Microbiota
Concept
Vocabulary Service
Overview
subject area of
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Burkholderia
from Fungus Gardens of Fungus-Growing Ants Produces Antifungals That Inhibit the Specialized Parasite
Escovopsis Journal Articles
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StreptomycesVolatile Compounds Influence Exploration and Microbial Community Dynamics by Altering Iron Availability Journal Articles
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A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling Journal Articles
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A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis Journal Articles
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A longitudinal characterization of the Non-Cystic Fibrosis Bronchiectasis airway microbiome Journal Articles
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A marine microbiome antifungal targets urgent-threat drug-resistant fungi Journal Articles
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A rich meconium metabolome in human infants is associated with early-life gut microbiota composition and reduced allergic sensitization Journal Articles
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Altered colonic function and microbiota profile in a mouse model of chronic depression Journal Articles
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Altered microbiomes of aquatic macroinvertebrates and riparian spiders downstream of municipal wastewater effluents Journal Articles
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An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers Journal Articles
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Analysis of the effects of microbiome-related confounding factors on the reproducibility of the volatolomic test Journal Articles
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Antibiotics Potentiate Adherent-InvasiveE. coliInfection and Expansion Journal Articles
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Antibiotics and specialized metabolites from the human microbiota Journal Articles
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Antibiotics and the nervous system: More than just the microbes? Journal Articles
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Antibodies Encoded by FCRL4-Bearing Memory B Cells Preferentially Recognize Commensal Microbial Antigens Journal Articles
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Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections Journal Articles
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Association of high-risk sexual behaviour with diversity of the vaginal microbiota and abundance of Lactobacillus Journal Articles
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Associations of NOD2 polymorphisms with Erysipelotrichaceae in stool of in healthy first degree relatives of Crohn’s disease subjects Journal Articles
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Azithromycin and the microbiota of cystic fibrosis sputum Journal Articles
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Babies, bugs and brains: How the early microbiome associates with infant brain and behavior development Journal Articles
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Beyond mitochondria: Alternative energy-producing pathways from all strata of life Journal Articles
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Biogeography of Bacterial Communities and Specialized Metabolism in Human Aerodigestive Tract Microbiomes Journal Articles
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Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis Journal Articles
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Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk Journal Articles
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Can we manage gut microbiome imbalances in patients with bipolar disorder with pharmacotherapy? Journal Articles
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Canadian Association of Gastroenterology Position Statement: Fecal Microbiota Transplant Therapy Journal Articles
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Capturing the Resistome: a Targeted Capture Method To Reveal Antibiotic Resistance Determinants in Metagenomes Journal Articles
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Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability Journal Articles
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Chronic Embryo‐Larval Exposure of Fathead Minnows to the Pharmaceutical Drug Metformin: Survival, Growth, and Microbiome Responses Journal Articles
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Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing? Journal Articles
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Cobamide Sharing Is Predicted in the Human Skin Microbiome Journal Articles
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Cognitive decline, dietary factors and gut–brain interactions Journal Articles
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Colitis-associated microbiota drives changes in behaviour in male mice in the absence of inflammation Journal Articles
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Commensal microbiota induces colonic barrier structure and functions that contribute to homeostasis Journal Articles
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Comparison of the microbial communities of alpacas and sheep fed diets with three different ratios of corn stalk to concentrate Journal Articles
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Competition among Nasal Bacteria Suggests a Role for Siderophore-Mediated Interactions in Shaping the Human Nasal Microbiota Conferences
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Composition and immunological significance of the upper respiratory tract microbiota Journal Articles
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Convergence of gut microbiomes in myrmecophagous mammals Journal Articles
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Convergent evolution of signal-structure interfaces for maintaining symbioses Journal Articles
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Crohn’s disease proteolytic microbiota enhances inflammation through PAR2 pathway in gnotobiotic mice Journal Articles
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Culture and Molecular Profiling of the Respiratory Tract Microbiota Journal Articles
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Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age Journal Articles
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Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota Journal Articles
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Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities Journal Articles
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Decoding Microbiome Research for Clinical Psychiatry Journal Articles
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Defense contracts: molecular protection in insect-microbe symbioses Journal Articles
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Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease Journal Articles
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Dietary sugar lowers immunity and microbiota that protect against metabolic disease Journal Articles
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Diet–microbial cross–talk underlying increased visceral perception Journal Articles
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Dissecting mechanisms of fecal microbiota transplantation efficacy in disease Journal Articles
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Disturbance–diversity relationships of microbial communities change based on growth substrate Journal Articles
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Divergent maturational patterns of the infant bacterial and fungal gut microbiome in the first year of life are associated with inter-kingdom community dynamics and infant nutrition Journal Articles
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Diversity of the cultivable human gut microbiome involved in gluten metabolism: isolation of microorganisms with potential interest for coeliac disease Journal Articles
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Early infancy microbial and metabolic alterations affect risk of childhood asthma Journal Articles
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Early life nasal microbiota in infants with cystic fibrosis Journal Articles
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Ecobiotherapy Rich in Firmicutes Decreases Susceptibility to Colitis in a Humanized Gnotobiotic Mouse Model Journal Articles
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Effect of biodiesel addition on microbial community structure in a simulated fuel storage system Journal Articles
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Effect of dietary iron supplementation on the equine fecal microbiome. Journal Articles
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Effects of Cadmium Stress on Bacterial and Fungal Communities in the Whitefly Bemisia tabaci Journal Articles
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Effects of copper sulphate and coated copper sulphate addition on lactation performance, nutrient digestibility, ruminal fermentation and blood metabolites in dairy cows Journal Articles
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Effects of municipal wastewater effluents on the digestive gland microbiome of wild freshwater mussels (Lasmigona costata) Journal Articles
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Effects of riboflavin supplementation on performance, nutrient digestion, rumen microbiota composition and activities of Holstein bulls Journal Articles
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Empirical, Metagenomic, and Computational Techniques Illuminate the Mechanisms by which Fungicides Compromise Bee Health Journal Articles
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Endometrial microbiota is more diverse in people with endometriosis than symptomatic controls Journal Articles
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Epidemiology of Asthma and Influence of Ethnicity Journal Articles
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Evaluation of gallnut tannin and
Lactobacillus plantarum
as natural modifiers for alfalfa silage: Ensiling characteristics, in vitro ruminal methane production, fermentation profile and microbiota Journal Articles
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Evolutionary investigations of the biosynthetic diversity in the skin microbiome using lsaBGC Journal Articles
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Experimental evolution makes microbes more cooperative with their local host genotype Journal Articles
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Exploring bacterial pathogen community dynamics in freshwater beach sediments: A tale of two lakes Journal Articles
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Exploring the Cystic Fibrosis Lung Microbiome: Making the Most of a Sticky Situation Journal Articles
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Exposure to high fructose corn syrup during adolescence in the mouse alters hepatic metabolism and the microbiome in a sex‐specific manner Journal Articles
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Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial Journal Articles
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Fecal transplantation Journal Articles
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Fetal meconium does not have a detectable microbiota before birth Journal Articles
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Fluctuations in populations of subsurface methane oxidizers in coordination with changes in electron acceptor availability Journal Articles
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Forces shaping the antibiotic resistome Journal Articles
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Forgotten fungi: the importance of the skin mycobiome Journal Articles
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Fungal DNA barcoding Journal Articles
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Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment Journal Articles
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Gut Microbial and Metabolic Responses to Salmonella enterica Serovar Typhimurium and Candida albicans Journal Articles
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Gut Microbiome and Behavior Chapters
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Gut brain axis: diet microbiota interactions and implications for modulation of anxiety and depression Journal Articles
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Gut microbes and adverse food reactions: Focus on gluten related disorders Journal Articles
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Gut microbiota-based vaccination engages innate immunity to improve blood glucose control in obese mice Journal Articles
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Gut–brain axis: how the microbiome influences anxiety and depression Journal Articles
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High Throughput Co-culture Assays for the Investigation of Microbial Interactions Journal Articles
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant Journal Articles
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Host immune interactions in chronic inflammatory gastrointestinal conditions Journal Articles
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Human macrophage response to microbial supernatants from diabetic foot ulcers Journal Articles
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Human microbiota research in Africa: a systematic review reveals gaps and priorities for future research Journal Articles
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Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study Journal Articles
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Human milk oligosaccharides promote intestinal epithelium regeneration independent of the microbiota during necrotizing enterocolitis Journal Articles
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Human vaginal microbiota colonization is regulated by female sex hormones in a mouse model Journal Articles
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Hydrogen sulphide protects against NSAID‐enteropathy through modulation of bile and the microbiota Journal Articles
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IL-17 Production by γδ+ T Cells Is Critical for Inducing Th17 Responses in the Female Genital Tract and Regulated by Estradiol and Microbiota Journal Articles
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Immunometabolism of obesity and diabetes: microbiota link compartmentalized immunity in the gut to metabolic tissue inflammation Journal Articles
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Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility Journal Articles
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Impact of oil spills on coral reefs can be reduced by bioremediation using probiotic microbiota Journal Articles
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Infant Vitamin D Supplements, Fecal Microbiota and Their Metabolites at 3 Months of Age in the CHILD Study Cohort Journal Articles
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Infant gut microbiota and food sensitization: associations in the first year of life Journal Articles
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Infection in an aging population Journal Articles
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Influence of early environmental factors on lymphocyte subsets and gut microbiota in infants at risk of celiac disease; the PROFICEL study. Journal Articles
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Influence of wastewater microbial community on the performance of miniaturized microbial fuel cell biosensor Journal Articles
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Interleukin-15 Modulates Adipose Tissue by Altering Mitochondrial Mass and Activity Journal Articles
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Intestinal Microbial Composition of Children in a Randomized Controlled Trial of Probiotics to Treat Acute Gastroenteritis Journal Articles
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Intestinal colonization among very low birth weight infants in first week of life Journal Articles
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Intestinal microbiota influence the early postnatal development of the enteric nervous system Journal Articles
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Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model Journal Articles
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L. rhamnosus improves the immune response and tryptophan catabolism in laying hen pullets Journal Articles
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Large freshwater phages with the potential to augment aerobic methane oxidation Journal Articles
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Laryngotracheal Microbiota in Adult Laryngotracheal Stenosis Journal Articles
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Letter to the Editor: Too Soon to Dismiss Inflammation-Related Differences in the Mucosa-Associated Microbiota in Crohn’s Disease Patients Journal Articles
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Leveraging the microbiome to understand clinical heterogeneity in depression: findings from the T-RAD study Journal Articles
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Living in Your Skin: Microbes, Molecules, and Mechanisms Journal Articles
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Long term but not short term exposure to obesity related microbiota promotes host insulin resistance Journal Articles
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Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods Journal Articles
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Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis Journal Articles
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Loss of Microbial Topography Precedes Infection in Infants Journal Articles
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Low dose antibiotic ingestion potentiates systemic and microbiome changes induced by silver nanoparticles Journal Articles
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Making the case for causality: what role do lung microbiota play in idiopathic pulmonary fibrosis? Journal Articles
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Measuring the microbiome of chronic wounds with use of a topical antimicrobial dressing – A feasibility study Journal Articles
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Mechanisms Underlying Food-Triggered Symptoms in Disorders of Gut-Brain Interactions Journal Articles
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Mechanisms of mucosal immunity at the female reproductive tract involved in defense against HIV infection Journal Articles
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Medroxyprogesterone acetate alters the vaginal microbiota and microenvironment in women and increases susceptibility to HIV-1 in humanized mice Journal Articles
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Microbes and mental health: Can the microbiome help explain clinical heterogeneity in psychiatry? Journal Articles
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Microbes are trophic analogs of animals Journal Articles
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Microbe–Immune–Stress Interactions Impact Behaviour during Postnatal Development Journal Articles
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Microbial biogeography of the eastern Yucatán carbonate aquifer Journal Articles
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Microbial colonization programs are structured by breastfeeding and guide healthy respiratory development. Journal Articles
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Microbial communities and soil chemical features associated with commercial production of the medicinal mushroom Ganoderma lingzhi in soil Journal Articles
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Microbial community modulates growth of symbiotic fungus required for stingless bee metamorphosis Journal Articles
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Microbiome functioning depends on individual and interactive effects of the environment and community structure Journal Articles
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Microbiome: fecal transplant in Clostridium difficile and ulcerative colitis Journal Articles
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Microbiome: fecal transplant in Clostridium difficile and ulcerative colitis. Dr. Paul Moayyedi in an interview with Dr. Roman Jaeschke: part 2 Journal Articles
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Microbiome: the beginning of understanding Journal Articles
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Microbiome: the beginning of understanding Dr. Paul Moayyedi in an interview with Dr. Roman Jaeschke: part 1 Journal Articles
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Microbiomes: Getting to the root of the rhizobial competition problem in agriculture Journal Articles
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Microbiomes: How a gut bacterium promotes healthier living in a nematode Journal Articles
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Microbiota and Nod-like receptors balance inflammation and metabolism during obesity and diabetes Journal Articles
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Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants Journal Articles
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Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt Journal Articles
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Microbiota-Immune Interactions in Ulcerative Colitis and Colitis Associated Cancer and Emerging Microbiota-Based Therapies Journal Articles
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Microbiota‐immune alterations in adolescents following early life adversity: A proof of concept study Journal Articles
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Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds Journal Articles
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Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease Journal Articles
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Muramyl Dipeptide-Based Postbiotics Mitigate Obesity-Induced Insulin Resistance via IRF4 Journal Articles
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NSAID enteropathy and bacteria: a complicated relationship Journal Articles
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Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota Journal Articles
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Natural environments in the urban context and gut microbiota in infants Journal Articles
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Networks of human milk microbiota are associated with host genomics, childhood asthma, and allergic sensitization. Journal Articles
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Non-diphtheriae Corynebacterium species are associated with decreased risk of pneumococcal colonization during infancy Journal Articles
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Nutritional profile of rodent diets impacts experimental reproducibility in microbiome preclinical research Journal Articles
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Of the bugs that shape us: maternal obesity, the gut microbiome, and long-term disease risk Journal Articles
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On-going Mechanical Damage from Mastication Drives Homeostatic Th17 Cell Responses at the Oral Barrier Journal Articles
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Optimization of metabolomics of defined in vitro gut microbial ecosystems Journal Articles
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PCB exposure is associated with reduction of endosymbionts in riparian spider microbiomes Journal Articles
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Peripheral and central regulation of insulin by the intestine and microbiome Journal Articles
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Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana Journal Articles
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Postbiotics for NOD2 require nonhematopoietic RIPK2 to improve blood glucose and metabolic inflammation in mice Journal Articles
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Pre-Diagnosis Diet Predicts Response to Exclusive Enteral Nutrition and Correlates with Microbiome in Pediatric Crohn Disease Journal Articles
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Predicting biotic interactions and their variability in a changing environment Journal Articles
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Prenatal vitamin C and fish oil supplement use are associated with human milk microbiota composition in the Canadian CHILD Cohort Study. Journal Articles
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Presence of Archaea in the Indoor Environment and Their Relationships with Housing Characteristics Journal Articles
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Probiotics for the prevention of allergy: A systematic review and meta-analysis of randomized controlled trials Journal Articles
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Probiotics, prebiotics, and the host microbiome: the science of translation Books
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Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies Journal Articles
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Rapid Degradation of Deepwater Horizon Spilled Oil by Indigenous Microbial Communities in Louisiana Saltmarsh Sediments Journal Articles
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Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis Journal Articles
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Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women Journal Articles
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Reply Journal Articles
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Response of stream habitat and microbiomes to spruce budworm defoliation: New considerations for outbreak management. Journal Articles
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Resveratrol improves exercise performance and skeletal muscle oxidative capacity in heart failure Journal Articles
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Role of sex hormones and the vaginal microbiome in susceptibility and mucosal immunity to HIV-1 in the female genital tract Journal Articles
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Role of the Microbiome in Energy Regulation and Metabolism Journal Articles
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SHP‐2 Phosphatase Prevents Colonic Inflammation by Controlling Secretory Cell Differentiation and Maintaining Host‐Microbiota Homeostasis Journal Articles
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Saffron Pre-Treatment Promotes Reduction in Tissue Inflammatory Profiles and Alters Microbiome Composition in Experimental Colitis Mice Journal Articles
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Single cell and tissue-transcriptomic analysis of murine bladders reveals age- and TNFα-dependent but microbiota-independent tertiary lymphoid tissue formation Journal Articles
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Small molecule immunomodulins from cultures of the human microbiome member Lactobacillus plantarum Journal Articles
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Social attraction mediated by fruit flies' microbiome Journal Articles
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Sputum microbiota in adults with CF associates with response to inhaled tobramycin Journal Articles
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Sputum microbiota is predictive of long-term clinical outcomes in young adults with cystic fibrosis Journal Articles
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Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory Journal Articles
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Stable microbial community in compacted bentonite after 5 years of exposure to natural granitic groundwater Journal Articles
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Statistical models and computational algorithms for discovering relationships in microbiome data Journal Articles
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Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy Journal Articles
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Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice Journal Articles
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Streptococcus pneumoniae Colonization Is Required To Alter the Nasal Microbiota in Cigarette Smoke-Exposed Mice Journal Articles
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Sub-communities of the vaginal microbiota in pregnant and non-pregnant women Journal Articles
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Sweat and Sebum Preferences of the Human Skin Microbiota Journal Articles
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Systematic review: effect of probiotics on antibiotic-induced microbiome disruption. Journal Articles
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Systems biosynthesis of secondary metabolic pathways within the oral human microbiome member Streptococcus mutans Journal Articles
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Targeting the Microbiome for Mental Health: Hype or Hope? Journal Articles
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Temporal Stability in Chronic Wound Microbiota Is Associated With Poor Healing Journal Articles
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Tet2 deficiency drives liver microbiome dysbiosis triggering Tc1 cell autoimmune hepatitis Journal Articles
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The Cystic Fibrosis Lung Microbiome Journal Articles
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The Effects of Inflammation, Infection and Antibiotics on the Microbiota-Gut-Brain Axis Chapters
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The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years Journal Articles
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The Evolving Facets of Bacterial Vaginosis: Implications for HIV Transmission Journal Articles
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The HLA-DQ2 genotype selects for early intestinal microbiota composition in infants at high risk of developing coeliac disease Journal Articles
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The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly Journal Articles
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The Microbiome Journal Articles
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The Nasopharyngeal Microbiota of Children With Respiratory Infections in Botswana Journal Articles
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The Recovery, Interpretation and Use of Ancient Pathogen Genomes Journal Articles
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The adoptive transfer of behavioral phenotype via the intestinal microbiota: experimental evidence and clinical implications Journal Articles
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The antimicrobial potential of Streptomyces from insect microbiomes Journal Articles
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The dynamic balance of the skin microbiome across the lifespan Journal Articles
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The effects of cycled inhaled aztreonam on the cystic fibrosis (CF) lung microbiome Journal Articles
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The effects of inhaled aztreonam on the cystic fibrosis lung microbiome Journal Articles
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The hygiene hypothesis, the COVID pandemic, and consequences for the human microbiome Journal Articles
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The influence of the Doce River mouth on the microbiome of nearby coastal areas three years after the Fundão Dam failure, Brazil Journal Articles
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The intestine and the microbiota in maternal glucose homeostasis during pregnancy Journal Articles
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The maternal prenatal and offspring early‐life gut microbiome of childhood asthma phenotypes Journal Articles
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The microbiota-gut-brain axis in functional gastrointestinal disorders Journal Articles
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The microbiota–gut–brain axis in gastrointestinal disorders: stressed bugs, stressed brain or both? Journal Articles
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The otic microbiota and mycobiota in a referral population of dogs in eastern USA with otitis externa Journal Articles
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The outcome and long-term follow-up of 94 patients with recurrent and refractory Clostridium difficile infection using single to multiple fecal microbiota transplantation via retention enema Journal Articles
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The phyllosphere microbiome shifts toward combating melanose pathogen Journal Articles
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The porcine skin microbiome exhibits broad fungal antagonism Journal Articles
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The relationship between sex hormones, the vaginal microbiome and immunity in HIV-1 susceptibility in women Journal Articles
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The role of the microbiome in nonhealing diabetic wounds Journal Articles
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Thousands of small, novel genes predicted in global phage genomes Journal Articles
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Two-for-one: Dual host-microbe functions of S. epidermidis Sph Journal Articles
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Unique Honey Bee (Apis mellifera) Hive Component-Based Communities as Detected by a Hybrid of Phospholipid Fatty-Acid and Fatty-Acid Methyl Ester Analyses Journal Articles
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Unique microbial-derived volatile organic compounds in portal venous circulation in murine non-alcoholic fatty liver disease Journal Articles
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Universal microbial reworking of dissolved organic matter along environmental gradients Journal Articles
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Upper respiratory microbial communities of healthy populations are shaped by niche and age. Journal Articles
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Vagal Pathways for Microbiome-Brain-Gut Axis Communication Chapters
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Vaginal microbiota associated with oncogenic HPV in a cohort of HPV-vaccinated women living with HIV Journal Articles
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What to Expect When You’re Expectorating: Cystic Fibrosis Exacerbations and Microbiota Journal Articles
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Who’s talking to whom: microbiome-enteric nervous system interactions in early life Journal Articles
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mbtransfer: Microbiome intervention analysis using transfer functions and mirror statistics Journal Articles