Models, Genetic Concept

subject area of

• A BIOGEOGRAPHIC GENETIC APPROACH FOR TESTING THE ROLE OF REINFORCEMENT: THE CASE OFDROSOPHILA PSEUDOOBSCURAANDD. PERSIMILIS  Academic Article
• A Bayesian hierarchical model for improving measurement of 5mC and 5hmC levels: Toward revealing associations between phenotypes and methylation states  Academic Article
• A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods  Academic Article
• A FLEXIBLE NONPARAMETRIC APPROACH TO FIND CANDIDATE GENES ASSOCIATED WITH DISEASE IN MICROARRAY EXPERIMENTS  Academic Article
• A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan Tetrahymena thermophila  Academic Article
• A Population Genetics Model for Multiple Quantitative Traits Exhibiting Pleiotropy and Epistasis  Academic Article
• A Pseudo-EM Algorithm for Clustering Incomplete Longitudinal Data  Academic Article
• A Reanalysis of Protein Polymorphism in Drosophila Melanogaster, D. Simulans, D. Sechellia and D. Mauritiana: Effects of Population Size and Selection  Academic Article
• A Step Toward Barcoding Life: A Model-Based, Decision-Theoretic Method to Assign Genes to Preexisting Species Groups  Academic Article
• A Unified Model of Codon Reassignment in Alternative Genetic Codes  Academic Article
• A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code  Academic Article
• A method to estimate the contribution of regional genetic associations to complex traits from summary association statistics  Academic Article
• A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution  Academic Article
• A mixability theory for the role of sex in evolution  Academic Article
• A quantitative approach to detect and overcome PCR inhibition in ancient DNA extracts  Academic Article
• A robust method to estimate regional polygenic correlation under misspecified linkage disequilibrium structure  Academic Article
• A sampling theory of selectively neutral alleles in a subdivided population.  Academic Article
• A source of small repeats in genomic DNA.  Academic Article
• A theoretical study of random segregation of minicircles in trypanosomatids  Academic Article
• Adenoviral Vectors Expressing Lymphotactin and Interleukin 2 or Lymphotactin and Interleukin 12 Synergize to Facilitate Tumor Regression in Murine Breast Cancer Models  Academic Article
• Adenoviruses with nonidentical terminal sequences are viable  Academic Article
• An emerging role for Wnt and GSK3 signaling pathways in schizophrenia  Academic Article
• An evolutionary model for the insect vitellins  Academic Article
• An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models  Academic Article
• Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta)  Academic Article
• Antimicrobial resistance surveillance in the genomic age  Academic Article
• Association Between Levels of Coding Sequence Divergence and Gene Misregulation in Drosophila Male Hybrids  Academic Article
• Asymptotic rates of growth of the extinction probability of a mutant gene  Academic Article
• Autoregulation of the Drosophila disconnected Gene in the Developing Visual System  Academic Article
• Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution  Academic Article
• Binding Site Determinants for the LysR-Type Transcriptional Regulator PcaQ in the Legume Endosymbiont Sinorhizobium meliloti  Academic Article
• Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites  Academic Article
• Cancer phenomics: RET and PTEN as illustrative models  Academic Article
• Cellular and molecular architecture of hematopoietic stem cells and progenitors in genetic models of bone marrow failure  Academic Article
• Cleavage-dependent Ligation by the FLP Recombinase  Academic Article
• Clinical, enzymatic and molecular characterization of nine new patients with malonyl‐coenzyme A decarboxylase deficiency  Academic Article
• Co-operation between Polymerases and Nucleotide Synthetases in the RNA World  Academic Article
• Codon Usage and Selection on Proteins  Academic Article
• Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage  Academic Article
• Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus  Academic Article
• Comparing the performance of linear and nonlinear principal components in the context of high-dimensional genomic data integration  Academic Article
• Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability  Academic Article
• Compensatory neutral mutations and the evolution of RNA.  Academic Article
• Competence for collagenase gene expression by tissue fibroblasts requires activation of an interleukin 1 alpha autocrine loop.  Academic Article
• Concepts and techniques in molecular biology—An overview*  Academic Article
• Contribution of Large Region Joint Associations to Complex Traits Genetics  Academic Article
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Academic Article
• Cryptic Genetic Variation in Natural Populations: A Predictive Framework  Academic Article
• DHCR7 mutation carrier rates and prevalence of the RSH/Smith-Lemli-Opitz syndrome: Where are the patients?  Academic Article
• Deciphering and simulating models of radiation genotoxicity with CRISPR/Cas9 systems  Academic Article
• Decoding ‘Unnecessary Complexity’: A Law of Complexity and a Concept of Hidden Variation Behind “Missing Heritability” in Precision Medicine  Academic Article
• Development of a FLP/frt System for Generating Helper-Dependent Adenoviral Vectors  Academic Article
• Directionality in the evolution of influenza A haemagglutinin  Academic Article
• Discordance between Genetic Structure and Morphological, Ecological, and Physiological Adaptation in Lake Magadi Tilapia  Academic Article
• Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus)  Academic Article
• Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?  Academic Article
• Effects of colonization asymmetries on metapopulation persistence  Academic Article
• Enzyme Evolution Explained (Sort Of)  Academic Article
• Epigenetic Age and the Risk of Incident Atrial Fibrillation  Academic Article
• Epigenetic Regulation of Tumor Necrosis Factor Alpha  Academic Article
• Estimates of DNA and protein sequence divergence: an examination of some assumptions.  Academic Article
• Estimating Selection Pressures from Limited Comparative Data  Academic Article
• Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss  Academic Article
• Evaluation of the Disease Liability of CFTR Variants  Academic Article
• Evidence for Mitotic Recombination within the Basidia of a Hybrid Cross of Cryptococcus neoformans  Academic Article
• Evidence for canalization of Distal-less function in the leg of Drosophila melanogaster  Academic Article
• Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila  Academic Article
• Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia  Academic Article
• Evolution of RAG-1 in Polyploid Clawed Frogs  Academic Article
• Evolution of mitochondrial-encoded cytochrome oxidase subunits in endothermic fish: The importance of taxon-sampling in codon-based models  Academic Article
• Evolutionary Stability of Minimal Mutation Rates in an Evo-epidemiological Model  Academic Article
• Evolutionary affinity of billfishes (Xiphiidae and Istiophoridae) and flatfishes (Plueronectiformes): Independent and trans-subordinal origins of endothermy in teleost fishes  Academic Article
• Evolutionary implications of the relationship between genome size and body size in flatworms and copepods  Academic Article
• Expected frequencies of codon use as a function of mutation rates and codon fitnesses  Academic Article
• Factors responsible for target site selection in Tn10 transposition: a role for the DDE motif in target DNA capture  Academic Article
• Faà di Bruno’s formula and the distributions of random partitions in population genetics and physics  Conference Paper
• Filtering Genes for Cluster and Network Analysis  Academic Article
• Fine-Scale Patterns of Population Stratification Confound Rare Variant Association Tests  Academic Article
• Fluctuation domains in adaptive evolution  Academic Article
• Forty-Three Loci Associated with Plasma Lipoprotein Size, Concentration, and Cholesterol Content in Genome-Wide Analysis  Academic Article
• Function of PEA3 Ets transcription factors in mammary gland development and oncogenesis.  Academic Article
• Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network  Academic Article
• Functional rescue of vitamin C synthesis deficiency in human cells using adenoviral-based expression of murine l-gulono-γ-lactone oxidase  Academic Article
• Fundamentals of Fungal Molecular Population Genetic Analyses  Academic Article
• Gene Regulation Divergence Is a Major Contributor to the Evolution of Dobzhansky–Muller Incompatibilities between Species of Drosophila  Academic Article
• Gene duplication and divergence produce divergent MHC genotypes without disassortative mating  Academic Article
• Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression  Academic Article
• Genetic distance and species formation in evolving populations  Academic Article
• Genetics of microenvironmental canalization in Arabidopsis thaliana  Academic Article
• Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae  Academic Article
• Genome-Wide Association Analysis of Soluble ICAM-1 Concentration Reveals Novel Associations at the NFKBIK, PNPLA3, RELA, and SH2B3 Loci  Academic Article
• Genomic DNA Methylation Signatures Enable Concurrent Diagnosis and Clinical Genetic Variant Classification in Neurodevelopmental Syndromes  Academic Article
• Genotype-by-environment interactions for cuticular hydrocarbon expression inDrosophila simulans  Academic Article
• Hair Cortisol in Twins: Heritability and Genetic Overlap with Psychological Variables and Stress-System Genes  Academic Article
• Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus  Academic Article
• HiTEC: accurate error correction in high-throughput sequencing data  Academic Article
• Host Cell Factor-1 and E2F4 Interact Via Multiple Determinants in Each Protein  Academic Article
• Human pluripotent stem cells identify molecular targets of trisomy 12 in chronic lymphocytic leukemia patients  Academic Article
• HypF, a Carbamoyl Phosphate-converting Enzyme Involved in [NiFe] Hydrogenase Maturation  Academic Article
• IQ and the Genetics of Autism  Academic Article
• Identifying genetic and environmental risk factors for chronic orofacial pain syndromes: human models.  Academic Article
• IgA and IgG antineutrophil cytoplasmic antibody engagement of Fc receptor genetic variants influences granulomatosis with polyangiitis  Academic Article
• Impact of Selection Bias on Estimation of Subsequent Event Risk  Academic Article
• Imputation of missing genotypes: an empirical evaluation of IMPUTE  Academic Article
• Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins  Academic Article
• Inferring Bacterial Genome Flux While Considering Truncated Genes  Academic Article
• Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans.  Academic Article
• Inheritance of static and dynamic arm strength and some of its determinants  Academic Article
• Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models  Academic Article
• JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL  Academic Article
• Kinematic Analysis of Drosophila Larval Locomotion in Response to Intermittent Light Pulses  Academic Article
• Les datations moléculaires à l’heure de la génomique  Academic Article
• Local Frequency Dependence and Global Coexistence  Academic Article
• Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations  Conference Paper
• Male Sex Drive and the Maintenance of Sex: Evidence from Drosophila  Academic Article
• Medulloblastoma stem cells: Modeling tumor heterogeneity  Academic Article
• Meta-analysis of SNPs involved in variance heterogeneity using Levene’s test for equal variances  Academic Article
• Modeling Complex Disease with Demographic and Environmental Covariates and a Candidate Gene Marker  Academic Article
• Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs <b><i>(Xenopus)</i></b>  Academic Article
• Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water  Academic Article
• Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii  Academic Article
• Molecular, developmental, and evolutionary genetic studies highlight rapid evolution of genes and genetic systems  Academic Article
• Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes  Academic Article
• Multicopy gene family evolution on primate Y chromosomes  Academic Article
• Multiple Mechanisms Promote the Retained Expression of Gene Duplicates in the Tetraploid Frog Xenopus laevis  Academic Article
• Multiple substitutions create biased estimates of divergence times and small increases in the variance to mean ratio  Academic Article
• Multivariate Meta-Analysis of Genetic Association Studies: A Simulation Study  Academic Article
• New Tools for Investigating the Comparative Biology of Caenorhabditis  briggsae and C. elegans  Academic Article
• New loci associated with kidney function and chronic kidney disease  Academic Article
• No contribution of angiotensin-converting enzyme (ACE) gene variants to severe obesity: a model for comprehensive case/control and quantitative cladistic analysis of ACE in human diseases  Academic Article
• On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A  Academic Article
• On selection in finite populations  Academic Article
• On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network  Academic Article
• Organization and evolution of alpha satellite DNA from human chromosome 11  Academic Article
• Oxysterol Activators of Liver X Receptor and 9-cis-Retinoic Acid Promote Sequential Steps in the Synthesis and Secretion of Tumor Necrosis Factor-α from Human Monocytes  Academic Article
• Pan-African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’  Academic Article
• Pathways of Genetic Code Evolution in Ancient and Modern Organisms  Academic Article
• Perspectives on eye development  Academic Article
• Phosphorylated AbsA2 Negatively Regulates Antibiotic Production in Streptomyces coelicolor through Interactions with Pathway-Specific Regulatory Gene Promoters  Academic Article
• Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)  Academic Article
• Phylogenetic and functional analyses of the cytochrome P450 family 4  Academic Article
• Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones  Academic Article
• Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau  Academic Article
• Polyploidy in Amphibia  Academic Article
• Population Evolution on a Multiplicative Single-Peak Fitness Landscape  Academic Article
• Population Genetics Without Intraspecific Data  Academic Article
• Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern  Academic Article
• Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos  Academic Article
• Predictive power of individual genetic and environmental factor scores  Academic Article
• Probability genotype imputation method and integrated weighted lasso for QTL identification  Academic Article
• Programming gene expression with combinatorial promoters  Academic Article
• RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods  Academic Article
• RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences  Academic Article
• RUNAWAY SEXUAL SELECTION LEADS TO GOOD GENES  Academic Article
• Rapid Evolution Through Gene Duplication and Subfunctionalization of the Testes-Specific α4 Proteasome Subunits in DrosophilaSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY542377, AY542378, AY542379, AY542380, AY542381, AY542382, AY542383, AY542384, AY542385, AY542386, AY542387, AY542388, AY542389, AY542390, AY542391, AY542392, AY542393, AY542394, AY542395, AY542396, AY542397, AY542398, AY542399, AY542400, AY542401, AY542402, AY542403, AY542404, AY542405, AY542406, AY542407, AY542408, AY542409, AY542410, AY542411, AY542412, AY542413, AY542414, AY542415, AY542416, AY542417, AY542418, AY542419, AY542420, AY542421, AY542422, AY542423, AY542424, AY542425, AY542426, AY542427, AY542428, AY542429, AY542430, AY542431, AY542432.  Academic Article
• Reconstructing the Prior Probabilities of Allelic Phylogenies  Academic Article
• Redundant and non-functional guide RNA genes in Trypanosoma brucei are a consequence of multiple genes per minicircle  Academic Article
• Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria  Academic Article
• Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus)  Academic Article
• Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech)  Academic Article
• Replication of an Egfr-Wing Shape Association in a Wild-Caught Cohort of Drosophila melanogaster  Academic Article
• Repopulation of ?0 cells with mitochondria from a patient with a mitochondrial DNA point mutation in tRNAGly results in respiratory chain dysfunction  Academic Article
• Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti  Academic Article
• Search for the sex-determining switch in monotremes: Mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus  Academic Article
• Selection and Slippage Creating Serine Homopolymers  Academic Article
• Sex solves Haldane’s dilemma  Academic Article
• Signature proteins that are distinctive of alpha proteobacteria  Academic Article
• Statistical genetics with application to population-based study design: a primer for clinicians  Academic Article
• Stereochemical and dynamic aspects of genetic recombination.  Academic Article
• Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements  Academic Article
• THE SAMPLING DISTRIBUTION OF LINKAGE DISEQUILIBRIUM  Academic Article
• Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome  Academic Article
• The Effect of Nonindependent Mate Pairing on the Effective Population Size  Academic Article
• The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells  Academic Article
• The Italian AICE-Genetics hemophilia A database: results and correlation with clinical phenotype  Academic Article
• The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits  Academic Article
• The Pipid Root  Academic Article
• The Response of Amino Acid Frequencies to Directional Mutation Pressure in Mitochondrial Genome Sequences Is Related to the Physical Properties of the Amino Acids and to the Structure of the Genetic Code  Academic Article
• The Role of Single-stranded DNA in Flp-mediated Strand Exchange  Academic Article
• The Transcriptional Repressor ZEB Regulates p73 Expression at the Crossroad between Proliferation and Differentiation  Academic Article
• The advantage of recombination when selection is acting at many genetic Loci  Academic Article
• The advantages and disadvantages of horizontal gene transfer and the emergence of the first species  Academic Article
• The detection of deleterious selection using ancestors inferred from a phylogenetic history  Academic Article
• The distribution of nucleotide site differences between two finite sequences  Academic Article
• The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach  Academic Article
• The genetic basis of Haldane's rule and the nature of asymmetric hybrid male sterility among Drosophila simulans, Drosophila mauritiana and Drosophila sechellia.  Academic Article
• The paradox of HBV evolution as revealed from a 16th century mummy  Academic Article
• The sampling theory of neutral alleles and an urn model in population genetics  Academic Article
• The survival probability of a mutant in a multidimensional population  Academic Article
• The tissue polarity gene nemo carries out multiple roles in patterning during Drosophila development  Academic Article
• The variance of linkage disequilibrium between three loci in a finite population  Academic Article
• Three functional classes of transcriptional activation domain  Academic Article
• Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?  Academic Article
• Tipping the scales: Evolution of the allometric slope independent of average trait size  Academic Article
• Towards a genetic architecture of cryptic genetic variation and genetic assimilation: The contribution of K. G. Bateman  Academic Article
• Trait-to-Gene  Academic Article
• Transient virulence of emerging pathogens  Academic Article
• Uncovering rate variation of lateral gene transfer during bacterial genome evolution  Academic Article
• Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes  Academic Article
• Use of latent class models to accommodate inter-laboratory variation in assessing genetic polymorphisms associated with disease risk  Academic Article
• Variance of sequence divergence.  Academic Article
• Vimentin Exposed on Activated Platelets and Platelet Microparticles Localizes Vitronectin and Plasminogen Activator Inhibitor Complexes on Their Surface  Academic Article
• Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods  Academic Article
• c-Jun Homodimers Can Function as a Context-Specific Coactivator  Academic Article
• “Patchy-Tachy” Leads to False Positives for Recombination  Academic Article