles
• Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12  Journal Articles
• Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication  Journal Articles
• Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones  Journal Articles
• Modulation of secreted virulence factor genes by subinhibitory concentrations of antibiotics in Pseudomonas aeruginosa  Journal Articles
• Molecular and expression analysis of the Rhizobium meliloti phosphoenolpyruvate carboxykinase (pckA) gene  Journal Articles
• Molecular basis for CesT recognition of type III secretion effectors in enteropathogenic Escherichia coli  Journal Articles
• Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence  Journal Articles
• Multiple histidines in the periplasmic domain of the Salmonella enterica sensor kinase SsrA enhance signaling in response to extracellular acidification  Journal Articles
• NADP+ -dependent malic enzyme of Rhizobium meliloti  Journal Articles
• Negative regulation of Salmonella pathogenicity island 2 is required for contextual control of virulence during typhoid  Journal Articles
• Negative regulation of sigma 54-dependent dctA expression by the transcriptional activator DctD  Journal Articles
• New Kid on the Block: LmbU Expands the Repertoire of Specialized Metabolic Regulators in Streptomyces  Journal Articles
• Novel Repressor of Escherichia coli O157:H7 Motility Encoded in the Putative Fimbrial Cluster OI-1  Journal Articles
• Novel Role for PilNO in Type IV Pilus Retraction Revealed by Alignment Subcomplex Mutations  Journal Articles
• Nucleotide Second Messenger‐Mediated Regulation of a Muralytic Enzyme in Streptomyces  Journal Articles
• Oligomeric lipoprotein PelC guides Pel polysaccharide export across the outer membrane of Pseudomonas aeruginosa  Journal Articles
• On the Road to Bacterial Cell Death  Journal Articles
• Open-Source High-Throughput Phenomics of Bacterial Promoter-Reporter Strains  Journal Articles
• Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria  Journal Articles
• Overexpression of the dctA gene in Rhizobium meliloti: effect on transport of C₄ dicarboxylates and symbiotic nitrogen fixation  Conferences
• Pathogenic adaptation of intracellular bacteria by rewiring a cis -regulatory input function  Journal Articles
• Pel Polysaccharide Biosynthesis Requires an Inner Membrane Complex Comprised of PelD, PelE, PelF, and PelG  Journal Articles
• PelA and PelB proteins form a modification and secretion complex essential for Pel polysaccharide-dependent biofilm formation in Pseudomonas aeruginosa  Journal Articles
• Persistence of Salmonella on Egg Conveyor Belts Is Dependent on the Belt Type but Not on the rdar Morphotype  Journal Articles
• PhoPQ regulates acidic glycerophospholipid content of the Salmonella Typhimurium outer membrane  Journal Articles
• PhoU Allows Rapid Adaptation to High Phosphate Concentrations by Modulating PstSCAB Transport Rate in Sinorhizobium meliloti  Journal Articles
• Phosphate limitation induces catalase expression inSinorhizobium meliloti,Pseudomonas aeruginosaandAgrobacterium tumefaciens  Journal Articles
• Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives  Journal Articles
• Polymorphism and selection of rpoS in pathogenic Escherichia coli  Journal Articles
• Potentiation of Aminoglycoside Activity in Pseudomonas aeruginosa by Targeting the AmgRS Envelope Stress-Responsive Two-Component System  Journal Articles
• Predation in Homogeneous and Heterogeneous Phage Environments Affects Virulence Determinants of Pseudomonas aeruginosa  Journal Articles
• Programming gene expression with combinatorial promoters  Journal Articles
• Promoter prediction in the rhizobia  Journal Articles
• Properties of NAD+- and NADP+-dependent malic enzymes of Rhizobium (Sinorhizobium) meliloti and differential expression of their genes in nitrogen-fixing bacteroids  Journal Articles
• Proteomic Analysis of a NAP1 Clostridium difficile Clinical Isolate Resistant to Metronidazole  Journal Articles
• Quorum Quenching in Agrobacterium tumefaciens : Chance or Necessity?  Journal Articles
• Regulation and Properties of PstSCAB, a High-Affinity, High-Velocity Phosphate Transport System ofSinorhizobium meliloti  Journal Articles
• Regulation of Phosphate Assimilation in Rhizobium (Sinorhizobium) meliloti  Journal Articles
• Regulation of a muralytic enzyme-encoding gene by two non-coding RNAs  Journal Articles
• Regulation of hydroperoxidase (catalase) expression inEscherichia coli  Journal Articles
• Regulation of katF and katE in Escherichia coli K-12 by weak acids  Journal Articles
• Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria  Journal Articles
• Regulatory Evolution Drives Evasion of Host Inflammasomes by Salmonella Typhimurium  Journal Articles
• Regulatory evolution at the host–pathogen interface  Journal Articles
• Repression of Intracellular Virulence Factors in Salmonella by the Hha and YdgT Nucleoid-Associated Proteins  Journal Articles
• Role of RpoS in Virulence of Pathogens  Journal Articles
• RpoE fine tunes expression of a subset of SsrB-regulated virulence factors in Salmonella enterica serovar Typhimurium  Journal Articles
• RpoS regulation of gene expression during exponential growth of Escherichia coli K12  Journal Articles
• RpoS-Regulated Genes ofEscherichia coliIdentified by RandomlacZFusion Mutagenesis  Journal Articles
• Salmonella Pathogenicity Island 2 Is Expressed Prior to Penetrating the Intestine  Journal Articles
• SapB and the chaplins: connections between morphogenetic proteins in Streptomyces coelicolor  Journal Articles
• Silencing cryptic specialized metabolism in Streptomyces by the nucleoid-associated protein Lsr2  Journal Articles
• Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium  Journal Articles
• Single-Residue Changes in the C-Terminal Disulfide-Bonded Loop of thePseudomonas aeruginosaType IV Pilin Influence Pilus Assembly and Twitching Motility  Journal Articles
• Site-directed mutagenesis and DNA sequence of pckA of Rhizobium NGR234, encoding phosphoenolpyruvate carboxykinase: gluconeogenesis and host-dependent symbiotic phenotype  Journal Articles
• Sleeping beauty mutase (sbm) is expressed and interacts with ygfd in Escherichia coli  Journal Articles
• Specialized and shared functions of diguanylate cyclases and phosphodiesterases in Streptomyces development  Journal Articles
• SseL Is a Salmonella -Specific Translocated Effector Integrated into the SsrB-Controlled Salmonella Pathogenicity Island 2 Type III Secretion System  Journal Articles
• Stationary phase expression of the arginine biosynthetic operon argCBH in Escherichia coli  Journal Articles
• Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach  Journal Articles
• Streptomyces Exploration: Competition, Volatile Communication and New Bacterial Behaviours  Journal Articles
• Structural Insights into the Regulation of Foreign Genes in Salmonella by the Hha/H-NS Complex  Journal Articles
• Studies of the Interaction of Escherichia coli YjeQ with the Ribosome In Vitro  Journal Articles
• Subinhibitory concentrations of tetracycline affect virulence gene expression in a multi-resistant Salmonella enterica subsp. enterica serovar Typhimurium DT104  Journal Articles
• Swarm-Cell Differentiation in Salmonella enterica Serovar Typhimurium Results in Elevated Resistance to Multiple Antibiotics  Journal Articles
• Synthetic Genetic Interactions Reveal a Dense and Cryptic Regulatory Network of Small Noncoding RNAs in Escherichia coli  Journal Articles
• Targeting Bacterial Secretion Systems: Benefits of Disarmament in the Microcosm  Journal Articles
• The Mycobacterium tuberculosis DosR Regulon Assists in Metabolic Homeostasis and Enables Rapid Recovery from Nonrespiring Dormancy  Journal Articles
• The ARC2 response in Streptomcyes coelicolor requires the global regulatory genes afsR and afsS  Journal Articles
• The Amino Terminus of Bacillus subtilis TagB Possesses Separable Localization and Functional Properties  Journal Articles
• The Conserved Tetratricopeptide Repeat-Containing C-Terminal Domain of Pseudomonas aeruginosa FimV Is Required for Its Cyclic AMP-Dependent and -Independent Functions  Journal Articles
• The Location of Substitutions and Bacterial Genome Arrangements  Journal Articles
• The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti  Journal Articles
• The Pel and Psl polysaccharides provide Pseudomonas aeruginosa structural redundancy within the biofilm matrix  Journal Articles
• The Peptidoglycan-Binding Protein FimV Promotes Assembly of the Pseudomonas aeruginosa Type IV Pilus Secretin  Journal Articles
• The Pseudomonas aeruginosa PilSR Two-Component System Regulates Both Twitching and Swimming Motilities  Journal Articles
• The Therapeutic Pipeline for Pseudomonas aeruginosa Infections  Journal Articles
• The YebC Family Protein PA0964 Negatively Regulates thePseudomonas aeruginosaQuinolone Signal System and Pyocyanin Production  Journal Articles
• The complete sequence of the 1,683-kb pSymB megaplasmid from the N ₂ -fixing endosymbiont Sinorhizobium meliloti  Journal Articles
• The expression of a novel antisense gene mediates incompatibility within the large repABC family of α‐proteobacterial plasmids  Journal Articles
• The lysine acetylome of the nematocidal bacterium Bacillus nematocida and impact of nematode on the acetylome  Journal Articles
• The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterization The GenBank accession number for the sequence reported in this paper is AF286159.  Journal Articles
• The plant signal salicylic acid shuts down expression of the vir regulon and activates quormone-quenching genes in Agrobacterium  Journal Articles
• The rcsA gene of Escherichia coli O9:K30:H12 is involved in the expression of the serotype-specific group I K (capsular) antigen  Journal Articles
• The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella  Journal Articles
• ThemviNhomolog inBurkholderia pseudomalleiis essential for viability and virulence  Journal Articles
• Thermosensing Coordinates a Cis-regulatory Module for Transcriptional Activation of the Intracellular Virulence System in Salmonella enterica Serovar Typhimurium  Journal Articles
• Transcriptional Priming of Salmonella Pathogenicity Island-2 Precedes Cellular Invasion  Journal Articles
• Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two‐component regulator  Journal Articles
• Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics  Journal Articles
• Transcriptional regulation ofsdiAby cAMP-receptor protein, LeuO, and environmental signals inSalmonella entericaserovar Typhimurium  Journal Articles
• Transcriptome Profiling and Functional Analysis ofAgrobacterium tumefaciensReveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved inAgrobacterium-Plant Interactions  Journal Articles
• Type IV pilins regulate their own expression via direct intramembrane interactions with the sensor kinase PilS  Journal Articles
• Type VI Secretion System-Associated Gene Clusters Contribute to Pathogenesis of Salmonella enterica Serovar Typhimurium  Journal Articles
• Use of differential fluorescence induction and optical trapping to isolate environmentally induced genes  Journal Articles
• ‘Exploring’ the regulation of Streptomyces growth and development  Journal Articles