publication venue for
- Seq-InSite: sequence supersedes structure for protein interaction site prediction. 40:btad738. 2024
- Finite mixtures of matrix variate Poisson-log normal distributions for three-way count data. 39:btad167. 2023
- ALeS: adaptive-length spaced-seed design. 37:1206-1210. 2021
- CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery. 37:1176-1177. 2021
- DELPHI: accurate deep ensemble model for protein interaction sites prediction. 37:896-904. 2021
- PhyloCorrelate: inferring bacterial gene–gene functional associations through large-scale phylogenetic profiling. 37:17-22. 2021
- Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties. 35:5063-5065. 2019
- SAGE2: parallel human genome assembly. 34:678-680. 2018
- SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria. 33:3202-3210. 2017
- Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function. 33:1338-1345. 2017
- Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters. 32:2427-2434. 2016
- markophylo: Markov chain analysis on phylogenetic trees. 32:130-132. 2016
- E-MEM: efficient computation of maximal exact matches for very large genomes. 31:509-514. 2015
- FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures. 31:523-531. 2015
- mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens. 31:590-592. 2015
- RACER: Rapid and accurate correction of errors in reads. 29:2490-2493. 2013
- Inferring sequence regions under functional divergence in duplicate genes. 28:176-183. 2012
- SpEED: fast computation of sensitive spaced seeds. 27:2433-2434. 2011
- SHRiMP2: Sensitive yet Practical Short Read Mapping. 27:1011-1012. 2011
- HiTEC: accurate error correction in high-throughput sequencing data. 27:295-302. 2011
- Model-based clustering of microarray expression data via latent Gaussian mixture models. 26:2705-2712. 2010
- Fast computation of neighbor seeds. 25:822-823. 2009
- Multiple spaced seeds for homology search. 23:2969-2977. 2007
- PedSplit: pedigree management for stratified analysis. 20:2315-2316. 2004
- Quantification of protein surfaces, volumes and atom–atom contacts using a constrained Voronoi procedure. 18:1365-1373. 2002
- Integrated gene and species phylogenies from unaligned whole genome protein sequences. 18:100-108. 2002
- Exploratory analysis of multiple sequence alignments using phylogenies. 10:243-247. 1994