Nucleic Acids Research (NAR)
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Making target sites in large structured RNAs accessible to RNA-cleaving DNAzymes through hybridization with synthetic DNA oligonucleotides..
52:11177-11187.
2024
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CSB and SMARCAL1 compete for RPA32 at stalled forks and differentially control the fate of stalled forks in BRCA2-deficient cells.
52:5067-5087.
2024
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Structure-specific roles for PolG2–DNA complexes in maintenance and replication of mitochondrial DNA.
51:9716-9732.
2023
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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.
51:D690-D699.
2023
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The Mycobacterium tuberculosis Ku C-terminus is a multi-purpose arm for binding DNA and LigD and stimulating ligation.
50:11040-11057.
2022
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vRhyme enables binning of viral genomes from metagenomes.
50:e83-e83.
2022
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Cockayne syndrome group B protein regulates fork restart, fork progression and MRE11-dependent fork degradation in BRCA1/2-deficient cells.
49:12836-12854.
2021
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Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library.
49:7267-7279.
2021
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Mechanisms coordinating ribosomal protein gene transcription in response to stress.
48:11408-11420.
2020
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Evolution of a highly functional circular DNA aptamer in serum.
48:10680-10690.
2020
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.
48:D517-D525.
2020
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CSB interacts with BRCA1 in late S/G2 to promote MRN- and CtIP-mediated DNA end resection.
47:10678-10692.
2019
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RNA polymerase II-independent recruitment of SPT6L at transcription start sites in Arabidopsis.
47:6714-6725.
2019
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AnnoTree: visualization and exploration of a functionally annotated microbial tree of life.
47:4442-4448.
2019
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TRF2 positively regulates SULF2 expression increasing VEGF-A release and activity in tumor microenvironment.
47:3365-3382.
2019
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A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease.
46:7772-7792.
2018
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PRISM 3: expanded prediction of natural product chemical structures from microbial genomes.
45:W49-W54.
2017
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CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.
45:D566-D573.
2017
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YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit.
44:8442-8455.
2016
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ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
44:D808-D818.
2016
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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM).
43:gkv1012-gkv1012.
2015
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IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1..
43:W104-W108.
2015
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Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP.
42:5059-5071.
2014
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Phosphorylated (pT371)TRF1 is recruited to sites of DNA damage to facilitate homologous recombination and checkpoint activation.
41:10268-10282.
2013
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The heterochromatic chromosome caps in great apes impact telomere metabolism.
41:4792-4801.
2013
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A novel nucleoid-associated protein specific to the actinobacteria.
41:4171-4184.
2013
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Cockayne Syndrome group B protein interacts with TRF2 and regulates telomere length and stability.
40:9661-9674.
2012
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ATM regulates proteasome-dependent subnuclear localization of TRF1, which is important for telomere maintenance.
40:3975-3989.
2012
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A human XRCC4–XLF complex bridges DNA.
40:1868-1878.
2012
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XRCC4's interaction with XLF is required for coding (but not signal) end joining.
40:1684-1694.
2012
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A genotype-to-phenotype map of in vitro selected RNA-cleaving DNAzymes: implications for accessing the target phenotype.
37:3545-3557.
2009
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New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains.
37:3215-3229.
2009
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DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides.
37:413-420.
2009
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Small non-coding RNAs in Streptomyces coelicolor.
36:7240-7251.
2008
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In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine–pyrimidine junctions.
36:4768-4777.
2008
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Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme.
36:1472-1481.
2008
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Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor.
36:732-741.
2008
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WormBook: the online review of Caenorhabditis elegans biology.
35:D472-D475.
2007
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A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria.
35:e46-e46.
2007
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Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates.
35:401-405.
2007
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Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis.
35:1-10.
2007
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Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria.
34:2686-2697.
2006
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Characterization of long RNA-cleaving deoxyribozymes with short catalytic cores: the effect of excess sequence elements on the outcome of in vitro selection.
34:2445-2454.
2006
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Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme.
33:7164-7175.
2005
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Rapid detection of single nucleotide polymorphisms associated with spinal muscular atrophy by use of a reusable fibre-optic biosensor.
32:18e-18.
2004
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Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.
32:537D-541.
2004
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Pathbase: a database of mutant mouse pathology.
32:512D-515.
2004
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KDBI: Kinetic Data of Bio-molecular Interactions database.
31:255-257.
2003
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OGRe: a relational database for comparative analysis of mitochondrial genomes.
31:202-206.
2003
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Tripartite molecular beacons.
30:94e-94.
2002
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The p120ctn-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides.
30:2911-2919.
2002
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Construction of a recombinant adenovirus for efficient delivery of the I-Scel yeast endonuclease to human cells and its application in the in vivo cleavage of chromosomes to expose new potential telomeres.
27:4276-4281.
1999
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Design, characterization and testing of tRNA3Lys-based hammerhead ribozymes.
27:1698-1708.
1999
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A hotspot for the Drosophila gypsy retroelement in the ovo locus.
26:4019-4025.
1998
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The Himar1 mariner transposase cloned in a recombinant adenovirus vector is functional in mammalian cells.
26:3687-3693.
1998
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Selection of novel, specific single-stranded DNA sequences by Flp, a duplex-specific DNA binding protein.
26:1329-1336.
1998
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Genome structure and gene content in protist mitochondrial DNAs.
26:865-878.
1998
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Synthesis and radioiodination of a stannyl oligodeoxyribonucleotide.
25:2897-2901.
1997
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Isolation and sequencing of gene fusions carried by λplacMu specialized transducing phage.
23:3076-3078.
1995
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The 5' flanking sequence negatively modulates the in vivo expression and in vitro transcription of a human tRNA gene.
21:4476-4482.
1993
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Order of probe and nuclear protein extract addition can determine specificity of protein — DNA complexes in tested mobility shift assays.
19:677-678.
1991
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Cloning of internal Ca pump from rabbit stomach smooth muscle.
18:4026-4026.
1990
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Nucleotide sequence of rat hsp60 (chaperonin, GroEL homolog) cDNA.
18:5309-5309.
1990
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A TaqI RFLP in Xq26–qter detected by pX301b [DXS311].
17:4422-4422.
1989
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Isolation and mapping of a polymorphic DNA sequence, DXS312, to Xq27–Xq28.
17:4421-4421.
1989
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Two PstI RFLPs in the PCCB gene on the long arm of chromosome 3.
16:2362-2362.
1988
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A polymorphic locus, D10S5, at 10q21.1.
15:5498-5498.
1987
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Nucleotide sequence heterogeneity of alpha satellite repetitive DNA: a survey of alphoid sequences from different human chromosomes.
15:7549-7569.
1987
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A TaqI RFLP In Xq26-Xqter detected by pX45h [HGMB no. DXS100h].
14:5572-5572.
1986
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Complete nucleotide and derived amino acid sequence of cDNA encoding the mitochondrial uncoupling protein of rat brown adipose tissue: lack of a mitochondrial targeting presequence.
14:4025-4035.
1986
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Molecular analysis of a deletion polymorphism in alpha satellite of human chromosome 17: evidence for homologous unequal crossing-over and subsequent fixation.
14:6915-6927.
1986
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The sequence of a cDNA done coding for a novel kallikrein from mouse submaxillary gland.
14:4823-4835.
1986
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Three RFLPs recognized by an anonymous sequence localized to 21q11.2 [HGM8 D21S72].
14:4375-4375.
1986
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pG95α1-7dIII/RI, a single copy clone at Xp11.4 which recognises a TaqI polymorphism (DXS209).
14:8693-8693.
1986
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A gene family inDrosophila melanogastercoding for trypsin-like enzymes.
13:6605-6619.
1985
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Chromosome-specific alpha satellite DNA: nucleotide sequence analysis of the 2.0 kilobasepair repeat from the human X chromosome.
13:2731-2743.
1985
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A plasmid vehicle suitable for the molecular cloning and characterization of mammalian promoters.
12:7235-7249.
1984
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Structural analysis of the three vitellogenin genes in Drosophila melanogaster.
9:1323-1338.
1981
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The role of the guanine insertion enzyme in Q-biosynthesis in Drosophila melanogaster.
5:4865-4876.
1978
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A doubtful relationship between tyrosine tRNA and suppression of the vermilion mutant in Drosophila.
4:3919-3930.
1977
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