publication venue for
- Local Molecular Clocks in Three Nuclear Genes: Divergence Times for Rodents and Other Mammals and Incompatibility Among Fossil Calibrations 2003
- A Concept of Complementarity Between Complexity and Redundancy can Account for Kant’s Biological Teleology and Unify Mechanistic and Finalistic Biology. 92:258-265. 2024
- Evolution of Transcript Abundance is Influenced by Indels in Protein Low Complexity Regions. 92:153-168. 2024
- A Law of Redundancy Compounds the Problem of Cancer and Precision Medicine. 91:711-720. 2023
- Origin of Sex-Biased Mental Disorders: Do Males and Females Experience Different Selective Regimes?. 90:401-417. 2022
- Decoding ‘Unnecessary Complexity’: A Law of Complexity and a Concept of Hidden Variation Behind “Missing Heritability” in Precision Medicine. 89:513-526. 2021
- Origin of Sex-Biased Mental Disorders: An Evolutionary Perspective. 89:195-213. 2021
- Spatial Patterns of Gene Expression in Bacterial Genomes. 88:510-520. 2020
- Chemical Evolution and the Evolutionary Definition of Life. 84:225-235. 2017
- A Quarter Century of In Vitro Selection. 81:137-139. 2015
- Sequence Mutation and Structural Alteration Transform a Noncatalytic DNA Sequence into an Efficient RNA-Cleaving DNAzyme. 81:245-253. 2015
- Pathways of Genetic Code Evolution in Ancient and Modern Organisms. 80:229-243. 2015
- Evolving Wonder-RNAs in a Test Tube. 77:197-198. 2013
- Phylogenetic and Functional Analysis of the Vertebrate Cytochrome P450 2 Family. 72:56-71. 2011
- Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates. 71:153-167. 2010
- Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria. 70:557-571. 2010
- Origin of Self-Replicating Biopolymers: Autocatalytic Feedback Can Jump-Start the RNA World. 69:541-554. 2009
- Regulatory Evolution of a Duplicated Heterodimer Across Species and Tissues of Allopolyploid Clawed Frogs (Xenopus). 68:236-247. 2009
- Association Between Levels of Coding Sequence Divergence and Gene Misregulation in Drosophila Male Hybrids. 65:697-704. 2007
- The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes. 64:662-688. 2007
- Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions. 64:90-100. 2007
- Codon Usage and Selection on Proteins. 63:635-653. 2006
- The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes. 63:375-392. 2006
- Lateral Transfers of Serine Hydroxymethyltransferase (glyA) and UDP-N-Acetylglucosamine Enolpyruvyl Transferase (murA) Genes from Free-living Actinobacteria to the Parasitic Chlamydiae. 63:283-296. 2006
- A Genomic Comparison of Faster-Sex, Faster-X, and Faster-Male Evolution Between Drosophila melanogaster and Drosophila pseudoobscura. 62:693-700. 2006
- The Response of Amino Acid Frequencies to Directional Mutation Pressure in Mitochondrial Genome Sequences Is Related to the Physical Properties of the Amino Acids and to the Structure of the Genetic Code. 62:340-361. 2006
- Asymmetrical Evolution of Cytochrome bd Subunits. 62:132-142. 2006
- Sex-Specific Functional Specialization and the Evolutionary Rates of Essential Fertility Genes. 61:650-658. 2005
- Diverse Evolutionary Trajectories Characterize a Community of RNA-Cleaving Deoxyribozymes: A Case Study into the Population Dynamics of In Vitro Selection. 61:192-206. 2005
- The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes. 57:435-445. 2003
- The evolution of tRNA-Leu genes in animal mitochondrial genomes. 57:435-445. 2003
- Phylogenetic Analysis of the Cytochrome P450 3 (CYP3) Gene Family. 57:200-211. 2003
- The Closest BLAST Hit Is Often Not the Nearest Neighbor. 52:540-542. 2001
- Ancyromonadida: A New Phylogenetic Lineage Among the Protozoa Closely Related to the Common Ancestor of Metazoans, Fungi, and Choanoflagellates (Opisthokonta). 51:278-285. 2000
- Evolution of Simple Sequence in Proteins. 51:131-140. 2000
- Signature Sequences in Diverse Proteins Provide Evidence of a Close Evolutionary Relationship Between the Deinococcus-Thermus Group and Cyanobacteria. 46:716-720. 1998
- The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus- Thermus group and cyanobacteria. 45:193-205. 1997
- High divergence of reproductive tract proteins and their association with postzygotic reproductive isolation in Drosophila melanogaster and Drosophila virilis group species. 41:1085-1095. 1995
- HSP70 phylogeny and the relationship between archaebacteria, eubacteria, and eukaryotes. 39:537-540. 1994
- Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes. 37:573-582. 1993
- A phylogenetic analysis based on the gene encoding phosphoglycerate kinase.. 35:466. 1992
- Genetic distance and species formation in evolving populations. 35:454-465. 1992
- A phylogenetic analysis based on the gene encoding phosphoglycerate kinase. 34:383-395. 1992
- A maximum likelihood approach to the detection of selection from a phylogeny. 31:511-523. 1990
- Chromosome-specific subsets of human alpha satellite DNA: Analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat. 25:207-214. 1987
- An evolutionary model for the insect vitellins. 18:405-413. 1982
- Expected frequencies of codon use as a function of mutation rates and codon fitnesses. 18:379-386. 1982