Genome Concept

subject area of

• RNA‐sequencing profiles hippocampal gene expression in a validated model of cancer‐induced depression  Journal Articles
• A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods  Journal Articles
• A Genomic Comparison of Faster-Sex, Faster-X, and Faster-Male Evolution Between Drosophila melanogaster and Drosophila pseudoobscura  Journal Articles
• A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals  Journal Articles
• A Non-Long Terminal Repeat Retrotransposon Family Is Restricted to the Germ Line Micronucleus of the Ciliated Protozoan Tetrahymena thermophila  Journal Articles
• A Unified Model of Codon Reassignment in Alternative Genetic Codes  Journal Articles
• A comprehensive genomic history of extinct and living elephants  Journal Articles
• A genome assembly-integrated dog 1 Mb BAC microarray: a cytogenetic resource for canine cancer studies and comparative genomic analysis  Journal Articles
• A novel approach identifies new differentially methylated regions (DMRs) associated with imprinted genes  Journal Articles
• Altered mitochondrial function and genome frequency post exposure to γ-radiation and bystander factors  Journal Articles
• Ancient Whole Genome Enrichment Using Baits Built from Modern DNA  Journal Articles
• Ancient genomes reveal millet farming-related demic diffusion from the Yellow River into southwest China.  Journal Articles
• Antimicrobial resistance surveillance in the genomic age  Journal Articles
• BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species  Journal Articles
• Benefits and limitations of genome-wide association studies  Journal Articles
• Caenorhabditis briggsae Recombinant Inbred Line Genotypes Reveal Inter-Strain Incompatibility and the Evolution of Recombination  Journal Articles
• Chitinase genes ( CHIA s) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals  Journal Articles
• Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection  Journal Articles
• Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth  Journal Articles
• Complete mitochondrial genome sequence of the heart failure model of cardiomyopathic Syrian hamster ( Mesocricetus auratus )  Journal Articles
• Conserved Signatures in Protein Sequences Reliably Demarcate Different Clades of Rodents/Glires Species and Consolidate Their Evolutionary Relationships  Journal Articles
• DNA methylation analysis in constitutional disorders: Clinical implications of the epigenome  Journal Articles
• Detection of Clinically Relevant Genetic Variants in Autism Spectrum Disorder by Whole-Genome Sequencing  Journal Articles
• Distinguishing Between Mouse and Human Pluripotent Stem Cell Regulation: The Best Laid Plans of Mice and Men  Journal Articles
• Divergent Evolutionary Trajectories of Two Young, Homomorphic, and Closely Related Sex Chromosome Systems  Journal Articles
• Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus)  Journal Articles
• Divergent subgenome evolution in the allotetraploid frog Xenopus calcaratus  Journal Articles
• E-MEM: efficient computation of maximal exact matches for very large genomes  Journal Articles
• Effect of Genetic Variants Associated With Plasma Homocysteine Levels on Stroke Risk  Journal Articles
• Efficient Algorithms for Counting and Reporting Segregating Sites in Genomic Sequences  Journal Articles
• Estimating Selection Pressures from Limited Comparative Data  Journal Articles
• Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia  Journal Articles
• Evolution of Simple Sequence in Proteins  Journal Articles
• Evolution of the Largest Mammalian Genome  Journal Articles
• Evolutionary implications of the relationship between genome size and body size in flatworms and copepods  Journal Articles
• Functional genomic landscape of cancer-intrinsic evasion of killing by T cells  Journal Articles
• Gene expression endpoints following chronic waterborne copper exposure in a genomic model organism, the zebrafish, Danio rerio  Journal Articles
• Genome Sequence Resource for the Ramie Oomycete Pathogen Phytopythium vexans HF1  Journal Articles
• Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana)  Journal Articles
• Genome structure and gene content in protist mitochondrial DNAs  Journal Articles
• Genome-wide meta-analyses identify multiple loci associated with smoking behavior  Journal Articles
• Genomewide Association Studies: History, Rationale, and Prospects for Psychiatric Disorders  Journal Articles
• Genomic Dynamics of Transposable Elements in the Western Clawed Frog (Silurana tropicalis)  Journal Articles
• Genomic organization and linkage via a bidirectional promoter of the AP-3 (adaptor protein-3) mu3A and AK (adenosine kinase) genes: deletion mutants of AK in Chinese hamster cells extend into the AP-3 mu3A gene  Journal Articles
• HiTEC: accurate error correction in high-throughput sequencing data  Journal Articles
• How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish  Journal Articles
• Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins  Journal Articles
• Increased expression of p53 enhances transcription-coupled repair and global genomic repair of a UVC-damaged reporter gene in human cells  Journal Articles
• Integrated gene and species phylogenies from unaligned whole genome protein sequences  Journal Articles
• Kastor: a reference-based comparative approach for assessment and correction of gene-fragmenting errors in long-read assemblies of small genomes.  Journal Articles
• LASER: Large genome ASsembly EvaluatoR  Journal Articles
• Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals  Journal Articles
• Leveraging related health phenotypes for polygenic prediction of impulsive choice, impulsive action, and impulsive personality traits in 1534 European ancestry community adults  Journal Articles
• Lunatic Fringe-mediated Notch signaling is required for lung alveogenesis  Journal Articles
• Male sex drive and the masculinization of the genome  Journal Articles
• Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA  Journal Articles
• Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements  Journal Articles
• Molecular Hallmarks of Multiparametric Magnetic Resonance Imaging Visibility in Prostate Cancer  Journal Articles
• Mouse phenogenomics, toolbox for functional annotation of human genome  Journal Articles
• Much ado about omics: welcome to ‘the permutome’  Journal Articles
• Muscle Remodeling and the Exercise Physiology of Fish  Journal Articles
• Neurodevelopmental copy-number variants: A roadmap to improving outcomes by uniting patient advocates, researchers, and clinicians for collective impact  Journal Articles
• Neurological Proteins Are Not Enriched For Repetitive Sequences  Journal Articles
• New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog X. borealis  Journal Articles
• Nondestructive cryomicro-CT imaging enables structural and molecular analysis of human lung tissue  Journal Articles
• OGRe: a relational database for comparative analysis of mitochondrial genomes  Journal Articles
• Origins and evolution of biological novelty  Journal Articles
• OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics  Journal Articles
• PAM-flexible genome editing with an engineered chimeric Cas9  Journal Articles
• Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes  Journal Articles
• Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family  Journal Articles
• Phylogenomics and the reconstruction of the tree of life  Journal Articles
• Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate  Journal Articles
• Population genomics and subgenome evolution of the allotetraploid frog Xenopus laevis in southern Africa  Journal Articles
• Preface  Journal Articles
• Problems with Co-Funding in Canada  Journal Articles
• Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties  Journal Articles
• Quantitative Phylogenomics of Within-Species Mitogenome Variation: Monte Carlo and Non-Parametric Analysis of Phylogeographic Structure among Discrete Transatlantic Breeding Areas of Harp Seals (Pagophilus groenlandicus)  Journal Articles
• RACER: Rapid and accurate correction of errors in reads  Journal Articles
• Radiation and the regulatory landscape of neo2-Darwinism  Journal Articles
• Radiation-Induced Bystander Effects: Past History and Future Directions  Journal Articles
• Reduced Representation Genome Sequencing Suggests Low Diversity on the Sex Chromosomes of Tonkean Macaque Monkeys  Journal Articles
• Retroposed Elements and Their Flanking Regions Resolve the Evolutionary History of Xenarthran Mammals (Armadillos, Anteaters, and Sloths)  Journal Articles
• Similar Selective Factors Affect Both between-Gene and between-Exon Divergence in Drosophila  Journal Articles
• Single-Species Microarrays and Comparative Transcriptomics  Journal Articles
• The Caribou (Rangifer tarandus) Genome  Journal Articles
• The DNA methylation landscape of advanced prostate cancer  Journal Articles
• The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes  Journal Articles
• The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution  Journal Articles
• The Human Enhancer Blocker CTC-binding Factor Interacts with the Transcription Factor Kaiso  Journal Articles
• The Recovery, Interpretation and Use of Ancient Pathogen Genomes  Journal Articles
• The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes  Journal Articles
• The Response of Amino Acid Frequencies to Directional Mutation Pressure in Mitochondrial Genome Sequences Is Related to the Physical Properties of the Amino Acids and to the Structure of the Genetic Code  Journal Articles
• The advantages and disadvantages of horizontal gene transfer and the emergence of the first species  Journal Articles
• The cytochrome P450 (CYP) superfamily in cnidarians  Journal Articles
• The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans.  Journal Articles
• The inheritance of organelle genes and genomes: patterns and mechanisms  Journal Articles
• The round goby genome provides insights into mechanisms that may facilitate biological invasions  Journal Articles
• Unsupervised statistical clustering of environmental shotgun sequences  Journal Articles
• Whole-Genome SNP Association in the Horse: Identification of a Deletion in Myosin Va Responsible for Lavender Foal Syndrome  Journal Articles
• gJLS2: an R package for generalized joint location and scale analysis in X-inclusive genome-wide association studies  Journal Articles
• ‘Putting our heads together’: insights into genomic conservation between human and canine intracranial tumors  Journal Articles