RNA, Ribosomal, 16S Concept

subject area of

• Helicobacter apodemussp. nov., a newHelicobacterspecies identified from the gastrointestinal tract of striped field mice in Korea  Journal Articles
• A Multidimensional Approach to the Management of Severe Asthma: Inflammometry, Molecular Microbiology and Bronchial Thermoplasty  Journal Articles
• A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome.  Journal Articles
• A comparative assessment of molecular biological and direct microscopic techniques for assessing aquatic systems  Journal Articles
• A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis  Journal Articles
• A methods comparison for the isolation and detection of thermophilic Campylobacter in agricultural watersheds  Journal Articles
• A national investigation of the prevalence and diversity of thermophilic Campylobacter species in agricultural watersheds in Canada  Journal Articles
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Journal Articles
• A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)  Journal Articles
• A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia  Journal Articles
• A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera  Journal Articles
• A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov.  Journal Articles
• A rich meconium metabolome in human infants is associated with early-life gut microbiota composition and reduced allergic sensitization  Journal Articles
• A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades  Journal Articles
• Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities  Journal Articles
• Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity  Journal Articles
• Alterations in fecal β-defensin-3 secretion as a marker of instability of the gut microbiota  Journal Articles
• Altered Gut Microbiome Composition and Function Are Associated With Gut Barrier Dysfunction in Healthy Relatives of Patients With Crohn’s Disease  Journal Articles
• Altered microbiomes of aquatic macroinvertebrates and riparian spiders downstream of municipal wastewater effluents  Journal Articles
• Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small‐scale reproducibility  Journal Articles
• Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain  Journal Articles
• Analytical Sensitivity, Reproducibility of Results, and Clinical Performance of Five PCR Assays for Detecting Chlamydia pneumoniae DNA in Peripheral Blood Mononuclear Cells  Journal Articles
• Antagonistic Bacterial Interactions Help Shape Host-Symbiont Dynamics within the Fungus-Growing Ant-Microbe Mutualism  Journal Articles
• Antibiotic resistance is ancient  Journal Articles
• Antimicrobial Activity of Actinobacteria Isolated From the Guts of Subterranean Termites  Journal Articles
• AppIndels.com server: a web-based tool for the identification of known taxon-specific conserved signature indels in genome sequences. Validation of its usefulness by predicting the taxonomic affiliation of >700 unclassified strains of Bacillus species  Journal Articles
• Application of high-throughput 16S rRNA sequencing to identify fecal contamination sources and to complement the detection of fecal indicator bacteria in rural groundwater  Journal Articles
• Application of leftover sample material from waterborne protozoa monitoring for the molecular detection of Bacteroidales and fecal source tracking markers  Journal Articles
• Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions  Journal Articles
• Aryl hydrocarbon receptor ligand production by the gut microbiota is decreased in celiac disease leading to intestinal inflammation  Journal Articles
• Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections  Journal Articles
• Azithromycin and the microbiota of cystic fibrosis sputum  Journal Articles
• Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit  Journal Articles
• Bacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment  Journal Articles
• Biogeographic Variation and Functional Pathways of the Gut Microbiota in Celiac Disease  Journal Articles
• Bioinformatic evaluation of the secondary metabolism of antistaphylococcal environmental bacterial isolates  Journal Articles
• Biophysiological and factorial analyses in the treatment of rural domestic wastewater using multi-soil-layering systems  Journal Articles
• Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis  Journal Articles
• Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers’ Milk and the Infant Gut: the CHILD Cohort Study  Journal Articles
• Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling  Journal Articles
• Capturing the diversity of the human milk microbiota through culture-enriched molecular profiling: a feasibility study  Journal Articles
• Changes in gut microbiota during development of compulsive checking and locomotor sensitization induced by chronic treatment with the dopamine agonist quinpirole  Journal Articles
• Changes in the gut microbiome associated with infliximab in patients with bipolar disorder  Journal Articles
• Characteristics of Abdominal Visceral Adipose Tissue, Metabolic Health and the Gut Microbiome in Adults  Journal Articles
• Characterization ofStreptococcus milleriGroup Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis  Journal Articles
• Commensal microbiota induces colonic barrier structure and functions that contribute to homeostasis  Journal Articles
• Comparative characterization of the infant gut microbiome and their maternal lineage by a multi-omics approach  Journal Articles
• Comparison of Gull Feces-Specific Assays Targeting the 16S rRNA Genes of Catellicoccus marimammalium and Streptococcus spp  Journal Articles
• Comparison of biochemical and genotypic speciation methods for vancomycin-resistant enterococci isolated from urban wastewater treatment plants  Journal Articles
• Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils  Journal Articles
• Comparison of fecal biota from specific pathogen free and feral mice  Journal Articles
• Comparison of in-house and commercial 16S rRNA sequencing with high-performance liquid chromatography and genotype AS and CM for identification of nontuberculous mycobacteria  Journal Articles
• Comparison of the microbial communities of alpacas and sheep fed diets with three different ratios of corn stalk to concentrate  Journal Articles
• Comparison of two poultry litter qPCR assays targeting the 16S rRNA gene of Brevibacterium sp.  Journal Articles
• Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools  Journal Articles
• Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification  Journal Articles
• Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria  Journal Articles
• Convergence of gut microbiomes in myrmecophagous mammals  Journal Articles
• Critical Issues in Bacterial Phylogeny  Journal Articles
• Crohn’s disease proteolytic microbiota enhances inflammation through PAR2 pathway in gnotobiotic mice  Journal Articles
• Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome  Journal Articles
• Culture and Molecular Profiling of the Respiratory Tract Microbiota  Journal Articles
• Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age  Journal Articles
• Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities  Journal Articles
• Deciphering the pathogenesis of NSAID enteropathy using proton pump inhibitors and a hydrogen sulfide-releasing NSAID  Journal Articles
• Delivery mode, birth order, and sex impact neonatal microbial colonization.  Journal Articles
• Detection of Clinically Relevant Genotypes of Vancomycin-Resistant Enterococci in Nosocomial Surveillance Specimens by PCR  Journal Articles
• Development of Real-Time PCR Assays for Detection of the Streptococcus milleri Group from Cystic Fibrosis Clinical Specimens by Targeting the cpn60 and 16S rRNA Genes  Journal Articles
• Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region  Journal Articles
• Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds  Journal Articles
• Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood  Journal Articles
• Differences in cecal microbiome of selected high and low feather-pecking laying hens  Journal Articles
• Differences of small intestinal bacteria populations in adults and children with/without celiac disease: Effect of age, gluten diet, and disease  Journal Articles
• Direct and culture-enriched 16S rRNA sequencing of cecal content of healthy horses and horses with typhlocolitis  Journal Articles
• Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)  Journal Articles
• Disturbance–diversity relationships of microbial communities change based on growth substrate  Journal Articles
• Diurnal Floc Generation from Neuston Biofilms in Two Contrasting Freshwater Lakes  Journal Articles
• Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)  Journal Articles
• Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717)  Journal Articles
• Ecological Genomics of Marine Roseobacters  Journal Articles
• Effect of Incubation Temperature on the Detection of Thermophilic Campylobacter Species from Freshwater Beaches, Nearby Wastewater Effluents, and Bird Fecal Droppings  Journal Articles
• Effect of biodiesel addition on microbial community structure in a simulated fuel storage system  Journal Articles
• Effects of Cadmium Stress on Bacterial and Fungal Communities in the Whitefly Bemisia tabaci  Journal Articles
• Effects of chronic metal exposure and metamorphosis on the microbiomes of larval and adult insects and riparian spiders through the aquatic-riparian food web.  Journal Articles
• Effects of municipal wastewater effluents on the invertebrate microbiomes of an aquatic-riparian food web.  Journal Articles
• Endometrial microbiota is more diverse in people with endometriosis than symptomatic controls  Journal Articles
• Endometriosis and the microbiome: a systematic review  Journal Articles
• Environmental Factors Associated with Risk of Crohn’s Disease Development in the Crohn’s and Colitis Canada - Genetic, Environmental, Microbial Project  Journal Articles
• Eradication of Helicobacter spp. from a rat breeding colony.  Journal Articles
• Evaluation of the NucliSens Basic Kit for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in Genital Tract Specimens Using Nucleic Acid Sequence-Based Amplification of 16S rRNA  Journal Articles
• Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression  Journal Articles
• Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm  Journal Articles
• Exploring the Potential for Actinobacteria as Defensive Symbionts in Fungus-Growing Termites  Journal Articles
• Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios  Journal Articles
• Fate of Cd during Microbial Fe(III) Mineral Reduction by a Novel and Cd-Tolerant Geobacter Species  Journal Articles
• First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins  Journal Articles
• Fluctuations in populations of subsurface methane oxidizers in coordination with changes in electron acceptor availability  Journal Articles
• Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.  Journal Articles
• Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov.  Journal Articles
• Gut Microbiome Patterns Associated With Treatment Response in Patients With Major Depressive Disorder: Changements du microbiote intestinal associés à la réponse au traitement chez des patients souffrant de trouble dépressif majeur  Journal Articles
• Gut microbiota dysbiosis in patients with hepatitis B virus-induced chronic liver disease covering chronic hepatitis, liver cirrhosis and hepatocellular carcinoma.  Journal Articles
• Gut microbiota impairs insulin clearance in obese mice  Journal Articles
• Healthy First-Degree Relatives From Multiplex Families vs Simplex Families Have Higher Subclinical Intestinal Inflammation, a Distinct Fecal Microbial Signature, and Harbor a Higher Risk of Developing Crohn's Disease.  Journal Articles
• High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters  Journal Articles
• High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant  Journal Articles
• High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production  Journal Articles
• Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study  Journal Articles
• Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor  Journal Articles
• Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups  Journal Articles
• Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility  Journal Articles
• Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification  Journal Articles
• Impact ofβ2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults  Journal Articles
• Industrial and Ruminant Trans-Fatty Acids-Enriched Diets Differentially Modulate the Microbiome and Fecal Metabolites in C57BL/6 Mice  Journal Articles
• Infant Vitamin D Supplements, Fecal Microbiota and Their Metabolites at 3 Months of Age in the CHILD Study Cohort  Journal Articles
• Infant gut microbiota and food sensitization: associations in the first year of life  Journal Articles
• Infants’ First Solid Foods: Impact on Gut Microbiota Development in Two Intercontinental Cohorts  Journal Articles
• Inflammation-related differences in mucosa-associated microbiota and intestinal barrier function in colonic Crohn’s disease  Journal Articles
• Influence of Environmental and Genetic Factors Linked to Celiac Disease Risk on Infant Gut Colonization by Bacteroides Species  Journal Articles
• Interaction between Workers during a Short Time Window Is Required for Bacterial Symbiont Transmission in Acromyrmex Leaf-Cutting Ants  Journal Articles
• Intestinal Microbial Composition of Children in a Randomized Controlled Trial of Probiotics to Treat Acute Gastroenteritis  Journal Articles
• Intestinal microbiota in functional bowel disorders: a Rome foundation report  Journal Articles
• Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites  Journal Articles
• Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production  Journal Articles
• Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model  Journal Articles
• Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity  Journal Articles
• Leveraging the microbiome to understand clinical heterogeneity in depression: findings from the T-RAD study  Journal Articles
• Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods  Journal Articles
• Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach  Journal Articles
• Maternal smoking during pregnancy increases the risk of gut microbiome-associated childhood overweight and obesity  Journal Articles
• Measuring the microbiome of chronic wounds with use of a topical antimicrobial dressing – A feasibility study  Journal Articles
• Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens  Journal Articles
• Microbe and host interaction in gastrointestinal homeostasis  Journal Articles
• Microbe-Immune Crosstalk: Evidence That T Cells Influence the Development of the Brain Metabolome  Journal Articles
• Microbial Diversity and Host-Specific Sequences of Canada Goose Feces  Journal Articles
• Microbial source tracking and spatial analysis of E. coli contaminated private well waters in southeastern Ontario  Journal Articles
• Microbiota and host determinants of behavioural phenotype in maternally separated mice  Journal Articles
• Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt  Journal Articles
• Microbiota‐immune alterations in adolescents following early life adversity: A proof of concept study  Journal Articles
• Minimal changes in microbial abundances and diversity of 7 years of emplacement for modules of compacted bentonite exposed to natural groundwater  Journal Articles
• Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities  Journal Articles
• Molecular analysis of a 11 700‐year‐old rodent midden from the Atacama Desert, Chile  Journal Articles
• Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus  Journal Articles
• Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia  Journal Articles
• Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.  Journal Articles
• Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae  Journal Articles
• Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds  Journal Articles
• Mouse models for mitochondrial disease  Journal Articles
• Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease  Journal Articles
• Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment  Journal Articles
• Nutritional profile of rodent diets impacts experimental reproducibility in microbiome preclinical research  Journal Articles
• Oral treatment with Lactobacillus rhamnosus attenuates behavioural deficits and immune changes in chronic social stress  Journal Articles
• Oral, Vaginal, and Stool Microbial Signatures in Patients With Endometriosis as Potential Diagnostic Non-Invasive Biomarkers: A Prospective Cohort Study.  Journal Articles
• Outcomes Following Acute Severe Colitis at Initial Presentation: A Multi-centre, Prospective, Paediatric Cohort Study  Journal Articles
• PCB exposure is associated with reduction of endosymbionts in riparian spider microbiomes  Journal Articles
• Patterns of Bacterial Gene Movement  Journal Articles
• Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces  Journal Articles
• Phylogenetic analysis of mutualistic filamentous bacteria associated with fungus-growing ants  Journal Articles
• Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.  Journal Articles
• Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera  Journal Articles
• Phylogenomic Studies and Molecular Markers Studies Clarifying the Evolutionary Relationships and Classification of Pseudalkalibacillus species: Proposal for the family Guptaeabacillaceae fam. nov. harboring the genera Guptaeabacillus gen. nov. and Exobacillus gen. nov.  Journal Articles
• Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.  Journal Articles
• Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.  Journal Articles
• Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera  Journal Articles
• Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov.  Journal Articles
• Phylogenomic and molecular marker based studies to clarify the evolutionary relationships amongst Anoxybacillus species and demarcation of the family Anoxybacillaceae and some of its constituent genera.  Journal Articles
• Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov.  Journal Articles
• Phylogenomic and molecular markers based studies on clarifying the evolutionary relationships among Peptoniphilus species. Identification of several Genus-Level clades of Peptoniphilus species and transfer of some Peptoniphilus species to the genus Aedoeadaptatus  Journal Articles
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Journal Articles
• Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov.  Journal Articles
• Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades  Journal Articles
• Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov.  Journal Articles
• Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana  Journal Articles
• Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet  Journal Articles
• Prenatal vitamin C and fish oil supplement use are associated with human milk microbiota composition in the Canadian CHILD Cohort Study.  Journal Articles
• Presence of Archaea in the Indoor Environment and Their Relationships with Housing Characteristics  Journal Articles
• Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada  Journal Articles
• Psoriasis Is Associated With Elevated Gut IL-1α and Intestinal Microbiome Alterations  Journal Articles
• Pyrosequencing reveals the complex polymicrobial nature of invasive pyogenic infections: microbial constituents of empyema, liver abscess, and intracerebral abscess  Journal Articles
• Quantitation of Chlamydia trachomatis 16S rRNA Using NASBA Amplification and a Bioluminescent Microtiter Plate Assay  Journal Articles
• Rainbow darter (Etheostoma caeruleum) from a river impacted by municipal wastewater effluents have altered gut content microbiomes  Journal Articles
• Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus  Journal Articles
• Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis  Journal Articles
• Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women  Journal Articles
• Ribosome biogenesis; the KsgA protein throws a methyl‐mediated switch in ribosome assembly  Journal Articles
• Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species  Journal Articles
• Robust demarcation of the family Peptostreptococcaceae and its main genera based on phylogenomic studies and taxon-specific molecular markers  Journal Articles
• Signature proteins that are distinctive of alpha proteobacteria  Journal Articles
• Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation  Journal Articles
• Sources of microbial contamination in the watershed and coastal zone of Soufriere, St. Lucia  Journal Articles
• Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria  Journal Articles
• Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory  Journal Articles
• Stable microbial community in compacted bentonite after 5 years of exposure to natural granitic groundwater  Journal Articles
• Study of duodenal bacterial communities by 16S rRNA gene analysis in adults with active celiac disease vs non-celiac disease controls  Journal Articles
• Sub-communities of the vaginal microbiota in pregnant and non-pregnant women  Journal Articles
• Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants  Journal Articles
• Systematic review: effect of probiotics on antibiotic-induced microbiome disruption.  Journal Articles
• The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years  Journal Articles
• The Evolving Facets of Bacterial Vaginosis: Implications for HIV Transmission  Journal Articles
• The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly  Journal Articles
• The Relationship Between Diet, Gut Microbiota, and Serum Metabolome of South Asian Infants at 1 Year  Journal Articles
• The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients  Journal Articles
• The effects of inhaled aztreonam on the cystic fibrosis lung microbiome  Journal Articles
• The genus Prevotella in cystic fibrosis airways  Journal Articles
• The gut microbiome and inflammation in obsessive‐compulsive disorder patients compared to age‐ and sex‐matched controls: a pilot study  Journal Articles
• The impact of dietary fermentable carbohydrates on a postinflammatory model of irritable bowel syndrome  Journal Articles
• The influence of the Doce River mouth on the microbiome of nearby coastal areas three years after the Fundão Dam failure, Brazil  Journal Articles
• The murine female intestinal microbiota does not shift throughout the estrous cycle  Journal Articles
• The use of E. coli phylogrouping and microbial source tracking (non-species specific, human-specific, bovine-specific bacteroidales markers) to elucidate hydro(geo)logical contamination mechanisms in southeastern Ontario, Canada.  Journal Articles
• Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples  Journal Articles
• Ultrastructural and microbial analyses of cellulose degradation in leaf-cutter ant colonies  Journal Articles
• [Soil microbial diversity of artificial peashrub plantation on North Loess Plateau of China].  Journal Articles