Evolution, Molecular Concept

subject area of

• 17th Century Variola Virus Reveals the Recent History of Smallpox  Academic Article
• d -Ala- d -Ala ligases from glycopeptide antibiotic-producing organisms are highly homologous to the enterococcal vancomycin-resistance ligases VanA and VanB  Academic Article
• A Genomic Comparison of Faster-Sex, Faster-X, and Faster-Male Evolution Between Drosophila melanogaster and Drosophila pseudoobscura  Academic Article
• A Large Pseudoautosomal Region on the Sex Chromosomes of the Frog Silurana tropicalis  Academic Article
• A Population Genetics Model for Multiple Quantitative Traits Exhibiting Pleiotropy and Epistasis  Academic Article
• A Single Amino Acid Change in the Response Regulator PhoP, Acquired during Yersinia pestis Evolution, Affects PhoP Target Gene Transcription and Polymyxin B Susceptibility  Academic Article
• A Thermodynamic Basis for Prebiotic Amino Acid Synthesis and the Nature of the First Genetic Code  Academic Article
• A Unified Model of Codon Reassignment in Alternative Genetic Codes  Academic Article
• A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘sexomics’  Academic Article
• A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads  Academic Article
• A comprehensive genomic history of extinct and living elephants  Academic Article
• A draft genome of Yersinia pestis from victims of the Black Death  Academic Article
• A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code  Academic Article
• A functionally divergent hydrogenosomal peptidase with protomitochondrial ancestry  Academic Article
• A general mechanism for conditional expression of exaggerated sexually-selected traits  Academic Article
• A heteroplasmic mitochondrial complex I gene mutation in adult-onset dystonia  Academic Article
• A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution  Academic Article
• A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history  Academic Article
• A phylogenomic framework and timescale for comparative studies of tunicates  Academic Article
• A spliceosomal intron in Giardia lamblia  Academic Article
• A unique Malpighian tubule architecture in Tribolium castaneum informs the evolutionary origins of systemic osmoregulation in beetles  Academic Article
• Abundant sequence variation around the mitochondrial origin of replication in the human opportunistic yeast pathogen Candida albicans from a tropical island in China  Academic Article
• Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates  Academic Article
• Aminoglycoside phosphotransferases: proteins, structure, and mechanism  Academic Article
• An Evolutionary Genetic Perspective of Eating Disorders  Academic Article
• An ancestral mitochondrial DNA resembling a eubacterial genome in miniature  Academic Article
• An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models  Academic Article
• Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes  Academic Article
• Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus)  Academic Article
• Ancient DNA and the tropics: a rodent's tale  Academic Article
• Ancient selection for derived alleles at a GDF5 enhancer influencing human growth and osteoarthritis risk  Academic Article
• Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta)  Academic Article
• AnnoTree: visualization and exploration of a functionally annotated microbial tree of life  Academic Article
• Armadillos exhibit less genetic polymorphism in North America than in South America: nuclear and mitochondrial data confirm a founder effect in Dasypus novemcinctus (Xenarthra)  Academic Article
• Asymmetrical Evolution of Cytochrome bd Subunits  Academic Article
• Bacterial evolution: Making a host-adapted bacterium  Academic Article
• Bats and Coronaviruses  Academic Article
• Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution  Academic Article
• Botulinum neurotoxin homologs in non-Clostridiumspecies  Academic Article
• Broad-sense sexual selection, sex gene pool evolution, and speciation  Academic Article
• Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites  Academic Article
• Caenorhabditis briggsae Recombinant Inbred Line Genotypes Reveal Inter-Strain Incompatibility and the Evolution of Recombination  Academic Article
• Cancer phenomics: RET and PTEN as illustrative models  Academic Article
• Characterization of a cetacean aromatase (CYP19) and the phylogeny and functional conservation of vertebrate aromatase  Academic Article
• Characterization of the mouse lysosomal sialidase promoter  Academic Article
• Childhood cerebellar tumours mirror conserved fetal transcriptional programs  Academic Article
• Chimeric Structure of the NAD(P)+- and NADP+-dependent Malic Enzymes ofRhizobium (Sinorhizobium) meliloti  Academic Article
• Chlamydiae-specific proteins and indels: novel tools for studies  Academic Article
• Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans  Academic Article
• Clades of huge phages from across Earth’s ecosystems  Academic Article
• Co-operation between Polymerases and Nucleotide Synthetases in the RNA World  Academic Article
• Codon Usage and Selection on Proteins  Academic Article
• Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection  Academic Article
• Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus  Academic Article
• Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage  Academic Article
• Cold-Active Winter Rye Glucanases with Ice-Binding Capacity  Academic Article
• Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum  Academic Article
• Comments on “Evolutionary dynamics of RNA-like replicator systems”  Academic Article
• Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution  Academic Article
• Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes  Academic Article
• Comparative molecular phylogeography of two Xenopus species, X. gilli and X. laevis, in the south‐western Cape Province, South Africa  Academic Article
• Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris  Academic Article
• Compensatory neutral mutations and the evolution of RNA.  Academic Article
• Conservation of Lotus and Arabidopsis Basic Helix-Loop-Helix Proteins Reveals New Players in Root Hair Development      Academic Article
• Conserved Features and Evolutionary Shifts of the EDA Signaling Pathway Involved in Vertebrate Skin Appendage Development  Academic Article
• Conserved domains of the class A scavenger receptors: evolution and function  Academic Article
• Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth  Academic Article
• Constraining the Time Interval for the Origin of Life on Earth  Academic Article
• Contemporary Gene Flow is a Major Force Shaping the Aspergillus fumigatus Population in Auckland, New Zealand  Academic Article
• Correlations in the population structure of music, genes and language  Academic Article
• DIVERSIFICATION OF SULAWESI MACAQUE MONKEYS: DECOUPLED EVOLUTION OF MITOCHONDRIAL AND AUTOSOMAL DNA  Academic Article
• DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms  Academic Article
• DNA and the revolutions of molecular evolution, computational biology, and bioinformatics  Academic Article
• DNAzymes: From Creation In Vitro to Application In Vivo  Academic Article
• Darwin to DNA, molecules to morphology: the end of classical population genetics and the road ahead  Academic Article
• Detecting recent speciation events: the case of the finless porpoise (genus Neophocaena)  Academic Article
• Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum  Academic Article
• Developmental Systems Drift and the Drivers of Sex Chromosome Evolution  Academic Article
• Directionality in the evolution of influenza A haemagglutinin  Academic Article
• Divergence, hybridization, and recombination in the mitochondrial genome of the human pathogenic yeastCryptococcus gattii  Academic Article
• Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus)  Academic Article
• Divergent subgenome evolution in the allotetraploid frog Xenopus calcaratus  Academic Article
• Diversity Considerations in HIV-1 Vaccine Selection  Academic Article
• Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?  Academic Article
• Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution  Academic Article
• Drainage isolation and climate change-driven population expansion shape the genetic structures of Tuber indicum complex in the Hengduan Mountains region  Academic Article
• Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization  Academic Article
• EVOLUTION OF THE CLOSELY RELATED, SEX-RELATED GENES DM-W AND DMRT1 IN AFRICAN CLAWED FROGS (XENOPUS)  Academic Article
• Ecological and physical barriers shape genetic structure of the Alpine porcini (Boletus reticuloceps)  Academic Article
• Effects of contact structure on the transient evolution of HIV virulence  Academic Article
• Enzyme Evolution Explained (Sort Of)  Academic Article
• Erratum to “Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms” [Phytochemistry 66 (2005) 1374–1393]  Academic Article
• Estimating Selection Pressures from Limited Comparative Data  Academic Article
• Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss  Academic Article
• Estimation of Gene Insertion/Deletion Rates with Missing Data  Academic Article
• Evidence for canalization of Distal-less function in the leg of Drosophila melanogaster  Academic Article
• Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms.  Academic Article
• Evolution and persistence of influenza A and other diseases  Academic Article
• Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia  Academic Article
• Evolution of Proteasome Regulators in Eukaryotes  Academic Article
• Evolution of RAG-1 in Polyploid Clawed Frogs  Academic Article
• Evolution of Salmonella-Host Cell Interactions through a Dynamic Bacterial Genome  Academic Article
• Evolution of Simple Sequence in Proteins  Academic Article
• Evolution of Transcriptional Repressors Impacts Caenorhabditis Vulval Development  Academic Article
• Evolution of an Enzyme from a Noncatalytic Nucleic Acid Sequence  Academic Article
• Evolution of genes and genomes on the Drosophila phylogeny  Academic Article
• Evolution of mitochondrial-encoded cytochrome oxidase subunits in endothermic fish: The importance of taxon-sampling in codon-based models  Academic Article
• Evolution of protein interfaces in multimers and fibrils  Academic Article
• Evolution of the Largest Mammalian Genome  Academic Article
• Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria  Academic Article
• Evolution of the nuclear-encoded cytochrome oxidase subunits in vertebrates  Academic Article
• Evolutionary affinity of billfishes (Xiphiidae and Istiophoridae) and flatfishes (Plueronectiformes): Independent and trans-subordinal origins of endothermy in teleost fishes  Academic Article
• Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta  Academic Article
• Evolutionary and Functional Analyses of the Interaction between the Myeloid Restriction Factor SAMHD1 and the Lentiviral Vpx Protein  Academic Article
• Evolutionary and cellular webs in benzylisoquinoline alkaloid biosynthesis  Academic Article
• Evolutionary and functional diversity of thePseudomonastype IVa pilin island  Academic Article
• Evolutionary and mechanistic insights into substrate and product accommodation of CTP:phosphocholine cytidylyltransferase from Plasmodium falciparum  Academic Article
• Evolutionary implications of the relationship between genome size and body size in flatworms and copepods  Academic Article
• Evolutionary origins of two tightly linked mutations in arylsulfatase-A pseudodeficiency  Academic Article
• Evolutionary relationships among photosynthetic prokaryotes (Heliobacterium chlorum, Chloroflexus aurantiacus, cyanobacteria, Chlorobium tepidum and proteobacteria): implications regarding the origin of photosynthesis  Academic Article
• Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction  Academic Article
• Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences  Academic Article
• Factors affecting germline mutations in a hypervariable microsatellite: A comparative analysis of six species of swallows (Aves: Hirundinidae)  Academic Article
• Fluctuation domains in adaptive evolution  Academic Article
• Fossil Rhabdoviral Sequences Integrated into Arthropod Genomes: Ontogeny, Evolution, and Potential Functionality  Academic Article
• From p63 to p53 across p73  Academic Article
• Functional Divergence in the Arabidopsis  -1,3-Glucanase Gene Family Inferred by Phylogenetic Reconstruction of Expression States  Academic Article
• Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae  Academic Article
• Fundamentals of Fungal Molecular Population Genetic Analyses  Academic Article
• Fungal mitochondrial genomes and genetic polymorphisms  Academic Article
• Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?  Academic Article
• Gene duplication and divergence produce divergent MHC genotypes without disassortative mating  Academic Article
• Genetic Changes Accompanying the Evolution of Host Specialization in Drosophila sechellia  Academic Article
• Genome duplication events have led to a diversification in the CPT I gene family in fish  Academic Article
• Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A  Academic Article
• Genome sequence of the Brown Norway rat yields insights into mammalian evolution  Academic Article
• Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche  Academic Article
• Genomic Dynamics of Transposable Elements in the Western Clawed Frog (Silurana tropicalis)  Academic Article
• Genomic insights into the evolution and ecology of botulinum neurotoxins  Academic Article
• Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria  Academic Article
• Heterotachy and long-branch attraction in phylogenetics  Academic Article
• High divergence of reproductive tract proteins and their association with postzygotic reproductive isolation in Drosophila melanogaster and Drosophila virilis group species  Academic Article
• High rates of lateral gene transfer are not due to false diagnosis of gene absence  Academic Article
• Horizontal Gene Transfer Contributed to the Evolution of Extracellular Surface Structures: The Freshwater Polyp Hydra Is Covered by a Complex Fibrous Cuticle Containing Glycosaminoglycans and Proteins of the PPOD and SWT (Sweet Tooth) Families  Academic Article
• Identification of a diphtheria toxin‐like gene family beyond theCorynebacteriumgenus  Academic Article
• Identification of the Regulatory Logic Controlling Salmonella Pathoadaptation by the SsrA-SsrB Two-Component System  Academic Article
• Increased Polymorphism Near Low-Complexity Sequences across the Genomes of Plasmodium falciparum Isolates  Academic Article
• Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins  Academic Article
• Inferring Bacterial Genome Flux While Considering Truncated Genes  Academic Article
• Inferring sequence regions under functional divergence in duplicate genes  Academic Article
• Influence of Humans on Evolution and Mobilization of Environmental Antibiotic Resistome  Academic Article
• Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans.  Academic Article
• Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster  Academic Article
• Intron-specific patterns of divergence of lin-11 regulatory function in the C. elegans nervous system  Academic Article
• JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL  Academic Article
• Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits  Academic Article
• Les datations moléculaires à l’heure de la génomique  Academic Article
• Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals  Academic Article
• Lessons from the Environmental Antibiotic Resistome  Academic Article
• Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function  Academic Article
• Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations  Conference Paper
• Low Complexity Regions in Mammalian Proteins are Associated with Low Protein Abundance and High Transcript Abundance  Academic Article
• Low-complexity sequences and single amino acid repeats: not just “junk” peptide sequences  Academic Article
• Male sex drive and the masculinization of the genome  Academic Article
• Mammalian Sperm Proteins Are Rapidly Evolving: Evidence of Positive Selection in Functionally Diverse Genes  Academic Article
• Microbial systematics in the post-genomics era  Academic Article
• Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements  Academic Article
• Mitonuclear interactions and introgression genomics of macaque monkeys ( Macaca ) highlight the influence of behaviour on genome evolution  Academic Article
• Modular Evolution and the Origins of Symmetry: Reconstruction of a Three-Fold Symmetric Globular Protein  Academic Article
• Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose  Academic Article
• Molecular Evolution of Respiratory Syncytial Virus Fusion Gene, Canada, 2006–2010  Academic Article
• Molecular Phylogeny of Living Xenarthrans and the Impact of Character and Taxon Sampling on the Placental Tree Rooting  Academic Article
• Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs <b><i>(Xenopus)</i></b>  Academic Article
• Molecular evidence for increased regulatory conservation during metamorphosis, and against deleterious cascading effects of hybrid breakdown in Drosophila  Academic Article
• Molecular evidence of sequential evolution of DDT- and pyrethroid-resistant sodium channel in Aedes aegypti  Academic Article
• Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii  Academic Article
• Molecular signatures for the main phyla of photosynthetic bacteria and their subgroups  Academic Article
• Molecular, developmental, and evolutionary genetic studies highlight rapid evolution of genes and genetic systems  Academic Article
• Multicopy gene family evolution on primate Y chromosomes  Academic Article
• Multilocus sequence analyses reveal extensive diversity and multiple origins of fluconazole resistance in Candida tropicalis from tropical China  Academic Article
• Multiple Mechanisms Promote the Retained Expression of Gene Duplicates in the Tetraploid Frog Xenopus laevis  Academic Article
• Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungusCryptococcus neoformans  Academic Article
• Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD  Academic Article
• Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins  Academic Article
• Naked but Not Hairless: The Pitfalls of Analyses of Molecular Adaptation Based on Few Genome Sequence Comparisons  Academic Article
• Natural Selection for Nucleotide Usage at Synonymous and Nonsynonymous Sites in Influenza A Virus Genes  Academic Article
• Neurological Proteins Are Not Enriched For Repetitive Sequences  Academic Article
• New Insights into 1-Aminocyclopropane-1-Carboxylate (ACC) Deaminase Phylogeny, Evolution and Ecological Significance  Academic Article
• New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog X. borealis  Academic Article
• Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)  Academic Article
• Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach’s storm-petrel  Academic Article
• Novel Insights Into Immune Systems of Bats  Academic Article
• Novel Molecular Signatures in the PIP4K/PIP5K Family of Proteins Specific for Different Isozymes and Subfamilies Provide Important Insights into the Evolutionary Divergence of this Protein Family  Academic Article
• Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales  Academic Article
• On selection in finite populations  Academic Article
• On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network  Academic Article
• Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila  Academic Article
• Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins  Academic Article
• Origin and evolution of gene families in Bacteria and Archaea  Academic Article
• Origin of the RNA world: The fate of nucleobases in warm little ponds  Academic Article
• OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals  Academic Article
• Osteocalcin protein sequences of Neanderthals and modern primates  Academic Article
• Partial 28S rDNA Sequences and the Antiquity of Hydrothermal Vent Endemic Gastropods  Academic Article
• Pathways of Genetic Code Evolution in Ancient and Modern Organisms  Academic Article
• Patterns of Bacterial Gene Movement  Academic Article
• Pervasive Cryptic Epistasis in Molecular Evolution  Academic Article
• Phage–antibiotic combinations: a promising approach to constrain resistance evolution in bacteria  Academic Article
• Phenotypic Divergence along Geographic Gradients Reveals Potential for Rapid Adaptation of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans, in North America  Academic Article
• Phylogenetic Analysis of the Cytochrome P450 3 (CYP3) Gene Family  Academic Article
• Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species.  Academic Article
• Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family  Academic Article
• Phylogenetic and functional analyses of the cytochrome P450 family 4  Academic Article
• Phylogenetic reconciliation reveals the natural history of glycopeptide antibiotic biosynthesis and resistance  Academic Article
• Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups  Academic Article
• Phylogenomics and the reconstruction of the tree of life  Academic Article
• Phylogenomics of 8,839 Clostridioides difficile genomes reveals recombination-driven evolution and diversification of toxin A and B  Academic Article
• Population Genetic Structure of Aldabra Giant Tortoises  Academic Article
• Population Genetics Without Intraspecific Data  Academic Article
• Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa  Academic Article
• Possible Roles of Exceptionally Conserved Residues around the Selectivity Filters of Sodium and Calcium Channels  Academic Article
• Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins  Academic Article
• Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes  Academic Article
• Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution  Academic Article
• RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods  Academic Article
• RNA secondary structure: physical and computational aspects  Academic Article
• Rainbow trout exposed to benzo[a]pyrene yields conserved microRNA binding sites in DNA methyltransferases across 500 million years of evolution  Academic Article
• Rapid Evolution Through Gene Duplication and Subfunctionalization of the Testes-Specific α4 Proteasome Subunits in DrosophilaSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY542377, AY542378, AY542379, AY542380, AY542381, AY542382, AY542383, AY542384, AY542385, AY542386, AY542387, AY542388, AY542389, AY542390, AY542391, AY542392, AY542393, AY542394, AY542395, AY542396, AY542397, AY542398, AY542399, AY542400, AY542401, AY542402, AY542403, AY542404, AY542405, AY542406, AY542407, AY542408, AY542409, AY542410, AY542411, AY542412, AY542413, AY542414, AY542415, AY542416, AY542417, AY542418, AY542419, AY542420, AY542421, AY542422, AY542423, AY542424, AY542425, AY542426, AY542427, AY542428, AY542429, AY542430, AY542431, AY542432.  Academic Article
• Rapid Evolution of Outer Egg Membrane Proteins in the Drosophila melanogaster Subgroup: A Case of Ecologically Driven Evolution of Female Reproductive Traits  Academic Article
• Rapid Evolution of cis-Regulatory Sequences via Local Point Mutations  Academic Article
• Rapid Evolution of the Sex-Determining Gene, transformer: Structural Diversity and Rate Heterogeneity Among Sibling Species of Drosophila  Academic Article
• Rapidly Evolving Genes of Drosophila: Differing Levels of Selective Pressure in Testis, Ovary, and Head Tissues Between Sibling Species  Academic Article
• Reduced Representation Genome Sequencing Suggests Low Diversity on the Sex Chromosomes of Tonkean Macaque Monkeys  Academic Article
• Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus)  Academic Article
• Regulatory evolution at the host–pathogen interface  Academic Article
• Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech)  Academic Article
• Replication of an Egfr-Wing Shape Association in a Wild-Caught Cohort of Drosophila melanogaster  Academic Article
• Resolving the root of the avian mitogenomic tree by breaking up long branches  Academic Article
• Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths)  Academic Article
• Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti  Academic Article
• Searching for Substitution Rate Heterogeneity  Academic Article
• Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849  Academic Article
• Selection and Slippage Creating Serine Homopolymers  Academic Article
• Sequence variation at the major histocompatibility complex DRB loci in beluga ( Delphinapterus leucas ) and narwhal ( Monodon monoceros )  Academic Article
• Sex gene pool evolution and speciation: A new paradigm  Academic Article
• Sex-Linked Mammalian Sperm Proteins Evolve Faster Than Autosomal Ones  Academic Article
• Sex-Specific Functional Specialization and the Evolutionary Rates of Essential Fertility Genes  Academic Article
• Sex-related genes, directional sexual selection, and speciation  Academic Article
• Sexual Selection and Maintenance of Sex: Evidence from Comparisons of Rates of Genomic Accumulation of Mutations and Divergence of Sex-Related Genes in Sexual and Hermaphroditic Species of Caenorhabditis  Academic Article
• Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans  Academic Article
• Signature Sequences in Diverse Proteins Provide Evidence of a Close Evolutionary Relationship Between the Deinococcus-Thermus Group and Cyanobacteria  Academic Article
• Signature proteins that are distinctive of alpha proteobacteria  Academic Article
• Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements  Academic Article
• Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome  Academic Article
• Tetracycline-resistant coliforms in the effluent of the main sewage treatment plant in Hamilton, Ontario — do they have a common ancestral strain?  Academic Article
• The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus  Academic Article
• The Composite Genome of the Legume Symbiont Sinorhizobium meliloti  Academic Article
• The Divided Bacterial Genome: Structure, Function, and Evolution  Academic Article
• The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes  Academic Article
• The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia  Academic Article
• The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance  Academic Article
• The Location of Substitutions and Bacterial Genome Arrangements  Academic Article
• The Pattern of Amino Acid Replacements in α/β-Barrels  Academic Article
• The Phylogeny and Signature Sequences Characteristics ofFibrobacteres,Chlorobi, andBacteroidetes  Academic Article
• The RNA World: molecular cooperation at the origins of life  Academic Article
• The Recovery, Interpretation and Use of Ancient Pathogen Genomes  Academic Article
• The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes  Academic Article
• The Rift Valley is a major barrier to dispersal of African clawed frogs (Xenopus) in Ethiopia  Academic Article
• The Roles of Standing Genetic Variation and Evolutionary History in Determining the Evolvability of Anti-Predator Strategies  Academic Article
• The advantage of recombination when selection is acting at many genetic Loci  Academic Article
• The advantages and disadvantages of horizontal gene transfer and the emergence of the first species  Academic Article
• The antibiotic resistome: the nexus of chemical and genetic diversity  Academic Article
• The effects of environmental and genetic factors on the germination of basidiospores in the Cryptococcus gattii species complex  Academic Article
• The evolution of antibiotic production rate in a spatial model of bacterial competition  Academic Article
• The evolution of the class A scavenger receptors  Academic Article
• The fate of laterally transferred genes: Life in the fast lane to adaptation or death  Academic Article
• The inheritance of organelle genes and genomes: patterns and mechanisms  Academic Article
• The odds of duplicate gene persistence after polyploidization  Academic Article
• The origin recognition complex protein family  Academic Article
• The paradox of HBV evolution as revealed from a 16th century mummy  Academic Article
• The proto-oncogene C-KIT maps to canid B-chromosomes  Academic Article
• The role of laterally transferred genes in adaptive evolution  Academic Article
• The shortest telomeres drive karyotype evolution in transformed cells  Academic Article
• The structural basis of molecular adaptation  Academic Article
• Thrice better than once: quality control guidelines to validate new mitogenomes  Academic Article
• Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?  Academic Article
• Tipping the scales: Evolution of the allometric slope independent of average trait size  Academic Article
• Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis  Academic Article
• Trends in DNA barcoding and metabarcoding  Academic Article
• Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny  Academic Article
• Tunicates and not cephalochordates are the closest living relatives of vertebrates  Academic Article
• Uncorrected Nucleotide Bias in mtDNA Can Mimic the Effects of Positive Darwinian Selection  Academic Article
• Uncovering rate variation of lateral gene transfer during bacterial genome evolution  Academic Article
• Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods  Academic Article
• Xenopus fraseri: Mr. Fraser, where did your frog come from?  Academic Article
• Yersinia pestis: New Evidence for an Old Infection  Academic Article
• [MOLECULAR EVOLUTION OF ION CHANNELS: AMINO ACID SEQUENCES AND 3D STRUCTURES].  Academic Article
• p73 and p63: Why Do We Still Need Them?  Academic Article