Thermodynamics Concept

subject area of

• A Quantitative Scale for the Extent of Conjugation of the Amide Bond. Amidity Percentage as a Chemical Driving Force  Journal Articles
• A Thermodynamic Basis for Prebiotic Amino Acid Synthesis and the Nature of the First Genetic Code  Journal Articles
• A kinetic and equilibrium study of the denaturation of aspartic proteinases from the fungi, Endothia parasitica and Mucor miehei  Journal Articles
• A parameterized, continuum electrostatic model for predicting protein pK_a values  Journal Articles
• A study of the interactions that stabilize DNA frayed wires  Journal Articles
• A thermodynamic study of albumin adsorption onto some solid surfaces.  Journal Articles
• Acid-induced fusion of liposomes: studies with 2,3-seco-5α-cholestan-2,3-dioic acid  Journal Articles
• Adsorption of thrombin from buffer and modified plasma to polystyrene resins containing sulphonate and sulphamide arginyl methyl ester groups  Journal Articles
• Advances in the Detection of As in Environmental Samples Using Low Energy X-ray Fluorescence in a Scanning Transmission X-ray Microscope: Arsenic Immobilization by an Fe(II)-Oxidizing Freshwater Bacteria  Journal Articles
• Allosteric Sensing of Fatty Acid Binding by NMR: Application to Human Serum Albumin  Journal Articles
• Allosteric linkers in cAMP signalling  Journal Articles
• Analysis of an allosteric binding site: the nucleoside inhibitor site of phosphorylase a  Journal Articles
• Analysis of the pi-pi stacking interactions between the aminoglycoside antibiotic kinase APH(3')-IIIa and its nucleotide ligands  Journal Articles
• Assessing the Amount of Quadruplex Structures Present within G2-Tract Synthetic Random-Sequence DNA Libraries  Journal Articles
• Basic optothermal diffusion theory for interstitial laser photocoagulation  Journal Articles
• Benchmarking pKa prediction methods for Lys115 in acetoacetate decarboxylase  Journal Articles
• Catalytic Mechanism of Enterococcal Kanamycin Kinase (APH(3‘)-IIIa):  Viscosity, Thio, and Solvent Isotope Effects Support a Theorell−Chance Mechanism  Journal Articles
• Changes in lipid fluidity and fatty acid composition with altered culture temperature in Tetrahymen a pyriformis-NT1  Journal Articles
• Characterization of a new cancer-associated mutant of p53 with a missense mutation (K351N) in the tetramerization domain  Journal Articles
• Chloride Channels of Glycine and GABA Receptors with Blockers: Monte Carlo Minimization and Structure-Activity Relationships  Journal Articles
• Conformation of a tethered polymer in a leaky nanocavity  Journal Articles
• Conformation transitions of a polyelectrolyte chain: A replica-exchange Monte-Carlo study  Journal Articles
• Cooperativity of papain-substrate interaction energies in the S2 to S2' subsites  Journal Articles
• Critical swelling in single phospholipid bilayers  Journal Articles
• Cyclopolymerization Reactions of Diallyl Monomers: Exploring Electronic and Steric Effects Using DFT Reactivity Indices  Journal Articles
• Dendrimer-Mediated Molecular Sieving on Avidin.  Journal Articles
• Direct analysis of polyols using 3-nitrophenylboronic acid in capillary electrophoresis: thermodynamic and electrokinetic principles of molecular recognition  Journal Articles
• Discrimination of native protein structures using atom–atom contact scoring  Journal Articles
• Dynamics of the Fragment of Thrombomodulin Containing the Fourth and Fifth Epidermal Growth Factor-like Domains Correlate with Function  Journal Articles
• Editorial  Journal Articles
• Editorial  Journal Articles
• Effect of combined high pressure and mild heat on carrot pectinmethylesterase activity.  Journal Articles
• Effects of metal binding affinity on the chemical and thermal stability of site-directed mutants of rat oncomodulin  Journal Articles
• Elastic properties and line tension of self-assembled bilayer membranes  Journal Articles
• Electron Transfer between Cytochromes c from Horse and Pseudomonas  Journal Articles
• Energy-Dependent Disassembly of Self-Assembled SNARE Complex:  Observation at Nanometer Resolution Using Atomic Force Microscopy  Journal Articles
• Energy‐Dissipating Polymeric Silicone Surfactants  Journal Articles
• Enhanced binding and conformational selectivity in affinity capillary electrophoresis using a water‐soluble resorcin[4]arene as intrinsic buffer and electrokinetic host  Journal Articles
• Enhancement of soil retention for phenanthrene in binary cationic gemini and nonionic surfactant mixtures: Characterizing two-step adsorption and partition processes through experimental and modeling approaches  Journal Articles
• Establishing the Principles of Recognition in the Adenine-Binding Region of an Aminoglycoside Antibiotic Kinase [APH(3‘)-IIIa]  Journal Articles
• Evolution of protein interfaces in multimers and fibrils  Journal Articles
• Flexibility of “Polyunsaturated Fatty Acid Chains” and Peptide Backbones:  A Comparative ab Initio Study  Journal Articles
• Fluctuation domains in adaptive evolution  Journal Articles
• Folding thermodynamics of the hybrid‐1 type intramolecular human telomeric G‐quadruplex  Journal Articles
• Formation Energies of Antiphase Boundaries in GaAs and GaP: An ab Initio Study  Journal Articles
• G-protein linked melatonin binding sites in the chicken lung  Journal Articles
• GCN4 enhances the stability of the pore domain of potassium channel KcsA  Journal Articles
• Gauging a Hydrocarbon Ruler by an Intrinsic Exciton Probe  Journal Articles
• Giant surfactants provide a versatile platform for sub-10-nm nanostructure engineering  Journal Articles
• High-throughput screening of holoprotein conformational stability by dynamic ligand exchange-affinity capillary electrophoresis  Journal Articles
• Identification of a conserved 8 aa insert in the PIP5K protein in the Saccharomycetaceae family of fungi and the molecular dynamics simulations and structural analysis to investigate its potential functional role  Journal Articles
• Impact of confinement on proteins concentrated in lithocholic acid based organic nanotubes  Journal Articles
• Implications of Protonation and Substituent Effects for C−O and O−P Bond Cleavage in Phosphate Monoesters  Journal Articles
• Induction of Flexibility through Protein-Protein Interactions  Journal Articles
• Intracellular ion activities in Malpighian tubule cells ofRhodnius prolixus: evaluation of Na+-K+-2Cl-cotransport across the basolateral membrane  Journal Articles
• Ion Solvation in Liquid Mixtures: Effects of Solvent Reorganization  Journal Articles
• Is a calorie a calorie?  Journal Articles
• Kinetic mechanism of the GCN5-related chromosomal aminoglycoside acetyltransferase AAC(6')-Ii from Enterococcus faecium: evidence of dimer subunit cooperativity  Journal Articles
• Label-Free Assay for Thermodynamic Analysis of Protein−Ligand Interactions: A Multivariate Strategy for Allosteric Ligand Screening  Journal Articles
• Linear Free Energy Relationship Analysis of Transition State Mimicry by 3-Deoxy-d-arabino-heptulosonate-7-phosphate (DAHP) Oxime, a DAHP Synthase Inhibitor and Phosphate Mimic  Journal Articles
• Local Structural Preferences and Dynamics Restrictions in the Urea-Denatured State of SUMO-1: NMR Characterization  Journal Articles
• Low molecular weight silicones particularly facilitate human serum albumin denaturation  Journal Articles
• Mapping of Steroids Binding to 17β-Hydroxysteroid Dehydrogenase Type 1 Using Monte Carlo Energy Minimization Reveals Alternative Binding Modes  Journal Articles
• Mechanisms of Specific versus Nonspecific Interactions of Aggregation-Prone Inhibitors and Attenuators  Journal Articles
• Meteorites and the RNA World: A Thermodynamic Model of Nucleobase Synthesis within Planetesimals  Journal Articles
• Microbial Geoengineers  Journal Articles
• Microbial Reverse Electrodialysis Cells for Synergistically Enhanced Power Production  Journal Articles
• Modeling interactions between blocking and permeant cations in the NavMs channel  Journal Articles
• Molecular Dynamics of Fibrinogen Adsorption onto Graphene, but Not onto Poly(ethylene glycol) Surface, Increases Exposure of Recognition Sites That Trigger Immune Response  Journal Articles
• Mutual Protein-Ligand Conformational Selection Drives cGMP vs. cAMP Selectivity in Protein Kinase G  Journal Articles
• NMR Spectroscopic Evidence for the Intermediacy of XeF₃⁻ in XeF₂/F⁻ Exchange, Attempted Syntheses and Thermochemistry of XeF₃⁻ Salts, and Theoretical Studies of the XeF₃⁻ Anion  Journal Articles
• NMR methods to dissect the molecular mechanisms of disease-related mutations (DRMs): Understanding how DRMs remodel functional free energy landscapes  Journal Articles
• Nanosecond molecular relaxations in lipid bilayers studied by high energy-resolution neutron scattering andin situdiffraction  Journal Articles
• Nine questions on energy decomposition analysis  Journal Articles
• On the interaction of peptides with calcium ions as studied by matrix-assisted laser desorption/ionization Fourier transform mass spectrometry: Towards peptide fishing using metal ion baits  Journal Articles
• Orientation and Effects of Mastoparan X on Phospholipid Bicelles  Journal Articles
• Overexpression, Purification, and Crystallization of the DNA Binding and Dimerization Domains of the Epstein-Barr Virus Nuclear Antigen 1  Journal Articles
• Pd(OAc)₂-Catalyzed C–H Activation/C–O Cyclization: Mechanism, Role of Oxidant—Probed by Density Functional Theory  Journal Articles
• Penicillin's catalytic mechanism revealed by inelastic neutrons and quantum chemical theory  Journal Articles
• Performance of mesophilic anaerobic granules for removal of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) from aqueous solution  Journal Articles
• Potentialphilicity and potentialphobicity: Reactivity indicators for external potential changes from density functional reactivity theory  Journal Articles
• Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment  Journal Articles
• Probing the active site of YjeE: a vital Escherichia coli protein of unknown function  Journal Articles
• Protein misfolding in endoplasmic reticulum stress with applications to renal diseases  Journal Articles
• Protein-Protein Interaction in Purple Membrane  Journal Articles
• Quantitative Scale for the Extent of Conjugation of Carbonyl Groups: “Carbonylicity” Percentage as a Chemical Driving Force  Journal Articles
• Quantum Mechanics/Molecular Mechanics Restrained Electrostatic Potential Fitting  Journal Articles
• Quantum Mechanics/Molecular Mechanics Strategies for Docking Pose Refinement: Distinguishing between Binders and Decoys in CytochromecPeroxidase  Journal Articles
• RNA secondary structure: physical and computational aspects  Journal Articles
• Reconstitution of rabbit sarcoplasmic reticulum calcium ATPase in a series of phosphatidylcholines containing a saturated and an unsaturated chain: suggestion of an optimal lipid environment  Journal Articles
• Role of Dynamics in the Autoinhibition and Activation of the Hyperpolarization-activated Cyclic Nucleotide-modulated (HCN) Ion Channels  Journal Articles
• Similarity of Ca²⁺‐bound conformations of morphine and Met‐enkephalin: A computational study  Journal Articles
• Simultaneous pH and Temperature Measurements Using Pyranine as a Molecular Probe  Journal Articles
• Solution structure and dynamics of the outer membrane enzyme PagP by NMR  Journal Articles
• Specific 2-[125I]iodomelatonin binding sites in the duck adrenal gland  Journal Articles
• Stereochemical and dynamic aspects of genetic recombination.  Journal Articles
• Structural Basis for Cyclic-Nucleotide Selectivity and cGMP-Selective Activation of PKG I  Journal Articles
• Structural model of a synthetic Ca2+ channel with bound Ca2+ ions and dihydropyridine ligand  Journal Articles
• Structural studies on prolyl hydroxylase. Conformation from circular dichroism spectroscopy.  Journal Articles
• Substituent Effects on Dynamics at Conical Intersections: Cycloheptatrienes  Journal Articles
• Subunit interactions in aspartate transcarbamylase. The interaction between catalytic and regulatory subunits and the effect of ligands  Journal Articles
• Systemic Energy Management by Strategically Located Functional Components within Molecular Frameworks, Determined by Systems Chemistry  Journal Articles
• Tau protein binds single‐stranded DNA sequence specifically – the proof obtained in vitro with non‐equilibrium capillary electrophoresis of equilibrium mixtures  Journal Articles
• Temperature-dependent changes in the swimming behaviour of Tetrahymena pyriformis—NT1 and their interrelationships with electrophysiology and the state of membrane lipids  Journal Articles
• The Dissociation Chemistry of Ionized Methyl Carbamate and its Isomers Revisited: Theory and Experiment in Concert  Journal Articles
• The Influence of Ser-154, Cys-113, and the Phosphorylated Threonine Residue on the Catalytic Reaction Mechanism of Pin1  Journal Articles
• The Transferable Tail:  Fusion of the N-Terminal Acidic Extension of Heparin Cofactor II to α₁-Proteinase Inhibitor M358R Specifically Increases the Rate of Thrombin Inhibition  Journal Articles
• The effects of temperature upon the electrophysiological properties of Tetrahymena pyriformis—NT1  Journal Articles
• The integral membrane enzyme PagP alternates between two dynamically distinct states  Journal Articles
• The role of hydroxyproline in collagen folding: Conformational energy calculations on oligopeptides containing proline and hydroxyproline  Journal Articles
• The structure of the apo cAMP‐binding domain of HCN4 – a stepping stone toward understanding the cAMP‐dependent modulation of the hyperpolarization‐activated cyclic‐nucleotide‐gated ion channels  Journal Articles
• Theoretical study of interaction of winter flounder antifreeze protein with ice  Journal Articles
• Thermodynamic and NMR analysis of inhibitor binding to dihydrofolate reductase  Journal Articles
• Thermodynamic aspects of some radioassays.  Journal Articles
• Thermoplastic Starch Processing and Characteristics—A Review  Journal Articles
• Titrametric Characterization of pH-Induced Phase Transitions in Functionalized Microgels  Journal Articles
• Transition Path from Two Apposed Membranes to a Stalk Obtained by a Combination of Particle Simulations and String Method  Journal Articles
• Transition State Analysis of Acid-Catalyzed dAMP Hydrolysis  Journal Articles
• Translocational Status of ApoB in the Presence of an Inhibitor of Microsomal Triglyceride Transfer Protein  Journal Articles
• Transport of anionic azo dyes from aqueous solution to gemini surfactant-modified wheat bran: Synchrotron infrared, molecular interaction and adsorption studies  Journal Articles
• True Arrhenius Relationships of Human Lactate Dehydrogenase  Journal Articles
• True Arrhenius relationship of human lactate dehydrogenase.  Journal Articles
• Ultrasonic and Densimetric Characterization of the Association of Cyclic AMP with the cAMP-Binding Domain of the Exchange Protein EPAC1  Journal Articles
• Unfolding of Acrylodan-Labeled Human Serum Albumin Probed by Steady-State and Time-Resolved Fluorescence Methods  Journal Articles
• [Mechanism and Surface Fractal Characteristics for the Adsorption of p-nitrophenol on Water-quenched Blast Furnace Slag].  Journal Articles