Journal article
Alternative expression analysis by RNA sequencing
Abstract
Alternative expression analysis by sequencing (ALEXA-seq) aligns RNA-seq reads from different cell types to a database of alternative expression sequence features and quantifies isoforms that are differentially expressed between samples.
Authors
Griffith M; Griffith OL; Mwenifumbo J; Goya R; Morrissy AS; Morin RD; Corbett R; Tang MJ; Hou Y-C; Pugh TJ
Journal
Nature Methods, Vol. 7, No. 10, pp. 843–847
Publisher
Springer Nature
Publication Date
October 2010
DOI
10.1038/nmeth.1503
ISSN
1548-7091
Associated Experts
Fields of Research (FoR)
Medical Subject Headings (MeSH)
Alternative SplicingAntimetabolites, AntineoplasticCell Line, TumorColorectal NeoplasmsDatabases, GeneticDrug Resistance, NeoplasmExpressed Sequence TagsFluorouracilGene ExpressionGene Expression ProfilingHumansOligonucleotide Array Sequence AnalysisProtein IsoformsRNA, MessengerReverse Transcriptase Polymerase Chain ReactionSequence AlignmentSequence Analysis, RNA