publication venue for
- Insight into the evolutionary and domesticated history of the most widely cultivated mushroom Agaricus bisporus via mitogenome sequences of 361 global strains. 24:182. 2023
- DNA methylation changes in cord blood and the developmental origins of health and disease – a systematic review and replication study. 23:221. 2022
- PathFams: statistical detection of pathogen-associated protein domains. 22:663. 2021
- Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress. 21:396. 2020
- Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. 21:519. 2020
- Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis. 19:45. 2018
- Prediction of plant lncRNA by ensemble machine learning classifiers. 19:316. 2018
- A phased SNP-based classification of sickle cell anemia HBB haplotypes. 18:608. 2017
- Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems. 18:78. 2017
- A novel strain of cynomolgus macaque cytomegalovirus: implications for host-virus co-evolution. 17:277. 2016
- Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer. 17:250. 2016
- Multicopy gene family evolution on primate Y chromosomes. 17:157. 2016
- Cross-species transcriptomic analysis elucidates constitutive aryl hydrocarbon receptor activity.. 15:1053. 2014
- Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness. 15:851. 2014
- Metabolic and co-expression network-based analyses associated with nitrate response in rice. 15:1056. 2014
- Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress. 15:681. 2014
- A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach. 15:188-188. 2014
- Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria. 14:558. 2013
- Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses. 14:3. 2013
- Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation. 14:895. 2013
- RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions. 14:578. 2013
- Decreased miR-192 expression in peripheral blood of asthmatic individuals undergoing an allergen inhalation challenge. 13:655. 2012
- Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation. 13:14-14. 2012
- Gene expression profiling in the Cynomolgus macaque Macaca fascicularis shows variation within the normal birth range. 12:509. 2011
- Seeds for effective oligonucleotide design. 12:280. 2011
- The odds of duplicate gene persistence after polyploidization. 12:599. 2011
- A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae. 11:236. 2010
- Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes. 11:667. 2010
- Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish. 11:643. 2010
- Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny. 10:534. 2009
- Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933. 10:349-349. 2009
- Comparative analysis of function and interaction of transcription factors in nematodes: Extensive conservation of orthology coupled to rapid sequence evolution. 9:399. 2008
- Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. 9:204-204. 2008
- Uncovering rate variation of lateral gene transfer during bacterial genome evolution. 9:235-235. 2008
- Uncovering rate variation of lateral gene transfer during bacterial genome evolution. 9:556-556. 2008
- Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis. 8:86-86. 2007
- Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes. 8:369-369. 2007
- BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species. 7:14. 2006
- Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales). 7:167. 2006
- Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains. 7:286. 2006
- Tests for differential gene expression using weights in oligonucleotide microarray experiments. 7:33. 2006
- Signature proteins that are distinctive of alpha proteobacteria. 6:94. 2005