selected scholarly activity
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chapters
- Multivariate Quantitative Genetics. 71-76. 2016
- Canalization, cryptic variation, and developmental buffering: A critical examination and analytical perspective. 131-158. 2005
- CHAPTER 8 Canalization, Cryptic Variation, and Developmental Buffering A Critical Examination and Analytical Perspective. 131-158. 2005
- Canalization, Cryptic Variation, and Developmental Buffering. 131-158. 2005
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conferences
- Individual Cryptic Scaling Relationships and the Evolution of Animal Form. Integrative and Comparative Biology. 1411-1428. 2019
- Using RNA-seq to understand the endocrine control of condition-dependent traits.. Integrative and Comparative Biology. E249-E249. 2016
- More bang for your buck: Quorum-sensing capabilities improve the efficacy of suicidal altruism. Artificial Life 14 - Proceedings of the 14th International Conference on the Synthesis and Simulation of Living Systems, ALIFE 2014. 121-128. 2014
- Tipping the scales: Evolution of the allometric slope independently of average trait size. Integrative and Comparative Biology. E67-E67. 2014
- Fly wing biometrics. IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 42-46. 2013
- Fly Wing Biometrics Using Genetic & Evolutionary Feature Extraction. PROCEEDINGS OF THE IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOMETRICS AND IDENTITY MANAGEMENT (CIBIM). 42-46. 2013
- Speeding up scientific imaging workflows: Design of automated image annotation tool. 2013 1st IEEE Workshop on User-Centered Computer Vision (UCCV). 13-18. 2013
- Genetic Contingency: Intergrating genetic background and environment into the study of mutational effects. Integrative and Comparative Biology. E51-E51. 2012
- Designing: an approach to evolutionary developmental biology.. Integrative and Comparative Biology. 1262-1262. 2002
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datasets
- Anti-Predation data, videos and images
- CB_RD_Aggression2022
- ChandlerChariPLoSGenetics2017
- Drosophila Compensatory Evolution - vestigial
- Drosophila compensatory evolution - net and rhomboid
- Drosophila images from predation experiment with the jumping spider salticus scenicus.
- Drosophila melanogaster images thorax and abdomen from experimentally evolved (with predator) lineages
- Drosophila melanogaster wing images from genetic manipulations of planar cell polarity and tissue growth genes (UAS-genex.RNAi and NP6333-GAL4)
- Drosophila melanogaster wing images from low and high altitude populations in Ethiopia and Zambia.
- Drosophila melanogaster wing images genetic manipulation (UAS/GAL4) of growth regulators, and sex determination genes
- Drosophila melanogaster wing landmarks and semi-landmarks for biometric analysis
- Drosophila wing images from a phenotypic selection gradient experiment with lineages evolved with predators.
- DrosophilaSppWings
- Drosophila_melanogaster_spitz_allelic_series_15Landmarks.txt
- Drosophila_melanogaster_wings_NutritionalGeometry
- HighQualityData From the paper
- HighQualityResultsTable_MainMANOVA
- Images from Chandler, Chari et al. 2017 PLoS Genetics "How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects"
- Images from a Drosophila melanogaster Wing loading experiment from populations experimentally evolved with mantid predators
- LW_2016_WingImages_NutritionalManipulation
- Quantitative RT PCR data from imaginal wing discs of Drosophila sechellia and Drosophila simulans
- R_Programming_Statistics_Screencasts
- TR2022_TransvectionDataScripts
- WingShapeBSA
- WingsPElements_Rep1
- WingsPElements_Rep2
- spitz_alleles_complementation
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figures
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internet publications
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journal articles
- Sexually discordant selection is associated with trait-specific morphological changes and a complex genomic response. Evolution. 78:1426-1440. 2024
- Complexities of recapitulating polygenic effects in natural populations: replication of genetic effects on wing shape in artificially selected and wild-caught populations of Drosophila melanogaster. Genetics. 224:iyad050. 2023
- Genetic correlation between aggressive signals and fighting. Biology Letters. 19:20220616. 2023
- Regulation at Drosophila’s Malic Enzyme highlights the complexity of transvection and its sensitivity to genetic background. Genetics. 223:iyac181. 2023
- Complexities of recapitulating polygenic effects in natural populations: replication of genetic effects on wing shape in artificially selected and wild caught populations ofDrosophila melanogaster 2022
- The genetic basis of variation in sexual aggression: Evolution versus social plasticity. Molecular Ecology. 31:2865-2881. 2022
- Evolution of sociability by artificial selection *. Evolution. 76:541-553. 2022
- Reexamining Waddington: Canalization and new mutations are not required for the evolution of genetic assimilation 2022
- Sex chromosome degeneration, turnover, and sex-biased expression of sex-linked transcripts in African clawed frogs ( Xenopus ). Philosophical Transactions of the Royal Society of London. Biological Sciences. 376:20200095-20200095. 2021
- Spatial heterogeneity in resources alters selective dynamics in Drosophila melanogaster. Evolution. 75:1792-1804. 2021
- The influence of adaptation to life at high-altitude on condition dependent sexual shape and size dimorphism in Drosophila melanogaster 2021
- Spatial heterogeneity in resources alters selective dynamics inDrosophila melanogaster 2020
- Genetic and environmental canalization are not associated among altitudinally varying populations of Drosophila melanogaster. Evolution. 74:1755-1771. 2020
- Sexual Selection Does Not Increase the Rate of Compensatory Adaptation to a Mutation Influencing a Secondary Sexual Trait inDrosophila melanogaster. G3: Genes, Genomes, Genetics. 10:1541-1551. 2020
- Behavioral Strategy Chases Promote the Evolution of Prey Intelligence*. Genetic and Evolutionary Computation. 225-246. 2020
- Chloroform and desflurane immobilization with recovery of viable Drosophila larvae for confocal imaging. Journal of Insect Physiology. 117:103900-103900. 2019
- Genetic and environmental canalization are not associated among altitudinally varying populations ofDrosophila melanogaster 2019
- Sexual selection does not increase the rate of compensatory adaptation to a mutation influencing a secondary sexual trait inDrosophila melanogaster 2019
- A Multivariate Genome-Wide Association Study of Wing Shape inDrosophila melanogaster. Genetics. 211:1429-1447. 2019
- The behavioral repertoire of Drosophila melanogaster in the presence of two predator species that differ in hunting mode. PLoS ONE. 14:e0216860-e0216860. 2019
- Sexual dimorphism and heightened conditional expression in a sexually selected weapon in the Asian rhinoceros beetle. Molecular Ecology. 27:5049-5072. 2018
- Weed evolution: Genetic differentiation among wild, weedy, and crop radish. Evolutionary Applications. 11:1964-1974. 2018
- Sociability in Fruit Flies: Genetic Variation, Heritability and Plasticity. Behavior Genetics. 48:247-258. 2018
- How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects. PLoS Genetics. 13:e1007075-e1007075. 2017
- Does increased heat resistance result in higher susceptibility to predation? A test using Drosophila melanogaster selection and hardening. Journal of Evolutionary Biology. 30:1153-1164. 2017
- Scared fitless: Context-dependent response of fear to loss of predators over evolutionary time in Drosophila melanogaster. Facets. 2:342-354. 2017
- Disintegrating the fly: A mutational perspective on phenotypic integration and covariation. Evolution. 71:66-80. 2017
- Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer. BMC Genomics. 17:250. 2016
- The sex-limited effects of mutations in the EGFR and TGF-β signaling pathways on shape and size sexual dimorphism and allometry in the Drosophila wing. Development Genes and Evolution. 226:159-171. 2016
- Field measurements of genotype by environment interaction for fitness caused by spontaneous mutations inArabidopsis thaliana. Evolution. 70:1039-1050. 2016
- Experimental evidence for within‐ and cross‐seasonal effects of fear on survival and reproduction. Journal of Animal Ecology. 85:507-515. 2016
- Tipping the scales: Evolution of the allometric slope independent of average trait size. Evolution. 70:433-444. 2016
- An image database of Drosophila melanogaster wings for phenomic and biometric analysis. GigaScience. 4:25. 2015
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Divergent host preferences of above‐ and below‐ground
C ulex pipiens mosquitoes and their hybrid offspring. Medical and Veterinary Entomology. 29:115-123. 2015 - The significance and scope of evolutionary developmental biology: a vision for the 21st century. Evolution and Development. 17:198-219. 2015
- Evolutionary Genetics: You Are What You Evolve to Eat. Current Biology. 25:R341-R344. 2015
- Exaggerated Trait Growth in Insects. Annual Review of Entomology. 60:453-472. 2015
- Cryptic Genetic Variation in Natural Populations: A Predictive Framework. Integrative and Comparative Biology. 54:783-793. 2014
- The potential influence of morphology on the evolutionary divergence of an acoustic signal. Journal of Evolutionary Biology. 27:2163-2176. 2014
- Evolutionary rates for multivariate traits: the role of selection and genetic variation. Philosophical Transactions of the Royal Society of London. Biological Sciences. 369:20130252-20130252. 2014
- Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild RadishRaphanus raphanistrumand Three Other Brassicaceae Species . The Plant Cell. 26:1925-1937. 2014
- Adaptation to a novel predator inDrosophila melanogaster: How well are we able to predict evolutionary responses? 2014
- Causes and Consequences of Genetic Background Effects Illuminated by Integrative Genomic Analysis. Genetics. 196:1321-1336. 2014
- The roles of standing genetic variation and evolutionary history in determining the evolvability of anti-predator strategies 2014
- Daily blood feeding rhythms of laboratory-reared North American Culex pipiens. Journal of Circadian Rhythms. 12:1-1. 2014
- A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach. BMC Genomics. 15:188-188. 2014
- From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System. PLoS ONE. 9:e91783-e91783. 2014
- Insights into the Development and Evolution of Exaggerated Traits Using De Novo Transcriptomes of Two Species of Horned Scarab Beetles. PLoS ONE. 9:e88364-e88364. 2014
- More Bang For Your Buck: Quorum-Sensing Capabilities Improve the Efficacy of Suicidal Altruism. ALIFE 14: The Fourteenth Conference on the Synthesis and Simulation of Living Systems. (2014) Vol. 14. 120-128. 2014
- The Roles of Standing Genetic Variation and Evolutionary History in Determining the Evolvability of Anti-Predator Strategies. PLoS ONE. 9:e100163-e100163. 2014
- Ontogeny of sexual size dimorphism in the spotted hyena (Crocuta crocuta). Journal of Mammalogy. 94:1298-1310. 2013
- A general mechanism for conditional expression of exaggerated sexually‐selected traits. BioEssays. 35:889-899. 2013
- Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution. Trends in Genetics. 29:358-366. 2013
- Limited plasticity in the phenotypic variance‐covariance matrix for male advertisement calls in the black field cricket,Teleogryllus commodus. Journal of Evolutionary Biology. 26:1060-1078. 2013
- ALTITUDINAL CLINAL VARIATION IN WING SIZE AND SHAPE IN AFRICANDROSOPHILA MELANOGASTER: ONE CLINE OR MANY?. Evolution. 67:438-452. 2013
- CLONING AND CHARACTERIZATION OF AN mRNA ENCODING AN INSULIN RECEPTOR FROM THE HORNED SCARAB BEETLE Onthophagus nigriventris (COLEOPTERA: SCARABAEIDAE). Archives of Insect Biochemistry and Physiology. 82:43-57. 2013
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Genotype‐by‐environment interactions for cuticular hydrocarbon expression in
D rosophila simulans. Journal of Evolutionary Biology. 26:94-107. 2013 - RUNAWAY SEXUAL SELECTION LEADS TO GOOD GENES. Evolution. 67:110-119. 2013
- The Conditional Nature of Genetic Interactions: The Consequences of Wild-Type Backgrounds on Mutational Interactions in a Genome-Wide Modifier Screen. PLoS Genetics. 9:e1003661-e1003661. 2013
- Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback. Molecular Ecology. 21:5265-5279. 2012
- An experimental test for genetic constraints in Drosophila melanogaster 2012
- A Mechanism of Extreme Growth and Reliable Signaling in Sexually Selected Ornaments and Weapons. Science. 337:860-864. 2012
- EXPERIMENTAL EVOLUTION OF THE CAENORHABDITIS ELEGANS SEX DETERMINATION PATHWAY. Evolution. 66:82-93. 2012
- Lifetime selection on a hypoallometric size trait in the spotted hyena. Proceedings of the Royal Society of London. Biological Sciences. 278:3277-3285. 2011
- Experimental Manipulation of Body Size to Estimate Morphological Scaling Relationships in <em>Drosophila</em>. Journal of Visualized Experiments. 3162. 2011
- The role of developmental plasticity in evolutionary innovation. Proceedings of the Royal Society of London. Biological Sciences. 278:2705-2713. 2011
- The Effects of Weak Genetic Perturbations on the Transcriptome of the Wing Imaginal Disc and Its Association With Wing Shape in Drosophila melanogaster. Genetics. 187:1171-1184. 2011
- PLASTICITY, CANALIZATION, AND DEVELOPMENTAL STABILITY OF THEDROSOPHILAWING: JOINT EFFECTS OF MUTATIONS AND DEVELOPMENTAL TEMPERATURE. Evolution. 63:2864-2876. 2009
- Many ways to be small: different environmental regulators of size generate distinct scaling relationships inDrosophila melanogaster. Proceedings of the Royal Society of London. Biological Sciences. 276:2625-2633. 2009
- Genomic Consequences of Background Effects onscallopedMutant Expressivity in the Wing ofDrosophila melanogaster. Genetics. 181:1065-1076. 2009
- Genetic Changes Accompanying the Evolution of Host Specialization in Drosophila sechellia. Genetics. 181:721-736. 2009
- Genetics of microenvironmental canalization in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104:13717-13722. 2007
- Complex genetic interactions govern the temporal effects of Antennapedia on antenna-to-leg transformations in Drosophila melanogaster. Journal of Genetics. 86:111-123. 2007
- Insulin signaling and limb-patterning: candidate pathways for the origin and evolutionary diversification of beetle ‘horns’. Heredity. 97:179-191. 2006
- Epidermal Growth Factor Receptor and Transforming Growth Factor-β Signaling Contributes to Variation for Wing Shape in Drosophila melanogaster. Genetics. 173:1417-1431. 2006
- Imaginal Discs, the Genetic and Cellular Logic of Pattern Formation. Lewis I Held, Jr. Cambridge University Press. 2005. 461 pages. ISBN 0 521 01835 8. Price £38. (paperback). (ISBN 0521 58445 0. Price £120. (hardback) published 2002). Genetical Research. 87:219-219. 2006
- Tests for the replication of an association between Egfr and natural variation in Drosophila melanogaster wing morphology. BMC Genomic Data. 6:44. 2005
- Towards a genetic architecture of cryptic genetic variation and genetic assimilation: The contribution of K. G. Bateman. Journal of Genetics. 84:223-226. 2005
- A STUDY OF CANALIZATION AND DEVELOPMENTAL STABILITY IN THE STERNOPLEURAL BRISTLE SYSTEM OF DROSOPHILA MELANOGASTER. Evolution. 59:1500-1509. 2005
- Replication of an Egfr-Wing Shape Association in a Wild-Caught Cohort of Drosophila melanogaster. Genetics. 169:2115-2125. 2005
- Evidence for canalization of Distal‐less function in the leg of Drosophila melanogaster. Evolution and Development. 7:89-100. 2005
- A STUDY OF CANALIZATION AND DEVELOPMENTAL STABILITY IN THE STERNOPLEURAL BRISTLE SYSTEM OF DROSOPHILA MELANOGASTER. Evolution. 59:1500-1500. 2005
- Uncovering cryptic genetic variation. Nature Reviews Genetics. 5:681-690. 2004
- Nucleotide Variation in the Egfr Locus of Drosophila melanogaster. Genetics. 167:1199-1212. 2004
- The environmental and genetic regulation of obake expressivity: morphogenetic fields as evolvable systems. Evolution and Development. 6:114-122. 2004
- Developmental Instability: Causes and Consequences.Edited by Michal Polak. Oxford and New York: Oxford University Press. $95.00. xxiii + 459 p; ill.; taxonomic and subject indexes. ISBN: 0–19–514345–0. 2003.. Quarterly Review of Biology. 78:479-479. 2003
- Evidence that Egfr Contributes to Cryptic Genetic Variation for Photoreceptor Determination in Natural Populations of Drosophila melanogaster. Current Biology. 13:1888-1893. 2003
- Are entrenched characters developmentally constrained? Creating biramous limbs in an insect. Evolution and Development. 3:424-431. 2001
- Developmental Plasticity, Within-Generation Diversified Bet-hedging, and Robustness: what does it mean to be unstable?. Journal of Experimental Biology.
- Fly Wing Biometrics Using Modified Local Binary Pattern, SVMs and Random Forest. International Journal of Machine Learning and Computing. 4:279-285.
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media
- CSE891_R_ControlFlow.zip
- Drosophila Behavioural repertoire under predation risk
- DrosophilaPredationBehaviourAssayVideos
- Drosophila_abdominalLiftingBehaviour_Video1
- Drosophila_retreat_behaviour_video3
- Drosophila_stopping_behaviour_video2
- R_Intro4_Objects_classes_2013.zip
- R_Intro5_Workspaces_Help_2013.zipVideos of screencasts for tutorials for the R programming language
- R_Intro_Part1_2013.zipVideos of screencasts for tutorials for the R programming language
- R_Intro_Part2_2013.zipVideos of screencasts for tutorials for the R programming language
- R_Intro_Part3_2013.zip
- R_intro7_RegSequences_Indexing_2013.zip
- Video of picture wing fly startling a jumping spider
- Video of picture wing fly startling a jumping spider
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posters
- Cryptic genetic variation in natural populations of Drosophila melanogaster
- Poster: Cryptic genetic variation in natural populations of Drosophila melanogaster. AGA March 2018
- Poster: How does condition dependence for sexually dimorphic traits evolve during rapid adaptation?
- The anti-predatory behavioral repertoire of Drosophila melanogaster
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preprints
- Polygenic architecture of adaptation to a high-altitude environment forDrosophila melanogasterwing shape and size 2024
- Sexually discordant selection is associated with trait specific morphological changes and a complex genomic response 2023
- The Sheep and the Goats: Distinguishing transcriptional enhancers in a complex chromatin landscape 2018
- Compensatory evolution via cryptic genetic variation: Distinct trajectories to phenotypic and fitness recovery 2017
- How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects 2017
- The power of a multivariate approach to genome-wide association studies: an example withDrosophila melanogasterwing shape 2017
- The sex-limited effects of mutations in the EGFR and TGF-β signaling pathways on shape and size sexual dimorphism and allometry in theDrosophilawing 2016
- Dis-integrating the fly: A mutational perspective on phenotypic integration and covariation 2015
- How predator hunting-modes affect prey behaviour: Capture deterrence inDrosophila melanogaster 2014
- More Bang For Your Buck: Quorum-Sensing Capabilities Improve the Efficacy of Suicidal Altruism 2014
- Evolutionary rates for multivariate traits: the role of selection and genetic variation 2014
- Behavioral Strategy Chases Promote the Evolution of Prey Intelligence 2013
- From Cues to Signals: Evolution of Interspecific Communication Via Aposematism and Mimicry in a Predator-Prey System 2013
- Causes and Consequences of genetic background effects illuminated by integrative genomic analysis 2013
- Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution 2013
- An experimental test for genetic constraints in Drosophila melanogaster 2012
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presentations