Genes, Bacterial Concept

subject area of

• Molecular characterization of the Pseudomonas aeruginosa serotype O5 (PAO1) B‐band lipopolysaccharide gene cluster  Journal Articles
• Helicobacter pyloriPhysiology Predicted from Genomic Comparison of Two Strains  Journal Articles
• Pseudomonas aeruginosaB-band lipopolysaccharide geneswbpAandwbpIand theirEscherichia colihomologueswecCandwecBare not functionally interchangeable  Journal Articles
• SalmonellaProduces an O-Antigen Capsule Regulated by AgfD and Important for Environmental Persistence  Journal Articles
• A Catalog of Reference Genomes from the Human Microbiome  Journal Articles
• A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria  Journal Articles
• A Cryptic Polyene Biosynthetic Gene Cluster in Streptomyces calvus Is Expressed upon Complementation with a Functional bldA Gene  Journal Articles
• A Highly Efficient Molecular Cloning Platform that Utilises a Small Bacterial Toxin Gene  Journal Articles
• A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism  Journal Articles
• A methods comparison for the isolation and detection of thermophilic Campylobacter in agricultural watersheds  Journal Articles
• A phosphate transport system is required for symbiotic nitrogen fixation by Rhizobium meliloti  Journal Articles
• A phylogenetic analysis of the pSymB replicon from the Sinorhizobium meliloti genome reveals a complex evolutionary history  Journal Articles
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Journal Articles
• A transglutaminase homologue as a condensation catalyst in antibiotic assembly lines  Journal Articles
• Ability of the Digene Hybrid Capture II Test To Identify Chlamydia trachomatis and Neisseria gonorrhoeae in Cervical Specimens  Journal Articles
• An ABC-Type Cobalt Transport System Is Essential for Growth of Sinorhizobium melilotiat Trace Metal Concentrations  Journal Articles
• An Engineered Allele of afsQ1 Facilitates the Discovery and Investigation of Cryptic Natural Products  Journal Articles
• Analysis of C₄‐dicarboxylate transport genes in Rhizobium meliloti  Journal Articles
• Antibacterial drug discovery in the resistance era  Journal Articles
• Antibiotic resistance in the environment: a link to the clinic?  Journal Articles
• Antibiotic resistance is ancient  Journal Articles
• Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production  Journal Articles
• Are essential genes really essential?  Journal Articles
• Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections  Journal Articles
• Bacteria Getting into Shape: Genetic Determinants of E. coli Morphology  Journal Articles
• Bacterial Chemotaxis: The motor connection  Journal Articles
• Biosynthesis of ebelactone A: isotopic tracer, advanced precursor and genetic studies reveal a thioesterase-independent cyclization to give a polyketide β-lactone  Journal Articles
• Biosynthetic Pathway for Mannopeptimycins, Lipoglycopeptide Antibiotics Active against Drug-Resistant Gram-Positive Pathogens  Journal Articles
• BldD fromStreptomyces coelicoloris a non-essential global regulator that binds its own promoter as a dimer  Journal Articles
• BldD is a direct regulator of key developmental genes in Streptomyces coelicolor A3(2)  Journal Articles
• Bringing order to a complex molecular machine: The assembly of the bacterial flagella  Journal Articles
• CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database  Journal Articles
• CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database  Journal Articles
• Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling  Journal Articles
• Characterization of a cryptic plasmid from Pseudomonas sp. and utilization of its temperature-sensitive derivatives for genetic manipulation  Journal Articles
• Characterization of an inducible vancomycin resistance system in Streptomyces coelicolor reveals a novel gene (vanK) required for drug resistance  Journal Articles
• Characterization of the Rhizobium (Sinorhizobium) meliloti high- and low-affinity phosphate uptake systems  Journal Articles
• Chemical genomics in Escherichia coli identifies an inhibitor of bacterial lipoprotein targeting  Journal Articles
• Clinically relevant mutations in core metabolic genes confer antibiotic resistance  Journal Articles
• Cloning and Characterization of ectABC Cluster from Bacillus alcalophilus DTY1  Journal Articles
• Cloning and analysis of duplicated rfbM and rfbK genes involved in the formation of GDP-mannose in Escherichia coli O9:K30 and participation of rfb genes in the synthesis of the group I K30 capsular polysaccharide  Journal Articles
• Cloning of HSP70 (dnaK) gene from Clostridium perfringens using a general polymerase chain reaction based approach  Journal Articles
• Cloning of a Chromosomal Region Responsible for Streptolysin S Production in Streptococcus pyogenes  Conferences
• Cloning of the HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene  Journal Articles
• Cloning of the hsp70 (dnaK) genes from Rhizobium meliloti and Pseudomonas cepacia: phylogenetic analyses of mitochondrial origin based on a highly conserved protein sequence  Journal Articles
• ClpP inhibitors are produced by a widespread family of bacterial gene clusters  Journal Articles
• Common biosynthetic origins for polycyclic tetramate macrolactams from phylogenetically diverse bacteria  Journal Articles
• Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria  Journal Articles
• Comparison of two poultry litter qPCR assays targeting the 16S rRNA gene of Brevibacterium sp.  Journal Articles
• Comprehensive Analysis of Gene-Environmental Interactions with Temporal Gene Expression Profiles in Pseudomonas aeruginosa  Journal Articles
• Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth  Journal Articles
• Contributions of Speed and Accuracy to Translational Selection in Bacteria  Journal Articles
• Control of RpoS in global gene expression of Escherichia coli in minimal media  Journal Articles
• Controlled induction of the RpoS regulon inEscherichia coli, using an RpoS-expressing plasmid  Journal Articles
• Coordinated Regulation of Two Independent Cell-Cell Signaling Systems and Swarmer Differentiation inSalmonella entericaSerovar Typhimurium  Journal Articles
• Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum  Journal Articles
• Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region  Journal Articles
• Direct detection of vanA and vanB genes in clinical specimens for rapid identification of vancomycin resistant enterococci (VRE) using multiplex PCR  Journal Articles
• Discovery of Novel Cell Wall-Active Compounds Using P _ywaC , a Sensitive Reporter of Cell Wall Stress, in the Model Gram-Positive Bacterium Bacillus subtilis  Journal Articles
• Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?  Journal Articles
• Estimating the Frequency of Horizontal Gene Transfer Using Phylogenetic Models of Gene Gain and Loss  Journal Articles
• Expanding the soil antibiotic resistome: exploring environmental diversity  Journal Articles
• Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm  Journal Articles
• Forces shaping the antibiotic resistome  Journal Articles
• Foreign Gene Expression by Human Adenovirus Type 5-Based Vectors Studied Using Firefly Luciferase and Bacterial β-Galactosidase Genes as Reporters  Journal Articles
• Functional analysis of genes responsible for the synthesis of the B-band O antigen of Pseudomonas aeruginosa serotype O6 lipopolysaccharide The GenBank accession number for the sequence reported in this paper is AF035937.  Journal Articles
• Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?  Journal Articles
• Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing  Journal Articles
• Genetic Analysis of Mutations Affecting pckA Regulation in Rhizobium (Sinorhizobium) meliloti  Journal Articles
• Genetic characteristics and molecular epidemiology of vancomycin-resistant Enterococci isolates from Caribbean countries  Journal Articles
• Genetic redundancy is prevalent within the 6.7 Mb Sinorhizobium meliloti genome  Journal Articles
• Genetics of O-Antigen Biosynthesis inPseudomonas aeruginosa  Journal Articles
• Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes  Journal Articles
• Genome variation in the symbiotic nitrogen-fixing bacteriumSinorhizobium meliloti  Journal Articles
• Glycopeptide antibiotic resistance genes in glycopeptide-producing organisms  Journal Articles
• Heterogeneity in phenotypic and genotypic characteristics among strains of Hafnia alvei  Journal Articles
• Heterologous Complementation Reveals a Specialized Activity for BacA in the Medicago–Sinorhizobium meliloti Symbiosis  Journal Articles
• Hiding in plain sight—wildlife as a neglected reservoir and pathway for the spread of antimicrobial resistance: a narrative review  Journal Articles
• High rates of lateral gene transfer are not due to false diagnosis of gene absence  Journal Articles
• Human milk composition differs in healthy mothers and mothers with celiac disease  Journal Articles
• IS222, a new insertion element associated with the genome of Pseudomonas aeruginosa  Journal Articles
• Identification and characterization of hydrogen peroxide-sensitive mutants of Escherichia coli: genes that require OxyR for expression  Journal Articles
• Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli  Journal Articles
• Identification of Rhizobium-specific intergenic mosaic elements within an essential two-component regulatory system of Rhizobium species  Journal Articles
• Identification of a Hydroxyproline Transport System in the Legume Endosymbiont Sinorhizobium meliloti  Journal Articles
• Identification of mutants with altered phenazine production in Pseudomonas aeruginosa  Journal Articles
• Increased pyruvate orthophosphate dikinase activity results in an alternative gluconeogenic pathway in Rhizobium (Sinorhizobium) meliloti  Journal Articles
• Indirect stimulation of recombination in Escherichia coli K-12: dependence on recJ, uvrA, and uvrD  Journal Articles
• Inferring Bacterial Genome Flux While Considering Truncated Genes  Journal Articles
• Influence of Humans on Evolution and Mobilization of Environmental Antibiotic Resistome  Journal Articles
• Introduction of UAG, UAA, and UGA nonsense mutations at a specific site in the Escherichia coli chloramphenicol acetyltransferase gene: use in measurement of amber, ochre, and opal suppression in mammalian cells.  Journal Articles
• Involvement of the rml locus in core oligosaccharide and O polysaccharide assembly in Pseudomonas aeruginosa  Journal Articles
• Isolation and characterization of respiratory-deficient mutants of Escherichia coli K-12  Journal Articles
• Isolation and sequencing of gene fusions carried by λplacMu specialized transducing phage  Journal Articles
• Isolation of the rstA Gene as a Multicopy Suppressor of YjeE, an Essential ATPase of Unknown Function in Escherichia coli  Journal Articles
• Just-in-time transcription program in metabolic pathways  Journal Articles
• Lack of Correlation between Vacuolating Cytotoxin Activity, cagA Gene in Helicobacter pylori , and Peptic Ulcer Disease in Children  Journal Articles
• Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis  Journal Articles
• Lesions in Teichoic Acid Biosynthesis in Staphylococcus aureus Lead to a Lethal Gain of Function in the Otherwise Dispensable Pathway  Journal Articles
• Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa  Journal Articles
• Mapping and Regulation of Genes within Salmonella Pathogenicity Island 12 That Contribute to In Vivo Fitness of Salmonella enterica Serovar Typhimurium  Journal Articles
• Mechanism of Mu DNA transposition  Journal Articles
• Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk  Journal Articles
• Minimal gene set from Sinorhizobium ( Ensifer ) meliloti pSymA required for efficient symbiosis with Medicago  Journal Articles
• Molecular Analysis as an Aid To Assess the Public Health Risk of Non-O157 Shiga Toxin-Producing Escherichia coli Strains  Journal Articles
• Molecular analysis of the leukotoxin determinants from Pasteurella haemolytica serotypes 1 to 16  Journal Articles
• Molecular and expression analysis of the Rhizobium meliloti phosphoenolpyruvate carboxykinase (pckA) gene  Journal Articles
• Molecular basis for vancomycin resistance in Enterococcus faecium BM4147: biosynthesis of a depsipeptide peptidoglycan precursor by vancomycin resistance proteins VanH and VanA  Journal Articles
• Molecular epidemiology of vancomycin-resistant enterococcal bacteraemia: results from the Canadian Nosocomial Infection Surveillance Program, 1999-2009  Journal Articles
• Molecular mechanisms of cefoxitin resistance in Escherichia coli from the Toronto area hospitals  Journal Articles
• Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti  Journal Articles
• MurA (MurZ), the enzyme that catalyzes the first committed step in peptidoglycan biosynthesis, is essential in Escherichia coli  Journal Articles
• Mutants of Rhizobium meliloti defective in succinate metabolism  Journal Articles
• New Targets and Screening Approaches in Antimicrobial Drug Discovery  Journal Articles
• Nonrandom insertion of Tn5 into cloned human adeno virus DNA  Journal Articles
• Optimizing dimodular nonribosomal peptide synthetases and natural dipeptides in an Escherichia coli heterologous host  Journal Articles
• Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria  Journal Articles
• Origin and evolution of gene families in Bacteria and Archaea  Journal Articles
• Outbreak of Vancomycin-Susceptible Enterococcus faecium Containing the Wild-Type vanA Gene  Journal Articles
• Overexpression of the dctA gene in Rhizobium meliloti: effect on transport of C₄ dicarboxylates and symbiotic nitrogen fixation  Conferences
• Overexpression, Purification, and Characterization of VanX, a D-, D-Dipeptidase which Is Essential for Vancomycin Resistance in Enterococcus faecium BM4147  Journal Articles
• Pathogenic adaptation of intracellular bacteria by rewiring a cis -regulatory input function  Journal Articles
• Patterns of Bacterial Gene Movement  Journal Articles
• Phage–antibiotic combinations: a promising approach to constrain resistance evolution in bacteria  Journal Articles
• Phosphate Assimilation in Rhizobium ( Sinorhizobium ) meliloti : Identification of a pit -Like Gene  Journal Articles
• Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation  Journal Articles
• PilM/N/O/P Proteins Form an Inner Membrane Complex That Affects the Stability of the Pseudomonas aeruginosa Type IV Pilus Secretin  Journal Articles
• Properties of NAD+- and NADP+-dependent malic enzymes of Rhizobium (Sinorhizobium) meliloti and differential expression of their genes in nitrogen-fixing bacteroids  Journal Articles
• Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces a aThe GenBank accession numbers for the sequences reported in this paper are indicated in the text.  Journal Articles
• Pseudomonas aeruginosa B-band O-antigen chain length is modulated by Wzz (Ro1)  Journal Articles
• Quorum sensing in Escherichia coli , Salmonella typhimurium , and Vibrio harveyi : A new family of genes responsible for autoinducer production  Journal Articles
• Regulation of hydroperoxidase (catalase) expression inEscherichia coli  Journal Articles
• Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria  Journal Articles
• Regulatory evolution at the host–pathogen interface  Journal Articles
• RpoS regulation of gene expression during exponential growth of Escherichia coli K12  Journal Articles
• Sampling the Antibiotic Resistome  Journal Articles
• Second site mutations specifically suppress the Fix- phenotype of Rhizobium meliloti ndvF mutations on alfalfa: identification of a conditional ndvF-dependent mucoid colony phenotype.  Journal Articles
• Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes  Journal Articles
• Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria  Journal Articles
• Self Resistance to the Atypical Cationic Antimicrobial Peptide Edeine of Brevibacillus brevis Vm4 by the N-Acetyltransferase EdeQ  Journal Articles
• Signature proteins that are distinctive of alpha proteobacteria  Journal Articles
• Silencing cryptic specialized metabolism in Streptomyces by the nucleoid-associated protein Lsr2  Journal Articles
• Similarity between the Rhizobium meliloti flip gene and pathogenicity-associated genes from animal and plant pathogens  Journal Articles
• Site-directed mutagenesis and DNA sequence of pckA of Rhizobium NGR234, encoding phosphoenolpyruvate carboxykinase: gluconeogenesis and host-dependent symbiotic phenotype  Journal Articles
• Small non-coding RNAs in Streptomyces coelicolor  Journal Articles
• SseA is required for translocation of Salmonella pathogenicity island-2 effectors into host cells  Journal Articles
• Stationary Phase Expression of a Novel Escherichia coli Outer Membrane Lipoprotein and Its Relationship with Mammalian Apolipoprotein D  Journal Articles
• Symbiotic mutants of rhizobium meliloti that uncouple plant from bacterial differentiation  Journal Articles
• Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome  Journal Articles
• The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist  Journal Articles
• The Composite Genome of the Legume Symbiont Sinorhizobium meliloti  Journal Articles
• The Comprehensive Antibiotic Resistance Database  Journal Articles
• The Location of Substitutions and Bacterial Genome Arrangements  Journal Articles
• The Population Structure of Antibiotic-Producing Bacterial Symbionts ofApterostigma dentigerumAnts: Impacts of Coevolution and Multipartite Symbiosis  Journal Articles
• The Therapeutic Pipeline for Pseudomonas aeruginosa Infections  Journal Articles
• The antibiotic resistome: what's new?  Journal Articles
• The complete sequence of the 1,683-kb pSymB megaplasmid from the N ₂ -fixing endosymbiont Sinorhizobium meliloti  Journal Articles
• The development of a DNA microarray-based assay for the characterization of commercially formulated microbial products  Journal Articles
• The gene cluster for chloramphenicol biosynthesis in Streptomyces venezuelae ISP5230 includes novel shikimate pathway homologues and a monomodular non-ribosomal peptide synthetase gene The GenBank accession number for the sequence reported in this paper is AF262220.  Journal Articles
• The mosaic nature of the eukaryotic nucleus  Journal Articles
• The mutational specificity of 2-(2-furyl)-3-(5-nitro-2-furyl)-acrylamide (AF2) in the lacI gene of Escherichia coli  Journal Articles
• The occurrence and sources of Campylobacter spp., Salmonellaenterica and Escherichia coli O157:H7 in the Salmon River, British Columbia, Canada  Journal Articles
• The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterization The GenBank accession number for the sequence reported in this paper is AF286159.  Journal Articles
• The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria  Journal Articles
• The tRNA ^arg Gene and engA Are Essential Genes on the 1.7-Mb pSymB Megaplasmid of Sinorhizobium meliloti and Were Translocated Together from the Chromosome in an Ancestral Strain  Journal Articles
• Three rhamnosyltransferases responsible for assembly of the A‐band D‐rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A‐band and B‐band lipopolysaccharide synthesis  Journal Articles
• Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples  Journal Articles
• Trait-to-Gene  Journal Articles
• Transcriptional regulation of katE in Escherichia coli K-12  Journal Articles
• Transcriptome Profiling and Functional Analysis ofAgrobacterium tumefaciensReveals a General Conserved Response to Acidic Conditions (pH 5.5) and a Complex Acid-Mediated Signaling Involved inAgrobacterium-Plant Interactions  Journal Articles
• Use of In-Biofilm Expression Technology To Identify Genes Involved in Pseudomonas aeruginosa Biofilm Development  Journal Articles
• Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants  Journal Articles
• Virulence of a Porphyromonas gingivalis W83 mutant defective in the prtH gene  Journal Articles
• Wall Teichoic Acid Polymers Are Dispensable for Cell Viability in Bacillus subtilis  Journal Articles
• Weapons of mass retraction  Journal Articles
• ndvF, a novel locus located on megaplasmid pRmeSU47b (pEXO) of Rhizobium meliloti, is required for normal nodule development  Journal Articles