selected scholarly activity
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chapters
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journal articles
- Automated cell profiling in imaging flow cytometry with annotation-efficient learning. Optics and Laser Technology. 181:111992. 2025
- Regional and Longitudinal Dynamics of Cyanobacterial Blooms/Cyanobiome and Cyanotoxin Production in the Great Lakes Area.. Toxins. 16:471. 2024
- Canadian beach cohort study: protocol of a prospective study to assess the burden of recreational water illness.. BMC International Health and Human Rights. 24:2502. 2024
- Characterization of Taxonomic and Functional Dynamics Associated with Harmful Algal Bloom Formation in Recreational Water Ecosystems. Toxins. 16:263-263. 2024
- Utilizing novel Escherichia coli‐specific conserved signature proteins for enhanced monitoring of recreational water quality. MicrobiologyOpen. 13:e1410. 2024
- Assessment of crAssphage as a human fecal source tracking marker in the lower Great Lakes. Science of the Total Environment. 912:168840-168840. 2024
- Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches. Standards in Genomic Sciences. 19:4. 2024
- Editorial: Precision vaccinology for infectious diseases. Frontiers in Immunology. 15:1400443. 2024
- Same-day Enterococcus qPCR results of recreational water quality at two Toronto beaches provide added public health protection and reduced beach days lost. Canadian Journal of Public Health. 114:676-687. 2023
- Application of Same-Day Enterococcus qPCR-Based Analyses for Quality Assessment of Shorelines (Water and Sand) at Recreational Beaches. Water (Switzerland). 15:2338-2338. 2023
- Cyanobacterial Algal Bloom Monitoring: Molecular Methods and Technologies for Freshwater Ecosystems. Microorganisms. 11:851-851. 2023
- Comparative Analysis of Metagenomic (Amplicon and Shotgun) DNA Sequencing to Characterize Microbial Communities in Household On-Site Wastewater Treatment Systems. Water (Switzerland). 15:271-271. 2023
- Editorial: Role of transcription factors and sigma factors in bacterial stress physiology. Frontiers in Microbiology. 14:1291172. 2023
- Metabolomics of infectious diseases in the era of personalized medicine. Frontiers in Molecular Biosciences. 10:1120376. 2023
- Phylogenomic Analyses and Molecular Signatures Elucidating the Evolutionary Relationships amongst the Chlorobia and Ignavibacteria Species: Robust Demarcation of Two Family-Level Clades within the Order Chlorobiales and Proposal for the Family Chloroherpetonaceae fam. nov. Microorganisms. 10:1312-1312. 2022
- Validation of qPCR method for enterococci quantification at Toronto beaches: Application for rapid recreational water monitoring. Journal of Great Lakes Research. 48:707-716. 2022
- Comparative Metagenomics of Anaerobic Digester Communities Reveals Sulfidogenic and Methanogenic Microbial Subgroups in Conventional and Plug Flow Residential Septic Tank Systems. Processes. 10:436-436. 2022
- Editorial: Metabolomics in Infectious Diseases. Frontiers in Genetics. 13:875835. 2022
- Biological Indicators for Fecal Pollution Detection and Source Tracking: A Review. Processes. 9:2058-2058. 2021
- Dual-Modality Imaging Microfluidic Cytometer for Onsite Detection of Phytoplankton. Photonics. 8:435-435. 2021
- The Winged Helix Domain of CSB Regulates RNAPII Occupancy at Promoter Proximal Pause Sites. International Journal of Molecular Sciences. 22:3379-3379. 2021
- Function, Evolution, and Composition of the RpoS Regulon in Escherichia coli. Frontiers in Microbiology. 11:560099. 2020
- High-throughput DNA sequencing technologies for water and wastewater analysis. Science Progress. 102:351-376. 2019
- Application of high-throughput 16S rRNA sequencing to identify fecal contamination sources and to complement the detection of fecal indicator bacteria in rural groundwater. Journal of Water and Health. 17:393-403. 2019
- Temporal and spatial changes in bacterial diversity in mixed use watersheds of the Great Lakes region. Journal of Great Lakes Research. 45:109-118. 2019
- Polydopamine–polyethylene glycol–albumin antifouling coatings on multiple substrates. Journal of Materials Chemistry B. 6:940-949. 2018
- Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens. Water Research. 115:360-369. 2017
- A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 107:467-485. 2015
- Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis. Frontiers in Microbiology. 6:960. 2015
- Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives. Photosynthesis Research. 122:171-185. 2014
- Insertion/Deletion-Based Approach for the Detection of Escherichia coli O157:H7 in Freshwater Environments. Environmental Science and Technology. 48:11462-11470. 2014
- Elucidating the Function of the RpoS Regulon. Future Microbiology. 9:497-507. 2014
- Recent Applications of Engineered Animal Antioxidant Deficiency Models in Human Nutrition and Chronic Disease. Journal of Nutrition. 143:1-11. 2013
- Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria. Archives of Biochemistry and Biophysics. 525:161-169. 2012
- Phenotypic Diversity Caused by Differential RpoS Activity among Environmental Escherichia coli Isolates. Applied and Environmental Microbiology. 77:7915-7923. 2011
- Antagonistic regulation of motility and transcriptome expression by RpoN and RpoS in Escherichia coli. Molecular Microbiology. 79:375-386. 2011
- Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria. Journal of Molecular Evolution. 70:557-571. 2010
- Role of RpoS in Virulence of Pathogens. Infection and Immunity. 78:887-897. 2010
- Polymorphism and selection of rpoS in pathogenic Escherichia coli. BMC Microbiology. 9:118. 2009
- Control of RpoS in global gene expression of Escherichia coli in minimal media. Molecular Genetics and Genomics. 281:19-33. 2009
- Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933. BMC Genomics. 10:349-349. 2009
- Role of RpoS in the Virulence of Citrobacter rodentium. Infection and Immunity. 77:501-507. 2009
- Restoration of Vitamin C Synthesis in Transgenic Gulo−/− Mice by Helper-Dependent Adenovirus-Based Expression of Gulonolactone Oxidase. Human Gene Therapy. 19:1349-1358. 2008
- RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Molecular Genetics and Genomics. 279:267-277. 2008
- New Developments and Novel Therapeutic Perspectives for Vitamin C ,. Journal of Nutrition. 137:2171-2184. 2007
- Rapid kinetic microassay for catalase activity.. Journal of Biomolecular Techniques. 18:185-187. 2007
- Can ageing-related degenerative diseases be ameliorated through administration of vitamin C at pharmacological levels?. Medical Hypotheses. 68:1315-1317. 2007
- Stationary phase expression of the arginine biosynthetic operon argCBH in Escherichia coli. BMC Microbiology. 6:14. 2006
- Ascorbic acid synthesis due to l-gulono-1,4-lactone oxidase expression enhances NO production in endothelial cells. Biochemical and Biophysical Research Communications. 345:1657-1662. 2006
- Stationary phase-induction of G→T mutations in Escherichia coli. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 596:106-112. 2006
- RpoS-Regulated Genes ofEscherichia coliIdentified by RandomlacZFusion Mutagenesis. Journal of Bacteriology. 186:8499-8507. 2004
- Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Molecular Genetics and Genomics. 272:580-591. 2004
- Positive selection for loss of RpoS function in Escherichia coli. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 554:193-203. 2004
- Positive selection for loss of RpoS function in Escherichia coli. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 554:193-203. 2004
- Functional rescue of vitamin C synthesis deficiency in human cells using adenoviral-based expression of murine l-gulono-γ-lactone oxidase. Genomics. 83:482-492. 2004
- Controlled induction of the RpoS regulon inEscherichia coli, using an RpoS-expressing plasmid. Canadian Journal of Microbiology. 49:733-740. 2003
- Controlled Expression of an rpoS Antisense RNA Can Inhibit RpoS Function in Escherichia coli. Antimicrobial Agents and Chemotherapy. 47:3485-3493. 2003
- Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two‐component regulator. Molecular Microbiology. 37:371-381. 2000
- Expression of the Escherichia coli NRZ nitrate reductase is highly growth phase dependent and is controlled by RpoS, the alternative vegetative sigma factor. Molecular Microbiology. 34:756-766. 1999
- Endonuclease III and endonuclease IV protect Escherichia coli from the lethal and mutagenic effects of near-UV irradiation. Canadian Journal of Microbiology. 45:632-637. 1999
- Endonuclease III and endonuclease IV protect <i>Escherichia coli</i> from the lethal and mutagenic effects of near-UV irradiation. Canadian Journal of Microbiology. 45:632-637. 1999
- Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli. Journal of Bacteriology. 180:6283-6291. 1998
- Identification of Conserved, RpoS-Dependent Stationary-Phase Genes of Escherichia coli. Journal of Bacteriology. 180:6283-6291. 1998
- Near Ultraviolet Radiation (UVA and UVB) Causes a Formamidopyrimidine Glycosylase‐Dependent Increase in G to T Transversions. Photochemistry and Photobiology. 65:543-549. 1997
- Identification and characterization of hydrogen peroxide-sensitive mutants of Escherichia coli: genes that require OxyR for expression. Journal of Bacteriology. 179:330-338. 1997
- Erratum: Role of fapy glycosylase and UvrABC excinuclease in the repair of UVA (320-400 nm)-mediated DNA damage in Escherichia coli ((Photochemistry and Photobiology (1996) 63 (68-73)). Photochemistry and Photobiology. 64:876. 1996
- Role of Fapy glycosylase and UvrABC excinuclease in the repair of UVA (320-400 nm)-mediated DNA damage in Escherichia coli (vol 63, pg 68, 1996). Photochemistry and Photobiology. 64:876-876. 1996
- Role of Fapy Glycosylase and UvrABC Excinuclease in the Repair of UVA (320‐400 nm)‐mediated DNA Damage in Escherichia coli. Photochemistry and Photobiology. 63:68-73. 1996
- Regulation of hydroperoxidase (catalase) expression in Escherichia coli. FEMS Microbiology Letters. 131:113-119. 1995
- Regulation of hydroperoxidase (catalase) expression inEscherichia coli. FEMS Microbiology Letters. 131:113-119. 1995
- Induction of resistance to hydrogen peroxide and radiation inDeinococcus radiodurans. Canadian Journal of Microbiology. 41:170-176. 1995
- Isolation and sequencing of gene fusions carried by λplacMu specialized transducing phage. Nucleic Acids Research (NAR). 23:3076-3078. 1995
- Induction of Escherichia coli hydroperoxidase I by acetate and other weak acids. Journal of Bacteriology. 176:2300-2307. 1994
- Fibrobacter succinogenes S85 has multiple xylanase genes. Journal of Applied Microbiology. 75:564-573. 1993
- Regulation of katF and katE in Escherichia coli K-12 by weak acids. Journal of Bacteriology. 174:4769-4776. 1992
- Indirect stimulation of recombination in Escherichia coli K-12: dependence on recJ, uvrA, and uvrD. Journal of Bacteriology. 173:6192-6198. 1991
- An electron spin resonance study of oxyradical generation in superoxide dismutase- and catalase-deficient mutants of Escherichia coli K-12. Archives of Biochemistry and Biophysics. 271:323-331. 1989
- Response of hydroperoxidase and superoxide dismutase deficient mutants of Escherichia coli K-12 to oxidative stress. Canadian Journal of Microbiology. 34:1171-1176. 1988
- Transcriptional regulation of katE in Escherichia coli K-12. Journal of Bacteriology. 170:4286-4292. 1988
- Isolation and characterization of respiratory-deficient mutants of Escherichia coli K-12. Journal of Bacteriology. 170:78-83. 1988
- The release of fermentable carbohydrate from peat by steam explosion and its use in the microbial production of solvents. Biotechnology and Bioengineering. 28:176-184. 1986
- Multiplicity of extracellular β-(1,4)-endoglucanases of Bacteroides succinogenes S85. Canadian Journal of Microbiology. 30:930-937. 1984