RNA, Ribosomal, 16S Concept

subject area of

• A Multidimensional Approach to the Management of Severe Asthma: Inflammometry, Molecular Microbiology and Bronchial Thermoplasty  Academic Article
• A comparative assessment of molecular biological and direct microscopic techniques for assessing aquatic systems  Academic Article
• A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis  Academic Article
• A methods comparison for the isolation and detection of thermophilic Campylobacter in agricultural watersheds  Academic Article
• A national investigation of the prevalence and diversity of thermophilic Campylobacter species in agricultural watersheds in Canada  Academic Article
• A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.  Academic Article
• A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)  Academic Article
• A phylogenomic and molecular markers based analysis of the phylum Chlamydiae: proposal to divide the class Chlamydiia into two orders, Chlamydiales and Parachlamydiales ord. nov., and emended description of the class Chlamydiia  Academic Article
• A phylogenomic and molecular markers based taxonomic framework for members of the order Entomoplasmatales: proposal for an emended order Mycoplasmatales containing the family Spiroplasmataceae and emended family Mycoplasmataceae comprised of six genera  Academic Article
• A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam nov.  Academic Article
• A rich meconium metabolome in human infants is associated with early-life gut microbiota composition and reduced allergic sensitization  Academic Article
• A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades  Academic Article
• Adaptive Radiation and Ecological Opportunity in Sulawesi and Philippine Fanged Frog (Limnonectes) Communities  Academic Article
• Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity  Academic Article
• Altered Gut Microbiome Composition and Function Are Associated With Gut Barrier Dysfunction in Healthy Relatives of Patients With Crohn’s Disease  Academic Article
• Altered microbiomes of aquatic macroinvertebrates and riparian spiders downstream of municipal wastewater effluents  Academic Article
• Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small‐scale reproducibility  Academic Article
• Analysis of the legume-rhizobia symbiosis in shrubs from central western Spain  Academic Article
• Analytical Sensitivity, Reproducibility of Results, and Clinical Performance of Five PCR Assays for Detecting Chlamydia pneumoniae DNA in Peripheral Blood Mononuclear Cells  Academic Article
• Antibiotic resistance is ancient  Academic Article
• Application of high-throughput 16S rRNA sequencing to identify fecal contamination sources and to complement the detection of fecal indicator bacteria in rural groundwater  Academic Article
• Application of leftover sample material from waterborne protozoa monitoring for the molecular detection of Bacteroidales and fecal source tracking markers  Academic Article
• Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions  Academic Article
• Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters  Academic Article
• Aryl hydrocarbon receptor ligand production by the gut microbiota is decreased in celiac disease leading to intestinal inflammation  Academic Article
• Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections  Academic Article
• Association of gut microbiome with fasting triglycerides, fasting insulin and obesity status in Mexican children  Academic Article
• Azithromycin and the microbiota of cystic fibrosis sputum  Academic Article
• Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit  Academic Article
• Bacterial biogeography of the human digestive tract  Academic Article
• Bacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment  Academic Article
• Biogeographic Variation and Functional Pathways of the Gut Microbiota in Celiac Disease  Academic Article
• Bioinformatic evaluation of the secondary metabolism of antistaphylococcal environmental bacterial isolates  Academic Article
• Biophysiological and factorial analyses in the treatment of rural domestic wastewater using multi-soil-layering systems  Academic Article
• Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis  Academic Article
• Breastmilk Feeding Practices Are Associated with the Co-Occurrence of Bacteria in Mothers’ Milk and the Infant Gut: the CHILD Cohort Study  Academic Article
• Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling  Academic Article
• Capturing the diversity of the human milk microbiota through culture-enriched molecular profiling: a feasibility study  Academic Article
• Changes in gut microbiota during development of compulsive checking and locomotor sensitization induced by chronic treatment with the dopamine agonist quinpirole  Academic Article
• Changes in the gut microbiome associated with infliximab in patients with bipolar disorder  Academic Article
• Characterization of Streptococcus milleri Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis  Academic Article
• Commensal microbiota induces colonic barrier structure and functions that contribute to homeostasis  Academic Article
• Comparison of Gull Feces-Specific Assays Targeting the 16S rRNA Genes of Catellicoccus marimammalium and Streptococcus spp  Academic Article
• Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils  Academic Article
• Comparison of fecal biota from specific pathogen free and feral mice  Academic Article
• Comparison of in-house and commercial 16S rRNA sequencing with high-performance liquid chromatography and genotype AS and CM for identification of nontuberculous mycobacteria  Academic Article
• Comparison of the microbial communities of alpacas and sheep fed diets with three different ratios of corn stalk to concentrate  Academic Article
• Comparison of two poultry litter qPCR assays targeting the 16S rRNA gene of Brevibacterium sp.  Academic Article
• Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools  Academic Article
• Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification  Academic Article
• Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria  Academic Article
• Convergence of gut microbiomes in myrmecophagous mammals  Academic Article
• Critical Issues in Bacterial Phylogeny  Academic Article
• Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome  Academic Article
• Culture and Molecular Profiling of the Respiratory Tract Microbiota  Academic Article
• Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age  Academic Article
• Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities  Academic Article
• Deciphering the pathogenesis of NSAID enteropathy using proton pump inhibitors and a hydrogen sulfide-releasing NSAID  Academic Article
• Detection of Clinically Relevant Genotypes of Vancomycin-Resistant Enterococci in Nosocomial Surveillance Specimens by PCR  Academic Article
• Development of Real-Time PCR Assays for Detection of the Streptococcus milleri Group from Cystic Fibrosis Clinical Specimens by Targeting the cpn60 and 16S rRNA Genes  Academic Article
• Development of a novel triplex PCR assay for the detection and differentiation of thermophilic species of Campylobacter using 16S-23S rDNA internal transcribed spacer (ITS) region  Academic Article
• Development of a rapid quantitative PCR assay for direct detection and quantification of culturable and non-culturable Escherichia coli from agriculture watersheds  Academic Article
• Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood  Academic Article
• Differences in cecal microbiome of selected high and low feather-pecking laying hens  Academic Article
• Differences of small intestinal bacteria populations in adults and children with/without celiac disease: Effect of age, gluten diet, and disease  Academic Article
• Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)  Academic Article
• Diurnal Floc Generation from Neuston Biofilms in Two Contrasting Freshwater Lakes  Academic Article
• Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries)  Academic Article
• Division of the genus Borrelia into two genera (corresponding to Lyme disease and relapsing fever groups) reflects their genetic and phenotypic distinctiveness and will lead to a better understanding of these two groups of microbes (Margos et al. (2016) There is inadequate evidence to support the division of the genus Borrelia. Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.001717)  Academic Article
• Ecological Genomics of Marine Roseobacters  Academic Article
• Effect of Incubation Temperature on the Detection of Thermophilic Campylobacter Species from Freshwater Beaches, Nearby Wastewater Effluents, and Bird Fecal Droppings  Academic Article
• Effect of biodiesel addition on microbial community structure in a simulated fuel storage system  Academic Article
• Endometrial microbiota is more diverse in people with endometriosis than symptomatic controls  Academic Article
• Endometriosis and the microbiome: a systematic review  Academic Article
• Eradication of Helicobacter spp. from a rat breeding colony.  Academic Article
• Evaluation of the NucliSens Basic Kit for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in Genital Tract Specimens Using Nucleic Acid Sequence-Based Amplification of 16S rRNA  Academic Article
• Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm  Academic Article
• Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios  Academic Article
• Fate of Cd during Microbial Fe(III) Mineral Reduction by a Novel and Cd-TolerantGeobacterSpecies  Academic Article
• First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins  Academic Article
• Fluctuations in populations of subsurface methane oxidizers in coordination with changes in electron acceptor availability  Academic Article
• Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads  Academic Article
• Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.  Academic Article
• Genome-based taxonomic framework for the class Negativicutes: division of the class Negativicutes into the orders Selenomonadales emend., Acidaminococcales ord. nov. and Veillonellales ord. nov.  Academic Article
• Gut Microbiome Patterns Associated With Treatment Response in Patients With Major Depressive Disorder: Changements du microbiote intestinal associés à la réponse au traitement chez des patients souffrant de trouble dépressif majeur  Academic Article
• Gut microbiota impairs insulin clearance in obese mice  Academic Article
• High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters  Academic Article
• High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant  Academic Article
• High salt diet exacerbates colitis in mice by decreasing Lactobacillus levels and butyrate production  Academic Article
• Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study  Academic Article
• Identification of a Novel Group of Bacteria in Sludge from a Deteriorated Biological Phosphorus Removal Reactor  Academic Article
• Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups  Academic Article
• Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility  Academic Article
• Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification  Academic Article
• Impact ofβ2-1 fructan on faecal community change: results from a placebo-controlled, randomised, double-blinded, cross-over study in healthy adults  Academic Article
• Infant Vitamin D Supplements, Fecal Microbiota and Their Metabolites at 3 Months of Age in the CHILD Study Cohort  Academic Article
• Infant gut microbiota and food sensitization: associations in the first year of life  Academic Article
• Infants’ First Solid Foods: Impact on Gut Microbiota Development in Two Intercontinental Cohorts  Academic Article
• Inflammation-related differences in mucosa-associated microbiota and intestinal barrier function in colonic Crohn’s disease  Academic Article
• Influence of Environmental and Genetic Factors Linked to Celiac Disease Risk on Infant Gut Colonization by Bacteroides Species  Academic Article
• Intestinal Microbial Composition of Children in a Randomized Controlled Trial of Probiotics to Treat Acute Gastroenteritis  Academic Article
• Intestinal microbiota in functional bowel disorders: a Rome foundation report  Academic Article
• Isolation and Characterization of Novel Marine-Derived Actinomycete Taxa Rich in Bioactive Metabolites  Academic Article
• Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production  Academic Article
• Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity  Academic Article
• Microbe and host interaction in gastrointestinal homeostasis  Academic Article
• Microbe-Immune Crosstalk: Evidence That T Cells Influence the Development of the Brain Metabolome  Academic Article
• Microbial Diversity and Host-Specific Sequences of Canada Goose Feces  Academic Article
• Microbiota and host determinants of behavioural phenotype in maternally separated mice  Academic Article
• Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt  Academic Article
• Microbiota‐immune alterations in adolescents following early life adversity: A proof of concept study  Academic Article
• Molecular analysis of a 11 700-year-old rodent midden from the Atacama Desert, Chile  Academic Article
• Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus  Academic Article
• Molecular signatures for members of the genus Dehalococcoides and the class Dehalococcoidia  Academic Article
• Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.  Academic Article
• Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae  Academic Article
• Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds  Academic Article
• Mouse models for mitochondrial disease  Academic Article
• Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease  Academic Article
• Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment  Academic Article
• Nutritional profile of rodent diets impacts experimental reproducibility in microbiome preclinical research  Academic Article
• Oral treatment with Lactobacillus rhamnosus attenuates behavioural deficits and immune changes in chronic social stress  Academic Article
• Patterns of Bacterial Gene Movement  Academic Article
• Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces  Academic Article
• Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.  Academic Article
• Phylogenetic framework for the phylum Tenericutes based on genome sequence data: proposal for the creation of a new order Mycoplasmoidales ord. nov., containing two new families Mycoplasmoidaceae fam. nov. and Metamycoplasmataceae fam. nov. harbouring Eperythrozoon, Ureaplasma and five novel genera  Academic Article
• Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of Leuconostocaceae species: identification of molecular signatures specific for the genera Leuconostoc, Fructobacillus and Oenococcus and proposal for a novel genus Periweissella gen. nov.  Academic Article
• Phylogenomic and comparative genomic analyses of species of the family Pseudomonadaceae: Proposals for the genera Halopseudomonas gen. nov. and Atopomonas gen. nov., merger of the genus Oblitimonas with the genus Thiopseudomonas, and transfer of some misclassified species of the genus Pseudomonas into other genera  Academic Article
• Phylogenomic and comparative genomic studies robustly demarcate two distinct clades of Pseudomonas aeruginosa strains: proposal to transfer the strains from an outlier clade to a novel species Pseudomonas paraeruginosa sp. nov.  Academic Article
• Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.  Academic Article
• Phylogenomics and molecular signatures support division of the order Neisseriales into emended families Neisseriaceae and Chromobacteriaceae and three new families Aquaspirillaceae fam. nov., Chitinibacteraceae fam. nov., and Leeiaceae fam. nov.  Academic Article
• Phylogeny and molecular signatures for the phylum Fusobacteria and its distinct subclades  Academic Article
• Phylogeny of Helicobacter Isolates from Bird and Swine Feces and Description of Helicobacter pametensis sp. nov.  Academic Article
• Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana  Academic Article
• Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet  Academic Article
• Presence of Archaea in the Indoor Environment and Their Relationships with Housing Characteristics  Academic Article
• Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada  Academic Article
• Psoriasis Is Associated With Elevated Gut IL-1α and Intestinal Microbiome Alterations  Academic Article
• Pyrosequencing reveals the complex polymicrobial nature of invasive pyogenic infections: microbial constituents of empyema, liver abscess, and intracerebral abscess  Academic Article
• Quantitation of Chlamydia trachomatis 16S rRNA Using NASBA Amplification and a Bioluminescent Microtiter Plate Assay  Academic Article
• Rainbow darter (Etheostoma caeruleum) from a river impacted by municipal wastewater effluents have altered gut content microbiomes  Academic Article
• Ramichloridium endophyticum sp. nov., a novel species of endophytic fungus from Potamogeton pectinatus  Academic Article
• Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis  Academic Article
• Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women  Academic Article
• Ribosome biogenesis; the KsgA protein throws a methyl-mediated switch in ribosome assembly  Academic Article
• Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species  Academic Article
• Signature proteins that are distinctive of alpha proteobacteria  Academic Article
• Soil pH is equally important as salinity in shaping bacterial communities in saline soils under halophytic vegetation  Academic Article
• Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory  Academic Article
• Study of duodenal bacterial communities by 16S rRNA gene analysis in adults with active celiac disease vs non-celiac disease controls  Academic Article
• The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years  Academic Article
• The Evolving Facets of Bacterial Vaginosis: Implications for HIV Transmission  Academic Article
• The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly  Academic Article
• The Relationship Between Diet, Gut Microbiota, and Serum Metabolome of South Asian Infants at 1 Year  Academic Article
• The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients  Academic Article
• The effects of inhaled aztreonam on the cystic fibrosis lung microbiome  Academic Article
• The genus Prevotella in cystic fibrosis airways  Academic Article
• The gut microbiome and inflammation in obsessive‐compulsive disorder patients compared to age‐ and sex‐matched controls: a pilot study  Academic Article
• The impact of dietary fermentable carbohydrates on a postinflammatory model of irritable bowel syndrome  Academic Article
• The influence of the Doce River mouth on the microbiome of nearby coastal areas three years after the Fundão Dam failure, Brazil  Academic Article
• The murine female intestinal microbiota does not shift throughout the estrous cycle  Academic Article
• [Soil microbial diversity of artificial peashrub plantation on North Loess Plateau of China].  Academic Article