Brian Golding - McMaster Experts

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Faculty of Science, McMaster University
Member, Origins Institute, Faculty of Science
Professor, Biology, Faculty of Science

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selected scholarly activity

chapters
- Rapid evolution of low complexity sequences and single amino acid repeats across eukaryotes. 55-63. 2012
- Patterns of Horizontal Gene Transfer in Bacteria. 49-59. 2010
- Poster Summaries. Current plant science and biotechnology in agriculture. 225-250. 2005
- Population biology and bioinformatics. 94-103. 2004
- Sequencing the 1700 kb pExo Megaplasmid of Sinorhizobium meliloti. In vivo Cloning of 60-240 Kb Fragments. Current plant science and biotechnology in agriculture. 289-289. 2002
- The 1683 kb replicon of Sinorhizobium meliloti : past and present investigations into the nature of a very large bacterial plasmid.. 41-45. 2002
- Cloning Defined Regions of the pExo Megaplasmid of Rhizobium (Sinorhizobium) Meliloti. 177-179. 1999
- The Effect of Purifying Selection on Genealogies. 271-285. 1997
conferences
- Local adaptation in the extremophile Eutrema salsugineum: Exploring the role of putative lncRNAs. In Vitro Cellular and Developmental Biology - Plant. S10-S11. 2018
- Ribosomal DNA and plastid markers used to sample fungal and plant communities from wetland soils reveal complementary biotas. Genome. 267-267. 2015
- A draft genome of Yersinia pestis from victims of the Black Death. American Journal of Physical Anthropology. 103-104. 2012
- Abstract 5780: Development of potent inhibitors of the DNA-dependent protein kinase (DNA-PK). Cancer Research. 5780-5780. 2010
- Functional Analysis of Genes of Unknown Functions in Sinorhizobium meliloti 1021. Current plant science and biotechnology in agriculture. 115-118. 2005
- The roles of arg-tRNA and minCDE on megaplasmid pSymB in Sinorhizobium meliloti 1021. Current plant science and biotechnology in agriculture. 242-242. 2005
- Interspecific comparisons of 35 nuclear receptor superfamily members show the NROB subfamily to be permissive for sequence variability.. American Journal of Human Genetics. 349-349. 2001
- DAX1/SHP family of the nuclear hormone receptor superfamily appears predisposed to sequence variability.. American Journal of Human Genetics. 177-177. 2000
- ESTIMATING SELECTION COEFFICIENTS FROM THE PHYLOGENETIC HISTORY. MECHANISMS OF MOLECULAR EVOLUTION. 61-78. 1993
- NONRANDOM SEQUENCE CHANGES TYPIFY BOTH SPONTANEOUS MUTATIONS AND EVOLUTIONARY SUBSTITUTIONS. MODELLING AND COMPUTER METHODS IN MOLECULAR BIOLOGY AND GENETICS. 431-444. 1992
- THE USE OF IDENTITY COEFFICIENTS TO CALCULATE THE VARIANCE OF HOMOZYGOSITY. Genome. 664-664. 1980
- LINKAGE DISEQUILIBRIA IN A FINITE POPULATION WITH CERTAIN GENETIC SYSTEMS OF MATING. Genetics. S125-S125. 1979
- EFFECT OF INTRAGENIC RECOMBINATIONS ON HETEROZYGOSITY IN FINITE POPULATIONS. Genome. 444-444. 1978
- COMPUTER STUDY OF EFFECTS OF ELECTROPHORETIC COMBINATIONS OF ALLELES ON OBSERVED LEVELS OF LINKAGE DISEQUILIBRIUM. Genome. 561-561. 1976
journal articles
- Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source. Microbiology spectrum. 12:e0358423. 2024
- Evolution of Transcript Abundance is Influenced by Indels in Protein Low Complexity Regions. Journal of Molecular Evolution. 92:153-168. 2024
- Scoring alignments by embedding vector similarity. Briefings in Bioinformatics. 25:bbae178. 2024
- Seq-InSite: sequence supersedes structure for protein interaction site prediction. Bioinformatics. 40:btad738. 2024
- A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade. PLoS Pathogens. 19:e1011538-e1011538. 2023
- Decision Tree Ensembles Utilizing Multivariate Splits Are Effective at Investigating Beta Diversity in Medically Relevant 16S Amplicon Sequencing Data. Microbiology spectrum. 11:e0206522. 2023
- Low Complexity Regions in Proteins and DNA are Poorly Correlated. Molecular Biology and Evolution (MBE). 40:msad084. 2023
- Emergence, continuity, and evolution of Yersinia pestis throughout medieval and early modern Denmark. Current Biology. 33:1147-1152.e5. 2023
- Computing Maximal Covers for Protein Sequences. Journal of Computational Biology. 30:149-160. 2023
- Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis. Communications Biology. 6:23. 2023
- Examining pathogen DNA recovery across the remains of a 14th century Italian friar (Blessed Sante) infected with Brucella melitensis. International Journal of Paleopathology. 39:20-34. 2022
- LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data. BMC Bioinformatics. 23:110. 2022
- Evolution of immune genes is associated with the Black Death. Nature. 611:312-319. 2022
- Probe design for simultaneous, targeted capture of diverse metagenomic targets. Cell Reports Methods. 2:100246-100246. 2022
- A 16th century Escherichia coli draft genome associated with an opportunistic bile infection. Communications Biology. 5:599. 2022
- Low Complexity Regions in Mammalian Proteins are Associated with Low Protein Abundance and High Transcript Abundance. Molecular Biology and Evolution (MBE). 39:msac087. 2022
- Genomic inversions in Escherichia coli alter gene expression and are associated with nucleoid protein binding sites. Genome. 65:287-299. 2022
- Decision Tree Ensembles Utilizing Multivariate Splits Are Effective at Investigating Beta-Diversity in Medically Relevant 16S Amplicon Sequencing Data 2022
- Resampling the pool of genotypic possibilities: an adaptive function of sexual reproduction. BMC Ecology and Evolution. 21:119. 2021
- Probe design for simultaneous, targeted capture of diverse metagenomic targets. Cell Reports Methods. 1:100069-100069. 2021
- DELPHI: accurate deep ensemble model for protein interaction sites prediction. Bioinformatics. 37:896-904. 2021
- The Location of Substitutions and Bacterial Genome Arrangements. Genome Biology and Evolution. 13:evaa260. 2021
- Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress. BMC Genomics. 21:396. 2020
- The origins and genomic diversity of American Civil War Era smallpox vaccine strains. Genome Biology. 21:175. 2020
- American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations. Nature Communications. 11:4048. 2020
- Spatial Patterns of Gene Expression in Bacterial Genomes. Journal of Molecular Evolution. 88:510-520. 2020
- The role of introgression and ecotypic parallelism in delineating intraspecific conservation units. Molecular Ecology. 29:2793-2809. 2020
- Positive Selection of a Serine Residue in Bat IRF3 Confers Enhanced Antiviral Protection. iScience. 23:100958-100958. 2020
- Correction: Sex solves Haldane’s dilemma. Genome. 63:131-131. 2020
- Sex solves Haldane’s dilemma. Genome. 62:761-768. 2019
- Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships. G3: Genes, Genomes, Genetics. 9:2511-2520. 2019
- The Caribou (Rangifer tarandus) Genome. Genes. 10:540-540. 2019
- Genetic resiliency and the Black Death: No apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark. American Journal of Physical Anthropology. 169:240-252. 2019
- Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus). Journal of Evolutionary Biology. 31:1945-1958. 2018
- Prediction of plant lncRNA by ensemble machine learning classifiers. BMC Genomics. 19:316. 2018
- Parallel evolution of site‐specific changes in divergent caribou lineages. Ecology and Evolution. 8:6053-6064. 2018
- Inter-replicon Gene Flow Contributes to Transcriptional Integration in the Sinorhizobium meliloti Multipartite Genome. G3: Genes, Genomes, Genetics. 8:1711-1720. 2018
- The advantage of recombination when selection is acting at many genetic Loci. Journal of Theoretical Biology. 442:123-128. 2018
- Human-Specific Mutations and Positively Selected Sites in MARCO Confer Functional Changes. Molecular Biology and Evolution (MBE). 35:440-450. 2018
- Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada. Current Biology. 27:3149-3156.e11. 2017
- Evolution of the Largest Mammalian Genome. Genome Biology and Evolution. 9:1711-1724. 2017
- Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens. Water Research. 115:360-369. 2017
- A molecular portrait of maternal sepsis from Byzantine Troy. eLife. 6:e20983. 2017
- 17th Century Variola Virus Reveals the Recent History of Smallpox. Current Biology. 26:3407-3412. 2016
- Estimation of Gene Insertion/Deletion Rates with Missing Data. Genetics. 204:513-529. 2016
- A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring. Philosophical Transactions of the Royal Society of London. Biological Sciences. 371:20150330-20150330. 2016
- Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife. 5:e12994. 2016
- Mammuthus Population Dynamics in Late Pleistocene North America: Divergence, Phylogeography, and Introgression. Frontiers in Ecology and Evolution. 4. 2016
- Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas. PLoS ONE. 11:e0142759-e0142759. 2016
- markophylo: Markov chain analysis on phylogenetic trees. Bioinformatics. 32:130-132. 2016
- Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform. Scientific Reports. 5:9687. 2015
- FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures. Bioinformatics. 31:523-531. 2015
- The Evolution of the Scavenger Receptor Cysteine-Rich Domain of the Class A Scavenger Receptors. Frontiers in Immunology. 6:342. 2015
- Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction. PLoS Genetics. 10:e1004742-e1004742. 2014
- Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier. Molecular Ecology Resources. 14:929-942. 2014
- Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis. The Lancet Infectious Diseases. 14:319-326. 2014
- Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins. Genome Biology and Evolution. 6:655-665. 2014
- Second-Pandemic Strain ofVibrio choleraefrom the Philadelphia Cholera Outbreak of 1849. New England Journal of Medicine. 370:334-340. 2014
- Investigation of Intercellular Salicylic Acid Accumulation during Compatible and Incompatible Arabidopsis-Pseudomonas syringae Interactions Using a Fast Neutron-Generated Mutant Allele of EDS5 Identified by Genetic Mapping and Whole-Genome Sequencing. PLoS ONE. 9:e88608-e88608. 2014
- Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures. PLoS Computational Biology. 10:e1003429-e1003429. 2014
- A Guide to Bioinformatics for Immunologists. Frontiers in Immunology. 4:416. 2013
- BOND: Basic OligoNucleotide Design. BMC Bioinformatics. 14:69. 2013
- RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions. BMC Genomics. 14:578. 2013
- Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small‐scale reproducibility. Molecular Ecology Resources. 13:798-810. 2013
- The evolution of the class A scavenger receptors. BMC Ecology and Evolution. 12:227. 2012
- Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity. BMC Plant Biology. 12:175. 2012
- The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach. Molecular Phylogenetics and Evolution. 65:765-773. 2012
- Inferring sequence regions under functional divergence in duplicate genes. Bioinformatics. 28:176-183. 2012
- Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error. PLoS ONE. 7:e35749-e35749. 2012
- Potent enantioselective inhibition of DNA-dependent protein kinase (DNA-PK) by atropisomeric chromenone derivatives. Organic and Biomolecular Chemistry. 10:6747-6747. 2012
- Erratum: A draft genome of Yersinia pestis from victims of the Black Death. Nature. 480:278-278. 2011
- Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?. New Phytologist. 192:775-782. 2011
- A draft genome of Yersinia pestis from victims of the Black Death. Nature. 478:506-510. 2011
- Antibiotic resistance is ancient. Nature. 477:457-461. 2011
- The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti. Microbiology (United Kingdom). 157:2522-2533. 2011
- “Patchy-Tachy” Leads to False Positives for Recombination. Molecular Biology and Evolution (MBE). 28:2549-2559. 2011
- Increased Polymorphism Near Low-Complexity Sequences across the Genomes of Plasmodium falciparum Isolates. Genome Biology and Evolution. 3:539-550. 2011
- Pervasive Cryptic Epistasis in Molecular Evolution. PLoS Genetics. 6:e1001162-e1001162. 2010
- Low-complexity sequences and single amino acid repeats: not just “junk” peptide sequences. Genome. 53:753-762. 2010
- Inferring Bacterial Genome Flux While Considering Truncated Genes. Genetics. 186:411-426. 2010
- Assigning sequences to species in the absence of large interspecific differences. Molecular Phylogenetics and Evolution. 56:187-194. 2010
- Genome-wide evidence for selection acting on single amino acid repeats. Genome Research. 20:755-760. 2010
- Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?. Genetics. 182:1365-1375. 2009
- Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?. Genetics. 182:1365-1375. 2009
- Preface. Molecular Ecology Resources. 9:iv-vi. 2009
- Similar Selective Factors Affect Both between-Gene and between-Exon Divergence in Drosophila. Molecular Biology and Evolution (MBE). 26:859-866. 2009
- Nucleotide Substitution Bias within the Genus Drosophila Affects the Pattern of Proteome Evolution. Genome Biology and Evolution. 1:288-293. 2009
- Uncorrected Nucleotide Bias in mtDNA Can Mimic the Effects of Positive Darwinian Selection. Molecular Biology and Evolution (MBE). 25:2521-2524. 2008
- High rates of lateral gene transfer are not due to false diagnosis of gene absence. Gene. 421:27-31. 2008
- Gene amelioration demonstrated: the journey of nascent genes in bacteria. Genome. 51:164-168. 2008
- Uncovering rate variation of lateral gene transfer during bacterial genome evolution. BMC Genomics. 9:235-235. 2008
- Uncovering rate variation of lateral gene transfer during bacterial genome evolution. BMC Genomics. 9:556-556. 2008
- The role of laterally transferred genes in adaptive evolution. BMC Ecology and Evolution. 7:S8. 2007
- fingerprint: visual depiction of variation in multiple sequence alignments. Molecular Ecology Resources. 7:908-914. 2007
- Efficient Algorithms for Counting and Reporting Segregating Sites in Genomic Sequences. Journal of Computational Biology. 14:1001-1010. 2007
- A Step Toward Barcoding Life: A Model-Based, Decision-Theoretic Method to Assign Genes to Preexisting Species Groups. Systematic Biology. 56:44-56. 2007
- Identification of Conflicting Selective Effects on Highly Expressed Genes. Evolutionary Bioinformatics. 3:117693430700300-117693430700300. 2007
- Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?. Molecular Biology and Evolution (MBE). 23:2379-2391. 2006
- Gene gain and gene loss in Streptococcus:: Is it driven by habitat?. Molecular Biology and Evolution (MBE). 23:2379-2391. 2006
- An Integrated Approach to Functional Genomics: Construction of a Novel Reporter Gene Fusion Library forSinorhizobium meliloti. Applied and Environmental Microbiology. 72:7156-7167. 2006
- Comparative genomics of metabolic pathways inMycobacteriumspecies: gene duplication, gene decay and lateral gene transfer. FEMS Microbiology Reviews. 30:906-925. 2006
- Selection and Slippage Creating Serine Homopolymers. Molecular Biology and Evolution (MBE). 23:2017-2025. 2006
- Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis. Canadian Journal of Microbiology. 52:560-569. 2006
- The fate of laterally transferred genes: Life in the fast lane to adaptation or death. Genome Research. 16:636-643. 2006
- Transcriptional Profiling Implicates Novel Interactions between Abiotic Stress and Hormonal Responses in Thellungiella, a Close Relative of Arabidopsis . Plant Physiology. 140:1437-1450. 2006
- Asymmetrical Evolution of Cytochrome bd Subunits. Journal of Molecular Evolution. 62:132-142. 2006
- Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap. Plant Molecular Biology. 58:561-574. 2005
- Problems with Co-Funding in Canada. Science. 308:1867-1867. 2005
- Simple sequence in brain and nervous system specific proteins. Genome. 48:291-301. 2005
- The Selective Cause of an Ancient Adaptation. Science. 307:1279-1282. 2005
- Patterns of Bacterial Gene Movement. Molecular Biology and Evolution (MBE). 21:1294-1307. 2004
- Neurological Proteins Are Not Enriched For Repetitive Sequences. Genetics. 166:1141-1154. 2004
- A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan Tetrahymena thermophila. Clinical and Vaccine Immunology. 3:157-169. 2004
- DNA and the revolutions of molecular evolution, computational biology, and bioinformatics. Genome. 46:930-935. 2003
- A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history. Canadian Journal of Microbiology. 49:269-280. 2003
- Dinucleotide compositional analysis of Sinorhizobium meliloti using the genome signature: distinguishing chromosomes and plasmids. Functional and Integrative Genomics. 2:274-281. 2002
- The Pattern of Amino Acid Replacements in α/β-Barrels. Molecular Biology and Evolution (MBE). 19:1846-1864. 2002
- Simple sequences are rare in the Protein Data Bank. Proteins: Structure, Function and Bioinformatics. 48:134-140. 2002
- Reconstructing the Prior Probabilities of Allelic Phylogenies. Genetics. 161:889-896. 2002
- The complete sequence of the 1,683-kb pSymB megaplasmid from the N ₂ -fixing endosymbiont Sinorhizobium meliloti. Proceedings of the National Academy of Sciences of the United States of America. 98:9889-9894. 2001
- The Composite Genome of the Legume Symbiont Sinorhizobium meliloti. Science. 293:668-672. 2001
- The Closest BLAST Hit Is Often Not the Nearest Neighbor. Journal of Molecular Evolution. 52:540-542. 2001
- Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes. Molecular Biology and Evolution (MBE). 18:404-412. 2001
- oriT -Directed Cloning of Defined Large Regions from Bacterial Genomes: Identification of the Sinorhizobium meliloti pExo Megaplasmid Replicator Region. Journal of Bacteriology. 182:5486-5494. 2000
- Evolution of Simple Sequence in Proteins. Journal of Molecular Evolution. 51:131-140. 2000
- Enzyme Evolution Explained (Sort Of). Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 6-17. 1999
- A Genomics Approach to Mitochondrial Evolution. Biological Bulletin. 196:400-403. 1999
- Simple sequence is abundant in eukaryotic proteins. Protein Science. 8:1358-1361. 1999
- The mosaic nature of the eukaryotic nucleus. Molecular Biology and Evolution (MBE). 15:779-788. 1998
- The structural basis of molecular adaptation. Molecular Biology and Evolution (MBE). 15:355-369. 1998
- Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Research (NAR). 26:865-878. 1998
- Searching for Substitution Rate Heterogeneity. Molecular Phylogenetics and Evolution. 9:64-71. 1998
- Phylogenetic analysis of the caliciviruses. Journal of Medical Virology. 52:419-424. 1997
- An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature. 387:493-497. 1997
- Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase. Proceedings of the National Academy of Sciences of the United States of America. 94:3104-3109. 1997
- Substitution rate variation in closely related rodent species. Heredity. 78:21-31. 1997
- Partial characterization of the genome of nine animal caliciviruses. Archives of Virology. 141:2443-2456. 1996
- A chimeric origin for eukaryotes re-examined - Reply. Trends in Biochemical Sciences. 21:372-372. 1996
- Evolutionary rate variation withinMus APRT. Genome. 39:909-913. 1996
- Reply. Trends in Biochemical Sciences. 21:372-372. 1996
- Evolution: When was life's first branch point?. Current Biology. 6:679-682. 1996
- The origin of the eukaryotic cell. Trends in Biochemical Sciences. 21:166-171. 1996
- The origin of the eukaryotic cell. Trends in Biochemical Sciences. 21:166-171. 1996
- EVIDENCE FOR INTRON CAPTURE - AN UNUSUAL PATH FOR THE EVOLUTION OF PROTEINS (VOL 91, PG 7506, 1994). Proceedings of the National Academy of Sciences of the United States of America. 92:646-646. 1995
- Evidence for intron capture: an unusual path for the evolution of proteins.. Proceedings of the National Academy of Sciences of the United States of America. 92:646-646. 1995
- Protein-based phylogenies support a chimeric origin for the eukaryotic genome.. Molecular Biology and Evolution (MBE). 12:1-6. 1995
- HSP70 phylogeny and the relationship between archaebacteria, eubacteria, and eukaryotes. Journal of Molecular Evolution. 39:537-540. 1994
- Evidence for intron capture: an unusual path for the evolution of proteins.. Proceedings of the National Academy of Sciences of the United States of America. 91:7506-7509. 1994
- Exploratory analysis of multiple sequence alignments using phylogenies. Bioinformatics. 10:243-247. 1994
- Evolution of Allosteric Control in Glycogen Phosphorylase. Journal of Molecular Biology. 234:700-721. 1993
- Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes. Journal of Molecular Evolution. 37:573-582. 1993
- The rat adenine phosphoribosyltransferase sequence shows evolutionary rate variation among exons in rodents. Genome. 36:1107-1110. 1993
- MAXIMUM-LIKELIHOOD ESTIMATES OF SELECTION COEFFICIENTS FROM DNA SEQUENCE DATA. Evolution. 47:1420-1431. 1993
- Maximum-Likelihood Estimates of Selection Coefficients from DNA Sequence Data. Evolution. 47:1420-1420. 1993
- A phylogenetic analysis based on the gene encoding phosphoglycerate kinase.. Journal of Molecular Evolution. 35:466. 1992
- A phylogenetic analysis based on the gene encoding phosphoglycerate kinase. Journal of Molecular Evolution. 34:383-395. 1992
- The prospects for polymorphisms shared between species. Heredity. 68:263-276. 1992
- A source of small repeats in genomic DNA.. Genetics. 129:563-572. 1991
- A maximum likelihood approach to the detection of selection from a phylogeny. Journal of Molecular Evolution. 31:511-523. 1990
- Homozygosity of selected alleles in subdivided populations. Theoretical Population Biology. 36:59-76. 1989
- Studies on the expression and evolution of the glycogen phosphorylase gene family in the rat. Genome. 30:582-590. 1988
- A sampling theory of selectively neutral alleles in a subdivided population.. Genetics. 119:721-729. 1988
- Somatic immunoglobulin sequence divergence and its implications for studies of evolutionary divergence. Genome. 30:341-346. 1988
- Multiple substitutions create biased estimates of divergence times and small increases in the variance to mean ratio. Heredity. 58:331-339. 1987
- The detection of deleterious selection using ancestors inferred from a phylogenetic history. Genetical Research. 49:71-82. 1987
- Patterns of Somatic Mutations in Immunoglobulin Variable Genes. Genetics. 115:169-176. 1987
- Evidence for local DNA influences on patterns of substitutions in the human α-interferon gene family. Genome. 28:483-496. 1986
- Sequence evolution within populations under multiple types of mutation.. Proceedings of the National Academy of Sciences of the United States of America. 83:427-431. 1986
- Sequence-directed mutagenesis: evidence from a phylogenetic history of human alpha-interferon genes.. Proceedings of the National Academy of Sciences of the United States of America. 82:8577-8581. 1985
- Variance of sequence divergence.. Molecular Biology and Evolution (MBE). 1:439-441. 1984
- THE SAMPLING DISTRIBUTION OF LINKAGE DISEQUILIBRIUM. Genetics. 108:257-274. 1984
- Estimates of DNA and protein sequence divergence: an examination of some assumptions.. Molecular Biology and Evolution (MBE). 1:125-142. 1984
- Two-locus, fourth-order gene frequency moments: Implications for the variance of squared linkage disequilibrium and the variance of homozygosity. Theoretical Population Biology. 24:173-191. 1983
- VARIANCE AND COVARIANCE OF HOMOZYGOSITY IN A STRUCTURED POPULATION. Genetics. 104:513-529. 1983
- The variance of linkage disequilibrium between three loci in a finite population. Genome. 25:139-145. 1983
- INCREASED NUMBER OF ALLELES FOUND IN HYBRID POPULATIONS DUE TO INTRAGENIC RECOMBINATION. Evolution. 37:17-29. 1983
- Increased Number of Alleles Found in Hybrid Populations Due to Intragenic Recombination. Evolution. 37:17-17. 1983
- Expected frequencies of codon use as a function of mutation rates and codon fitnesses. Journal of Molecular Evolution. 18:379-386. 1982
- The distribution of nucleotide site differences between two finite sequences. Theoretical Population Biology. 22:96-107. 1982
- CORRIGENDUM. Genetics. 95:503-503. 1980
- LINKAGE DISEQUILIBRIUM IN A FINITE POPULATION THAT IS PARTIALLY SELFING. Genetics. 94:777-789. 1980
- THE EFFECT OF COMBINING ALLELES INTO ELECTROPHORETIC CLASSES ON DETECTING LINKAGE DISEQUILIBRIUM. Genetics. 85:543-556. 1977
- Correction: Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error. PLoS ONE. 7:10.1371/annotation/188edbe7-9f2e-4031-9155-d4a9337e6257.
- Correction: Pervasive Cryptic Epistasis in Molecular Evolution. PLoS Genetics. 6:10.1371/annotation/d618ce28-5010-47df-a44e-148ecdc0fef6.
preprints
reports
- Population size, growth rate and other studies of crayfish in southern Ontario 1976