Models, Genetic Concept

subject area of

• DHCR7 mutation carrier rates and prevalence of the RSH/Smith‐Lemli‐Opitz syndrome: Where are the patients?  Journal Articles
• A BIOGEOGRAPHIC GENETIC APPROACH FOR TESTING THE ROLE OF REINFORCEMENT: THE CASE OFDROSOPHILA PSEUDOOBSCURAANDD. PERSIMILIS  Journal Articles
• A Bayesian hierarchical model for improving measurement of 5mC and 5hmC levels: Toward revealing associations between phenotypes and methylation states  Journal Articles
• A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods  Journal Articles
• A FLEXIBLE NONPARAMETRIC APPROACH TO FIND CANDIDATE GENES ASSOCIATED WITH DISEASE IN MICROARRAY EXPERIMENTS  Journal Articles
• A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan Tetrahymena thermophila  Journal Articles
• A Population Genetics Model for Multiple Quantitative Traits Exhibiting Pleiotropy and Epistasis  Journal Articles
• A Pseudo-EM Algorithm for Clustering Incomplete Longitudinal Data  Journal Articles
• A Quantitative Approach to Detect and Overcome PCR Inhibition in Ancient DNA Extracts  Journal Articles
• A Reanalysis of Protein Polymorphism in Drosophila Melanogaster, D. Simulans, D. Sechellia and D. Mauritiana: Effects of Population Size and Selection  Journal Articles
• A Step Toward Barcoding Life: A Model-Based, Decision-Theoretic Method to Assign Genes to Preexisting Species Groups  Journal Articles
• A Unified Model of Codon Reassignment in Alternative Genetic Codes  Journal Articles
• A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code  Journal Articles
• A method to estimate the contribution of rare coding variants to complex trait heritability  Journal Articles
• A method to estimate the contribution of regional genetic associations to complex traits from summary association statistics  Journal Articles
• A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution  Journal Articles
• A mixability theory for the role of sex in evolution  Journal Articles
• A robust method to estimate regional polygenic correlation under misspecified linkage disequilibrium structure  Journal Articles
• A sampling theory of selectively neutral alleles in a subdivided population.  Journal Articles
• A source of small repeats in genomic DNA.  Journal Articles
• A theoretical study of random segregation of minicircles in trypanosomatids  Journal Articles
• Adenoviral Vectors Expressing Lymphotactin and Interleukin 2 or Lymphotactin and Interleukin 12 Synergize to Facilitate Tumor Regression in Murine Breast Cancer Models  Journal Articles
• Adenoviruses with nonidentical terminal sequences are viable  Journal Articles
• An emerging role for Wnt and GSK3 signaling pathways in schizophrenia  Journal Articles
• An evolutionary model for the insect vitellins  Journal Articles
• An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models  Journal Articles
• Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)  Journal Articles
• Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta)  Journal Articles
• Antagonistic effects of the SRp30c protein and cryptic 5' splice sites on the alternative splicing of the apoptotic regulator Bcl-x.  Journal Articles
• Antimicrobial resistance surveillance in the genomic age  Journal Articles
• Association Between Levels of Coding Sequence Divergence and Gene Misregulation in Drosophila Male Hybrids  Journal Articles
• Association of TLR4 polymorphisms with Mycobacterium avium subspecies paratuberculosis infection status in Canadian Holsteins  Journal Articles
• Asymptotic rates of growth of the extinction probability of a mutant gene  Journal Articles
• Autoregulation of the Drosophila disconnected Gene in the Developing Visual System  Journal Articles
• Bayesian Phylogenetics Using an RNA Substitution Model Applied to Early Mammalian Evolution  Journal Articles
• Binding Site Determinants for the LysR-Type Transcriptional Regulator PcaQ in the Legume Endosymbiont Sinorhizobium meliloti  Journal Articles
• Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites  Journal Articles
• CORRIGENDUM  Journal Articles
• Cancer phenomics: RET and PTEN as illustrative models  Journal Articles
• Cellular and molecular architecture of hematopoietic stem cells and progenitors in genetic models of bone marrow failure  Journal Articles
• Cleavage-dependent Ligation by the FLP Recombinase  Journal Articles
• Clinical, enzymatic and molecular characterization of nine new patients with malonyl‐coenzyme A decarboxylase deficiency  Journal Articles
• Co-operation between Polymerases and Nucleotide Synthetases in the RNA World  Journal Articles
• Codon Usage and Selection on Proteins  Journal Articles
• Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage  Journal Articles
• Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus  Journal Articles
• Comparing the performance of linear and nonlinear principal components in the context of high-dimensional genomic data integration  Journal Articles
• Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities  Journal Articles
• Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability  Journal Articles
• Compensatory neutral mutations and the evolution of RNA.  Journal Articles
• Competence for collagenase gene expression by tissue fibroblasts requires activation of an interleukin 1 alpha autocrine loop.  Journal Articles
• Concepts and techniques in molecular biology—An overview*  Journal Articles
• Contribution of Large Region Joint Associations to Complex Traits Genetics  Journal Articles
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Journal Articles
• Cryptic Genetic Variation in Natural Populations: A Predictive Framework  Journal Articles
• Deciphering and simulating models of radiation genotoxicity with CRISPR/Cas9 systems  Journal Articles
• Decoding ‘Unnecessary Complexity’: A Law of Complexity and a Concept of Hidden Variation Behind “Missing Heritability” in Precision Medicine  Journal Articles
• Development of a FLP/frt System for Generating Helper-Dependent Adenoviral Vectors  Journal Articles
• Directionality in the evolution of influenza A haemagglutinin  Journal Articles
• Discordance between Genetic Structure and Morphological, Ecological, and Physiological Adaptation in Lake Magadi Tilapia  Journal Articles
• Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus)  Journal Articles
• Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?  Journal Articles
• Effects of colonization asymmetries on metapopulation persistence  Journal Articles
• Enzyme Evolution Explained (Sort Of)  Journal Articles
• Epigenetic Age and the Risk of Incident Atrial Fibrillation  Journal Articles
• Epigenetic Regulation of Tumor Necrosis Factor Alpha  Journal Articles
• Estimates of DNA and protein sequence divergence: an examination of some assumptions.  Journal Articles
• Estimates of Heritabilities and of Genetic and Phenotypic Correlations among Growth and Reproductive Traits in Yearling Angus Bulls1  Journal Articles
• Estimating Selection Pressures from Limited Comparative Data  Journal Articles
• Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss  Journal Articles
• Evaluation of the Disease Liability of CFTR Variants  Journal Articles
• Evidence for Mitotic Recombination within the Basidia of a Hybrid Cross of Cryptococcus neoformans  Journal Articles
• Evidence for canalization of Distal‐less function in the leg of Drosophila melanogaster  Journal Articles
• Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila  Journal Articles
• Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia  Journal Articles
• Evolution of RAG-1 in Polyploid Clawed Frogs  Journal Articles
• Evolution of mitochondrial-encoded cytochrome oxidase subunits in endothermic fish: The importance of taxon-sampling in codon-based models  Journal Articles
• Evolutionary Stability of Minimal Mutation Rates in an Evo-epidemiological Model  Journal Articles
• Evolutionary affinity of billfishes (Xiphiidae and Istiophoridae) and flatfishes (Plueronectiformes): Independent and trans-subordinal origins of endothermy in teleost fishes  Journal Articles
• Evolutionary implications of the relationship between genome size and body size in flatworms and copepods  Journal Articles
• Expected frequencies of codon use as a function of mutation rates and codon fitnesses  Journal Articles
• Faà di Bruno’s formula and the distributions of random partitions in population genetics and physics  Conferences
• Filtering Genes for Cluster and Network Analysis  Journal Articles
• Fine-Scale Patterns of Population Stratification Confound Rare Variant Association Tests  Journal Articles
• Fluctuation domains in adaptive evolution  Journal Articles
• Forty-Three Loci Associated with Plasma Lipoprotein Size, Concentration, and Cholesterol Content in Genome-Wide Analysis  Journal Articles
• Function of PEA3 Ets transcription factors in mammary gland development and oncogenesis.  Journal Articles
• Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network  Journal Articles
• Functional rescue of vitamin C synthesis deficiency in human cells using adenoviral-based expression of murine l-gulono-γ-lactone oxidase  Journal Articles
• Fundamentals of Fungal Molecular Population Genetic Analyses  Journal Articles
• Gene Regulation Divergence Is a Major Contributor to the Evolution of Dobzhansky–Muller Incompatibilities between Species of Drosophila  Journal Articles
• Gene duplication and divergence produce divergent MHC genotypes without disassortative mating  Journal Articles
• Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression  Journal Articles
• Genetic distance and species formation in evolving populations  Journal Articles
• Genetics of microenvironmental canalization in Arabidopsis thaliana  Journal Articles
• Genome-Wide Association Analysis of Soluble ICAM-1 Concentration Reveals Novel Associations at the NFKBIK, PNPLA3, RELA, and SH2B3 Loci  Journal Articles
• Genomic DNA Methylation Signatures Enable Concurrent Diagnosis and Clinical Genetic Variant Classification in Neurodevelopmental Syndromes  Journal Articles
• Genotype‐by‐environment interactions for cuticular hydrocarbon expression in Drosophila simulans  Journal Articles
• Hair Cortisol in Twins: Heritability and Genetic Overlap with Psychological Variables and Stress-System Genes  Journal Articles
• Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus  Journal Articles
• HiTEC: accurate error correction in high-throughput sequencing data  Journal Articles
• Host Cell Factor-1 and E2F4 Interact Via Multiple Determinants in Each Protein  Journal Articles
• Human pluripotent stem cells identify molecular targets of trisomy 12 in chronic lymphocytic leukemia patients  Journal Articles
• HypF, a Carbamoyl Phosphate-converting Enzyme Involved in [NiFe] Hydrogenase Maturation  Journal Articles
• IQ and the Genetics of Autism  Journal Articles
• Identifying genetic and environmental risk factors for chronic orofacial pain syndromes: human models.  Journal Articles
• IgA and IgG antineutrophil cytoplasmic antibody engagement of Fc receptor genetic variants influences granulomatosis with polyangiitis  Journal Articles
• Impact of Selection Bias on Estimation of Subsequent Event Risk  Journal Articles
• Imputation of missing genotypes: an empirical evaluation of IMPUTE  Journal Articles
• In-depth characterization of the microRNA transcriptome in a leukemia progression model.  Journal Articles
• Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins  Journal Articles
• Inferring Bacterial Genome Flux While Considering Truncated Genes  Journal Articles
• Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans.  Journal Articles
• Inheritance of static and dynamic arm strength and some of its determinants  Journal Articles
• Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models  Journal Articles
• JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL  Journal Articles
• Kinematic Analysis of Drosophila Larval Locomotion in Response to Intermittent Light Pulses  Journal Articles
• Les datations moléculaires à l’heure de la génomique  Journal Articles
• Local Frequency Dependence and Global Coexistence  Journal Articles
• Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations  Conferences
• Male Sex Drive and the Maintenance of Sex: Evidence from Drosophila  Journal Articles
• Medulloblastoma stem cells: Modeling tumor heterogeneity  Journal Articles
• Meta-analysis of SNPs involved in variance heterogeneity using Levene’s test for equal variances  Journal Articles
• Modeling Complex Disease with Demographic and Environmental Covariates and a Candidate Gene Marker  Journal Articles
• Molecular Polymorphism and Divergence of Duplicated Genes in Tetraploid African Clawed Frogs <b><i>(Xenopus)</i></b>  Journal Articles
• Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water  Journal Articles
• Molecular evolution of the vesicle coat component βCOP in Toxoplasma gondii  Journal Articles
• Molecular, developmental, and evolutionary genetic studies highlight rapid evolution of genes and genetic systems  Journal Articles
• Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes  Journal Articles
• Multicopy gene family evolution on primate Y chromosomes  Journal Articles
• Multiple Mechanisms Promote the Retained Expression of Gene Duplicates in the Tetraploid Frog Xenopus laevis  Journal Articles
• Multiple substitutions create biased estimates of divergence times and small increases in the variance to mean ratio  Journal Articles
• Multivariate Meta-Analysis of Genetic Association Studies: A Simulation Study  Journal Articles
• New Tools for Investigating the Comparative Biology of Caenorhabditis  briggsae and C. elegans  Journal Articles
• New loci associated with kidney function and chronic kidney disease  Journal Articles
• ORFcor: Identifying and Accommodating ORF Prediction Inconsistencies for Phylogenetic Analysis  Journal Articles
• On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A  Journal Articles
• On selection in finite populations  Journal Articles
• On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network  Journal Articles
• Organization and evolution of alpha satellite DNA from human chromosome 11  Journal Articles
• Oxysterol Activators of Liver X Receptor and 9-cis-Retinoic Acid Promote Sequential Steps in the Synthesis and Secretion of Tumor Necrosis Factor-α from Human Monocytes  Journal Articles
• Pan‐African phylogeography of a model organism, the African clawed frog ‘Xenopus laevis’  Journal Articles
• Pathways of Genetic Code Evolution in Ancient and Modern Organisms  Journal Articles
• Perspectives on eye development  Journal Articles
• Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)  Journal Articles
• Phylogenetic and functional analyses of the cytochrome P450 family 4  Journal Articles
• Phylogenetics of Fanged Frogs: Testing Biogeographical Hypotheses at the Interface of the Asian and Australian Faunal Zones  Journal Articles
• Phylogeography and evolution of a fungal–insect association on theTibetanPlateau  Journal Articles
• Polyploidy in Amphibia  Journal Articles
• Population Evolution on a Multiplicative Single-Peak Fitness Landscape  Journal Articles
• Population Genetics Without Intraspecific Data  Journal Articles
• Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern  Journal Articles
• Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos  Journal Articles
• Predictive power of individual genetic and environmental factor scores  Journal Articles
• Programming gene expression with combinatorial promoters  Journal Articles
• RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods  Journal Articles
• RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences  Journal Articles
• RUNAWAY SEXUAL SELECTION LEADS TO GOOD GENES  Journal Articles
• Rapid Evolution Through Gene Duplication and Subfunctionalization of the Testes-Specific α4 Proteasome Subunits in DrosophilaSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY542377, AY542378, AY542379, AY542380, AY542381, AY542382, AY542383, AY542384, AY542385, AY542386, AY542387, AY542388, AY542389, AY542390, AY542391, AY542392, AY542393, AY542394, AY542395, AY542396, AY542397, AY542398, AY542399, AY542400, AY542401, AY542402, AY542403, AY542404, AY542405, AY542406, AY542407, AY542408, AY542409, AY542410, AY542411, AY542412, AY542413, AY542414, AY542415, AY542416, AY542417, AY542418, AY542419, AY542420, AY542421, AY542422, AY542423, AY542424, AY542425, AY542426, AY542427, AY542428, AY542429, AY542430, AY542431, AY542432.  Journal Articles
• Rapid determination of transgene copy number in tobacco by competitive PCR using a pair of SSR primers  Journal Articles
• Reconstructing the Prior Probabilities of Allelic Phylogenies  Journal Articles
• Redundant and non-functional guide RNA genes in Trypanosoma brucei are a consequence of multiple genes per minicircle  Journal Articles
• Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria  Journal Articles
• Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus)  Journal Articles
• Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech)  Journal Articles
• Replication of an Egfr-Wing Shape Association in a Wild-Caught Cohort of Drosophila melanogaster  Journal Articles
• Repopulation of ?0 cells with mitochondria from a patient with a mitochondrial DNA point mutation in tRNAGly results in respiratory chain dysfunction  Journal Articles
• Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti  Journal Articles
• Search for the sex-determining switch in monotremes: Mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus  Journal Articles
• Selection and Slippage Creating Serine Homopolymers  Journal Articles
• Sex solves Haldane’s dilemma  Journal Articles
• Signature proteins that are distinctive of alpha proteobacteria  Journal Articles
• Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality  Journal Articles
• Statistical genetics with application to population-based study design: a primer for clinicians  Journal Articles
• Stereochemical and dynamic aspects of genetic recombination.  Journal Articles
• Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements  Journal Articles
• THE SAMPLING DISTRIBUTION OF LINKAGE DISEQUILIBRIUM  Journal Articles
• Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome  Journal Articles
• The Effect of Nonindependent Mate Pairing on the Effective Population Size  Journal Articles
• The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells  Journal Articles
• The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits  Journal Articles
• The Pipid Root  Journal Articles
• The Response of Amino Acid Frequencies to Directional Mutation Pressure in Mitochondrial Genome Sequences Is Related to the Physical Properties of the Amino Acids and to the Structure of the Genetic Code  Journal Articles
• The Role of Single-stranded DNA in Flp-mediated Strand Exchange  Journal Articles
• The Transcriptional Repressor ZEB Regulates p73 Expression at the Crossroad between Proliferation and Differentiation  Journal Articles
• The advantage of recombination when selection is acting at many genetic Loci  Journal Articles
• The advantages and disadvantages of horizontal gene transfer and the emergence of the first species  Journal Articles
• The detection of deleterious selection using ancestors inferred from a phylogenetic history  Journal Articles
• The distribution of nucleotide site differences between two finite sequences  Journal Articles
• The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach  Journal Articles
• The genetic basis of Haldane's rule and the nature of asymmetric hybrid male sterility among Drosophila simulans, Drosophila mauritiana and Drosophila sechellia.  Journal Articles
• The paradox of HBV evolution as revealed from a 16th century mummy  Journal Articles
• The sampling theory of neutral alleles and an urn model in population genetics  Journal Articles
• The survival probability of a mutant in a multidimensional population  Journal Articles
• The tissue polarity gene nemo carries out multiple roles in patterning during Drosophila development  Journal Articles
• The variance of linkage disequilibrium between three loci in a finite population  Journal Articles
• Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?  Journal Articles
• Tipping the scales: Evolution of the allometric slope independent of average trait size  Journal Articles
• Towards a genetic architecture of cryptic genetic variation and genetic assimilation: The contribution of K. G. Bateman  Journal Articles
• Trait-to-Gene  Journal Articles
• Transient virulence of emerging pathogens  Journal Articles
• Uncovering rate variation of lateral gene transfer during bacterial genome evolution  Journal Articles
• Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes  Journal Articles
• Use of latent class models to accommodate inter-laboratory variation in assessing genetic polymorphisms associated with disease risk  Journal Articles
• Variance of sequence divergence.  Journal Articles
• Vimentin Exposed on Activated Platelets and Platelet Microparticles Localizes Vitronectin and Plasminogen Activator Inhibitor Complexes on Their Surface  Journal Articles
• Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods  Journal Articles
• c-Jun Homodimers Can Function as a Context-Specific Coactivator  Journal Articles
• “Patchy-Tachy” Leads to False Positives for Recombination  Journal Articles