Transcriptome Concept

subject area of

• RNA‐sequencing profiles hippocampal gene expression in a validated model of cancer‐induced depression  Journal Articles
• A Cancer Stem Cell Model for Studying Brain Metastases From Primary Lung Cancer  Journal Articles
• A Combination of Chemotherapy and Oncolytic Virotherapy Sensitizes Colorectal Adenocarcinoma to Immune Checkpoint Inhibitors in a cDC1-Dependent Manner  Journal Articles
• A Comprehensive, Ethnically Diverse Library of Sickle Cell Disease-Specific Induced Pluripotent Stem Cells  Journal Articles
• A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease  Journal Articles
• A human-based multi-gene signature enables quantitative drug repurposing for metabolic disease  Journal Articles
• A phylogenomic framework and timescale for comparative studies of tunicates  Journal Articles
• A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach  Journal Articles
• Adaptive Shifts in Gene Regulation Underlie a Developmental Delay in Thermogenesis in High-Altitude Deer Mice  Journal Articles
• Alterations in skeletal muscle repair in young adults with type 1 diabetes mellitus  Journal Articles
• Altered microRNA Transcriptome in Cultured Human Airway Cells upon Infection with SARS-CoV-2  Journal Articles
• Altered peritumoral microRNA expression predicts head and neck cancer patients with a high risk of recurrence  Journal Articles
• Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)  Journal Articles
• Ano1 is a better marker than c-Kit for transcript analysis of single interstitial cells of Cajal in culture  Journal Articles
• Behavioral and hypothalamic transcriptome analyses reveal sex-specific responses to phenanthrene exposure in the fathead minnow (Pimephales promelas)  Journal Articles
• Berberine Prevents Disease Progression of Nonalcoholic Steatohepatitis through Modulating Multiple Pathways  Journal Articles
• Bisphenol A in eggs causes development-specific liver molecular reprogramming in two generations of rainbow trout  Journal Articles
• CD70 as an actionable immunotherapeutic target in recurrent glioblastoma and its microenvironment  Journal Articles
• Cancer Stem Cells: Current Challenges and Future Perspectives  Chapters
• Charting the transcriptomic landscape of primary and metastatic cancers in relation to their origin and target normal tissues.  Journal Articles
• Childhood cerebellar tumours mirror conserved fetal transcriptional programs  Journal Articles
• Clonally selected primitive endothelial cells promote occlusive pulmonary arteriopathy and severe pulmonary hypertension in rats exposed to chronic hypoxia  Journal Articles
• Community-wide hackathons to identify central themes in single-cell multi-omics  Journal Articles
• Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria  Journal Articles
• Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems  Journal Articles
• Construction of a set of novel and robust gene expression signatures predicting prostate cancer recurrence  Journal Articles
• Consumption of guar gum and retrograded high-amylose corn resistant starch increases IL-10 abundance without affecting pro-inflammatory cytokines in the colon of pigs fed a high-fat diet1  Journal Articles
• Cross-species transcriptomic analysis elucidates constitutive aryl hydrocarbon receptor activity.  Journal Articles
• Current Practices for Reference Gene Selection in RT-qPCR of Aspergillus: Outlook and Recommendations for the Future  Journal Articles
• Cytokine profile in lung transplant recipients with Aspergillus spp colonization  Journal Articles
• DNA damage response coregulator ddrR affects many cellular pathways and processes in Acinetobacter baumannii 17978.  Journal Articles
• Deciphering the role of SPL12 and AGL6 from a genetic module that functions in nodulation and root regeneration in Medicago sativa  Journal Articles
• Determining the effects of paternal obesity on sperm chromatin at histone H3 lysine 4 tri-methylation in relation to the placental transcriptome and cellular composition.  Journal Articles
• Developmental alterations in CNS stress-related gene expression following postnatal immune activation  Journal Articles
• Diagnostic potential of genomic blood biomarkers of pulmonary fibrosis in a prospective cohort.  Journal Articles
• Diet-Induced Developmental Acceleration Independent of TOR and Insulin in C. elegans  Journal Articles
• Differential expression of transcriptional regulatory units in the prefrontal cortex of patients with bipolar disorder: potential role of early growth response gene 3  Journal Articles
• Drug Repurposing and Personalized Treatment Strategies for Bipolar Disorder Using Transcriptomic  Journal Articles
• Endoplasmic reticulum stress inhibition attenuates hypertensive chronic kidney disease through reduction in proteinuria  Journal Articles
• Estimation of weighted log partial area under the ROC curve and its application to MicroRNA expression data  Journal Articles
• Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.  Journal Articles
• Evolution of salinity tolerance from transcriptome to physiological system  Journal Articles
• Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease  Journal Articles
• FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE  Journal Articles
• Finite mixtures of matrix variate Poisson-log normal distributions for three-way count data  Journal Articles
• FoxG1 Interacts with Bmi1 to Regulate Self-Renewal and Tumorigenicity of Medulloblastoma Stem Cells  Journal Articles
• From ‘Omics to Multi-omics Technologies: the Discovery of Novel Causal Mediators  Journal Articles
• Gene Expression Profiles in White Blood Cells of Volunteers Exposed to a 50 Hz Electromagnetic Field  Journal Articles
• Gene expression changes during Giardia–host cell interactions in serum-free medium  Journal Articles
• Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing  Journal Articles
• Genome-Wide Temporal Gene Expression Reveals a Post-Reproductive Shift in the Nematode Caenorhabditis briggsae.  Journal Articles
• Genome-wide association study of emotional empathy in children  Journal Articles
• Genome-wide comparisons of gene expression in adult versus elderly burn patients  Journal Articles
• Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress  Journal Articles
• Gli3-mediated hedgehog inhibition in human pluripotent stem cells initiates and augments developmental programming of adult hematopoiesis  Journal Articles
• Global transcriptome analysis identifies weight regain-induced activation of adaptive immune responses in white adipose tissue of mice  Journal Articles
• Hepatic gene expression profiling in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil  Journal Articles
• Hotspot Mutations in H3F3A and IDH1 Define Distinct Epigenetic and Biological Subgroups of Glioblastoma  Journal Articles
• How consistent are we? Interlaboratory comparison study in fathead minnows using the model estrogen 17α‐ethinylestradiol to develop recommendations for environmental transcriptomics  Journal Articles
• Human Embryonic Stem Cell-Derived Hematopoietic Cells Maintain Core Epigenetic Machinery of the Polycomb Group/Trithorax Group Complexes Distinctly from Functional Adult Hematopoietic Stem Cells  Journal Articles
• Identifying transcriptomic indicators of tertiary treated municipal effluent in longnose dace (Rhinichthys cataractae) caged under semi-controlled conditions in experimental raceways  Journal Articles
• Impact of Cigarette Smoke on the Human and Mouse Lungs: A Gene-Expression Comparison Study  Journal Articles
• Increased proliferation of hepatic periportal ductal progenitor cells contributes to persistent hypermetabolism after trauma  Journal Articles
• Insights into the Development and Evolution of Exaggerated Traits Using De Novo Transcriptomes of Two Species of Horned Scarab Beetles  Journal Articles
• Integrated genome and transcriptome sequencing identifies a noncoding mutation in the genome replication factor DONSON as the cause of microcephaly-micromelia syndrome  Journal Articles
• Interspecies Systems Biology Uncovers Metabolites Affecting C. elegans Gene Expression and Life History Traits  Journal Articles
• Investigating Immune Gene Signatures in Peripheral Blood from Subjects with Allergic Rhinitis Undergoing Nasal Allergen Challenge  Journal Articles
• Loss of T cells influences sex differences in stress-related gene expression  Journal Articles
• MMP9 Differentially Regulates Proteins Involved in Actin Polymerization and Cell Migration during TGF-β-Induced EMT in the Lens  Journal Articles
• Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms  Journal Articles
• Medroxyprogesterone acetate‐treated human, primary endometrial epithelial cells reveal unique gene expression signature linked to innate immunity and HIV‐1 susceptibility  Journal Articles
• Metabolic suppression identifies new antibacterial inhibitors under nutrient limitation  Journal Articles
• Metatranscriptomic RNA-Seq Data Analysis of Virus-Infected Host Cells  Journal Articles
• Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection.  Journal Articles
• MiR-191 as a Key Molecule in Aneurysmal Aortic Remodeling  Journal Articles
• MiR-204 down-regulation elicited perturbation of a gene target signature common to human cholangiocarcinoma and gastric cancer  Journal Articles
• MicroRNA Signature in Metastatic Colorectal Cancer Patients Treated With Anti-EGFR Monoclonal Antibodies  Journal Articles
• Molecular Hallmarks of Multiparametric Magnetic Resonance Imaging Visibility in Prostate Cancer  Journal Articles
• Molecular initiating events of the intersex phenotype: Low-dose exposure to 17α-ethinylestradiol rapidly regulates molecular networks associated with gonad differentiation in the adult fathead minnow testis  Journal Articles
• Molecular signatures that are distinctive characteristics of the vertebrates and chordates and supporting a grouping of vertebrates with the tunicates  Journal Articles
• Multi-ethnic genome-wide association study for atrial fibrillation  Journal Articles
• Multi-level cellular and functional annotation of single-cell transcriptomes using scPipeline  Journal Articles
• Neural Cell Adhesion Protein CNTN1 Promotes the Metastatic Progression of Prostate Cancer  Journal Articles
• PBMCs-Derived microRNA Signature as a Prethrombotic Status Discriminator in Stable Coronary Artery Disease  Journal Articles
• PRY-1/Axin signaling regulates lipid metabolism in Caenorhabditis elegans  Journal Articles
• Part A: Temporal and dose-dependent transcriptional responses in the liver of fathead minnows following short term exposure to the polycyclic aromatic hydrocarbon phenanthrene  Journal Articles
• Part B: Morphometric and transcriptomic responses to sub-chronic exposure to the polycyclic aromatic hydrocarbon phenanthrene in the fathead minnow (Pimephales promelas)  Journal Articles
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Journal Articles
• Population-Based Study to Determine the Health System Costs of Using the 21-Gene Assay  Journal Articles
• Prostate Cancer Transcriptomic Regulation by the Interplay of Germline Risk Alleles, Somatic Mutations, and 3D Genomic Architecture  Journal Articles
• Protein-leucine ingestion activates a regenerative inflammo-myogenic transcriptome in skeletal muscle following intense endurance exercise  Journal Articles
• Quantitative biology of single neurons  Journal Articles
• RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions  Journal Articles
• Regulation of kynurenine biosynthesis during influenza virus infection  Journal Articles
• Resistance training in young men induces muscle transcriptome-wide changes associated with muscle structure and metabolism refining the response to exercise-induced stress  Journal Articles
• SINGLE-CELL TRANSCRIPTOME ANALYSIS IN HEALTH AND DISEASE  Journal Articles
• Sam68 Allows Selective Targeting of Human Cancer Stem Cells  Journal Articles
• Sexual dimorphism and heightened conditional expression in a sexually selected weapon in the Asian rhinoceros beetle  Journal Articles
• Single Cell Technologies Define New Therapeutic Avenues for Huntington’s Disease  Journal Articles
• Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity  Journal Articles
• Single-cell transcriptomic analysis of neuroepithelial cells and other cell types of the gills of zebrafish (Danio rerio) exposed to hypoxia  Journal Articles
• Somatic transcriptome priming gates lineage-specific differentiation potential of human-induced pluripotent stem cell states  Journal Articles
• Spinal Myxopapillary Ependymomas Demonstrate a Warburg Phenotype  Journal Articles
• Structural Insights into the Regulation of Foreign Genes in Salmonella by the Hha/H-NS Complex  Journal Articles
• Structure–Function Relationships of Human Milk Oligosaccharides on the Intestinal Epithelial Transcriptome in Caco‐2 Cells and a Murine Model of Necrotizing Enterocolitis  Journal Articles
• Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish  Journal Articles
• The CARM1 transcriptome and arginine methylproteome mediate skeletal muscle integrative biology  Journal Articles
• The Overlap of Lung Tissue Transcriptome of Smoke Exposed Mice with Human Smoking and COPD  Journal Articles
• The effects of lymph node status on predicting outcome in ER+ /HER2- tamoxifen treated breast cancer patients using gene signatures  Journal Articles
• The genetics of human personality  Journal Articles
• The proteomic landscape of glioblastoma recurrence reveals novel and targetable immunoregulatory drivers  Journal Articles
• The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development  Journal Articles
• Trans-ethnic association study of blood pressure determinants in over 750,000 individuals  Journal Articles
• Transcriptional profiling of primary endometrial epithelial cells following acute HIV‐1 exposure reveals gene signatures related to innate immunity  Journal Articles
• Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers  Journal Articles
• Transcriptional response of vaginal epithelial cells to medroxyprogesterone acetate treatment results in decreased barrier integrity  Journal Articles
• Transcriptome and translational signaling following endurance exercise in trained skeletal muscle: impact of dietary protein  Journal Articles
• Transcriptome data reveal conserved patterns of fruiting body development and response to heat stress in the mushroom-forming fungus Flammulina filiformis  Journal Articles
• Transcriptomic Response in the Spleen after Whole-Body Low-Dose X-Ray Irradiation  Journal Articles
• Transcriptomic analysis of the Malpighian tubules of Trichoplusia ni: Clues to mechanisms for switching from ion secretion to ion reabsorption in the distal ileac plexus  Journal Articles
• Transcriptomic and barrier responses of human airway epithelial cells exposed to cannabis smoke  Journal Articles
• Transcriptomic and functional analyses of 3D placental extravillous trophoblast spheroids  Journal Articles
• Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity  Journal Articles
• Transcriptomic links to muscle mass loss and declines in cumulative muscle protein synthesis during short‐term disuse in healthy younger humans  Journal Articles
• Transcriptomic profiling of gamma ray induced mutants from the CGL1 human hybrid cell system reveals novel insights into the mechanisms of radiation-induced carcinogenesis  Journal Articles
• Transcriptomics profiling and steroid production in mummichog (Fundulus heteroclitus) testes after treatment with 5α-dihydrotestosterone  Journal Articles
• Twenty years of transcriptomics, 17alpha-ethinylestradiol, and fish  Journal Articles
• Two-way learning with one-way supervision for gene expression data  Journal Articles