selected scholarly activity
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academic article
- The Mla pathway plays an essential role in the intrinsic resistance of Burkholderia cepacia complex species to antimicrobials and host innate components.. Journal of Bacteriology. JB.00156-18-JB.00156-18. 2018
- Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction.. Cell Host and Microbe. 23:570. 2018
- Changes in gut microbiota during development of compulsive checking and locomotor sensitization induced by chronic treatment with the dopamine agonist quinpirole.. Behavioural Pharmacology. 29:211-224. 2018
- Transformation of the Anticancer Drug Doxorubicin in the Human Gut Microbiome.. ACS Infectious Diseases. 4:68-76. 2018
- Intrapartum antibiotics for GBS prophylaxis alter colonization patterns in the early infant gut microbiome of low risk infants.. Scientific Reports. 7:16527. 2017
- Non-digestible oligosaccharides directly regulate host kinome to modulate host inflammatory responses without alterations in the gut microbiota.. Microbiome. 5:135. 2017
- Streptococcus pneumoniae Colonization Is Required To Alter the Nasal Microbiota in Cigarette Smoke-Exposed Mice.. Infection and Immunity. 85. 2017
- Functional Enterospheres Derived In Vitro from Human Pluripotent Stem Cells.. Stem Cell Reports. 9:897-912. 2017
- Lessons from the Environmental Antibiotic Resistome.. Annual Review of Microbiology. 71:309-329. 2017
- The Nasopharyngeal Microbiota of Children With Respiratory Infections in Botswana.. Pediatric Infectious Disease Journal. 36:e211-e218. 2017
- How do probiotics and prebiotics function at distant sites?. Beneficial microbes. 8:521-533. 2017
- A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.. Microbiome. 5:100. 2017
- Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome.. Gastroenterology. 153:448-459.e8. 2017
- The Evolving Cystic Fibrosis Microbiome: A Comparative Cohort Study Spanning 16 Years.. Proceedings of the American Thoracic Society. 14:1288-1297. 2017
- A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria.. eLife. 6. 2017
- Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study.. Journal of Clinical Microbiology. 55:2074-2085. 2017
- Pseudomonas aeruginosa-Derived Rhamnolipids and Other Detergents Modulate Colony Morphotype and Motility in the Burkholderia cepacia Complex.. Journal of Bacteriology. 199. 2017
- Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity.. mBio. 8. 2017
- The effects of inhaled aztreonam on the cystic fibrosis lung microbiome.. Microbiome. 5:51. 2017
- Effect of freezing sputum on Pseudomonas aeruginosa population heterogeneity.. Journal of Cystic Fibrosis. 16:353-357. 2017
- Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction.. Cell Host and Microbe. 21:455-466.e4. 2017
- Long-term clinical outcomes of 'Prairie Epidemic Strain' Pseudomonas aeruginosa infection in adults with cystic fibrosis.. Thorax. 72:333-339. 2017
- Ethnic and diet-related differences in the healthy infant microbiome.. Genome Medicine. 9:32. 2017
- Milk Fat Globule Membrane Supplementation in Formula Modulates the Neonatal Gut Microbiome and Normalizes Intestinal Development.. Scientific Reports. 7:45274. 2017
- The gut microbiota and psychiatric illness.. Journal of Psychiatry and Neuroscience Psychiatric Journal of the University of Ottawa. 42:75-77. 2017
- Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice.. Science Translational Medicine. 9. 2017
- Oral treatment with Lactobacillus rhamnosus attenuates behavioural deficits and immune changes in chronic social stress.. BMC Medicine. 15:7. 2017
- Association of high-risk sexual behaviour with diversity of the vaginal microbiota and abundance of Lactobacillus.. PLoS ONE. 12:e0187612. 2017
- Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis.. PLoS ONE. 12:e0172811. 2017
- Reemergence of Lower-Airway Microbiota in Lung Transplant Patients with Cystic Fibrosis.. Proceedings of the American Thoracic Society. 13:2132-2142. 2016
- Brain microbiota disruption within inflammatory demyelinating lesions in multiple sclerosis.. Scientific Reports. 6:37344. 2016
- A comparison of intestinal microbiota in a population of low-risk infants exposed and not exposed to intrapartum antibiotics: The Baby & Microbiota of the Intestine cohort study protocol.. BMC Pediatrics. 16:183. 2016
- Composition and immunological significance of the upper respiratory tract microbiota.. FEBS Letters. 590:3705-3720. 2016
- Duodenal Bacteria From Patients With Celiac Disease and Healthy Subjects Distinctly Affect Gluten Breakdown and Immunogenicity.. Gastroenterology. 151:670-683. 2016
- A Modular, Tn7-Based System for Making Bioluminescent or Fluorescent Salmonella and Escherichia coli Strains.. Applied and Environmental Microbiology. 82:4931-4943. 2016
- Probiotics: Prevention of Severe Pneumonia and Endotracheal Colonization Trial-PROSPECT: a pilot trial.. Current Controlled Trials in Cardiovascular Medicine Trials. 17:377. 2016
- Early life nasal microbiota in infants with cystic fibrosis.. The Lancet Respiratory Medicine. 4:595-596. 2016
- Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling.. Genome Medicine. 8:72. 2016
- Unique microbial-derived volatile organic compounds in portal venous circulation in murine non-alcoholic fatty liver disease.. Biochimica et Biophysica Acta - Molecular Basis of Disease. 1862:1337-1344. 2016
- High-intensity exercise training increases the diversity and metabolic capacity of the mouse distal gut microbiota during diet-induced obesity.. American Journal of Physiology - Endocrinology and Metabolism. 310:E982-E993. 2016
- Epidemic Pseudomonas aeruginosa infection in patients with cystic fibrosis is not a risk factor for poor clinical Outcomes following lung transplantation.. Journal of Cystic Fibrosis. 15:392-399. 2016
- The Gut Microbiome: Potential Innovations for the Understanding and Treatment of Psychopathology. Canadian Psychology. 57:67-75. 2016
- Understanding the natural history and clinical implications of airways infections in CF - Moving beyond the classics.. Journal of Cystic Fibrosis. 15:270-271. 2016
- Looks Who's Talking Now.. Cell Host and Microbe. 19:429-430. 2016
- Histone deacetylase activity and recurrent bacterial bronchitis in severe eosinophilic asthma.. Allergy: European Journal of Allergy and Clinical Immunology. 71:571-575. 2016
- Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice.. Infection and Immunity. 84:906-916. 2016
- Metabolic and transcriptomic profiling of Streptococcus intermedius during aerobic and anaerobic growth. Metabolomics. 12. 2016
- Development and Validation of a PCR Assay To Detect the Prairie Epidemic Strain of Pseudomonas aeruginosa from Patients with Cystic Fibrosis.. Journal of Clinical Microbiology. 54:489-491. 2016
- Assessment of the Microbial Constituents of the Home Environment of Individuals with Cystic Fibrosis (CF) and Their Association with Lower Airways Infections.. PLoS ONE. 11:e0148534. 2016
- Cyanide Toxicity to Burkholderia cenocepacia Is Modulated by Polymicrobial Communities and Environmental Factors.. Frontiers in Microbiology. 7:725. 2016
- Structural & functional consequences of chronic psychosocial stress on the microbiome & host.. Psychoneuroendocrinology. 63:217-227. 2016
- The Microbiome: The Trillions of Microorganisms That Maintain Health and Cause Disease in Humans and Companion Animals.. Veterinary Pathology. 53:10-21. 2016
- The sil Locus in Streptococcus Anginosus Group: Interspecies Competition and a Hotspot of Genetic Diversity.. Frontiers in Microbiology. 7:2156. 2016
- Clinical implications and characterization of Group A Streptoccoccus infections in adults with cystic fibrosis.. BMC Pulmonary Medicine. 15:161. 2015
- Infection control knowledge, beliefs and behaviours amongst cystic fibrosis patients with epidemic Pseudomonas aeruginosa.. BMC Pulmonary Medicine. 15:138. 2015
- Antibiotic susceptibility and molecular mechanisms of macrolide resistance in streptococci isolated from adult cystic fibrosis patients.. Journal of Medical Microbiology. 64:1375-1386. 2015
- Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing?. Proceedings of the American Thoracic Society. 12 Suppl 2:S207-S211. 2015
- The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients.. BMC Microbiology. 15:215. 2015
- Lost in Translation: The Gut Microbiota in Psychiatric Illness.. Canadian Journal of Psychiatry. 60:460-463. 2015
- Ecobiotherapy Rich in Firmicutes Decreases Susceptibility to Colitis in a Humanized Gnotobiotic Mouse Model.. Inflammatory Bowel Diseases. 21:1883-1893. 2015
- Microbiota and host determinants of behavioural phenotype in maternally separated mice.. Nature Communications. 6:7735. 2015
- A multidimensional approach to the management of severe asthma: Inflammometry, molecular microbiology and bronchial thermoplasty.. Canadian Respiratory Journal. 22:221-224. 2015
- Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial.. Gastroenterology. 149:102-109.e6. 2015
- GLP-1R Agonists Modulate Enteric Immune Responses Through the Intestinal Intraepithelial Lymphocyte GLP-1R.. Diabetes. 64:2537-2549. 2015
- Deciphering the pathogenesis of NSAID enteropathy using proton pump inhibitors and a hydrogen sulfide-releasing NSAID.. American Journal of Physiology - Gastrointestinal and Liver Physiology. 308:G994-1003. 2015
- Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age.. ISME Journal. 9:1268. 2015
- Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age.. ISME Journal. 9:1246-1259. 2015
- NSAID enteropathy and bacteria: a complicated relationship.. Journal of Gastroenterology. 50:387-393. 2015
- Uncoupling of pro- and anti-inflammatory properties of Staphylococcus aureus.. Infection and Immunity. 83:1587-1597. 2015
- Reduction in Pseudomonas aeruginosa sputum density during a cystic fibrosis pulmonary exacerbation does not predict clinical response.. BMC Infectious Diseases. 15:145. 2015
- Defective NOD2 peptidoglycan sensing promotes diet-induced inflammation, dysbiosis, and insulin resistance.. EMBO Molecular Medicine. 7:259-274. 2015
- Hydrogen sulphide protects against NSAID-enteropathy through modulation of bile and the microbiota.. British Journal of Pharmacology British journal of pharmacology and chemotherapy. 172:992-1004. 2015
- Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet.. Gut Microbes. 6:310-320. 2015
- Probiotics: Prevention of Severe Pneumonia and Endotracheal Colonization Trial-PROSPECT: protocol for a feasibility randomized pilot trial.. Pilot Feasibility Stud. 1:19. 2015
- MicroRNA-155 is required for clearance of Streptococcus pneumoniae from the nasopharynx.. Infection and Immunity. 82:4824-4833. 2014
- The attenuated virulence of a Burkholderia cenocepacia paaABCDE mutant is due to inhibition of quorum sensing by release of phenylacetic acid.. Molecular Microbiology Microbiological Sciences. 94:522-536. 2014
- Host cytokine responses distinguish invasive from airway isolates of the Streptococcus milleri/anginosis group.. BMC Infectious Diseases. 14:498. 2014
- The loss of topography in the microbial communities of the upper respiratory tract in the elderly.. Annals of the American Thoracic Society. 11:513-521. 2014
- Twenty-five-year outbreak of Pseudomonas aeruginosa infecting individuals with cystic fibrosis: identification of the prairie epidemic strain.. Journal of Clinical Microbiology. 52:1127-1135. 2014
- Draft Genome Sequence of Burkholderia dolosa PC543 Isolated from Cystic Fibrosis Airways.. Genome Announcements. 2. 2014
- Genetic signature of bacterial pathogen adaptation during chronic pulmonary infections.. Nature Genetics. 46:5-6. 2014
- The cystic fibrosis lung microbiome.. Annals of the American Thoracic Society. 11 Suppl 1:S61-S65. 2014
- Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.. BMC Genomics. 14:895. 2013
- A guide to bioinformatics for immunologists.. Frontiers in Immunology. 4:416. 2013
- What to expect when you're expectorating: cystic fibrosis exacerbations and microbiota.. Annals of the American Thoracic Society. 10:249-250. 2013
- Extracellular DNA-induced antimicrobial peptide resistance in Salmonella enterica serovar Typhimurium.. BMC Microbiology. 13:115. 2013
- Hybrid sensor kinase PA1611 in Pseudomonas aeruginosa regulates transitions between acute and chronic infection through direct interaction with RetS.. Molecular Microbiology Microbiological Sciences. 88:784-797. 2013
- Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status.. PLoS ONE. 8:e54673. 2013
- Concentration-dependent activity of antibiotics in natural environments.. Frontiers in Microbiology. 4:20. 2013
- Phenotypic heterogeneity of Pseudomonas aeruginosa populations in a cystic fibrosis patient.. PLoS ONE. 8:e60225. 2013
- Assessment of virulence diversity of methicillin-resistant Staphylococcus aureus strains with a Drosophila melanogaster infection model.. BMC Microbiology. 12:274. 2012
- The cystic fibrosis airway microbiome.. Current Opinion in Pulmonary Medicine. 18:622-627. 2012
- The interplay between the intestinal microbiota and the brain.. Nature Reviews Microbiology. 10:735-742. 2012
- Pyrosequencing reveals the complex polymicrobial nature of invasive pyogenic infections: microbial constituents of empyema, liver abscess, and intracerebral abscess.. European Journal of Clinical Microbiology and Infectious Diseases. 31:2679-2691. 2012
- Comprehensive analysis of gene-environmental interactions with temporal gene expression profiles in Pseudomonas aeruginosa.. PLoS ONE. 7:e35993. 2012
- Transcriptional regulation of sdiA by cAMP-receptor protein, LeuO, and environmental signals in Salmonella enterica serovar Typhimurium.. Canadian Journal of Microbiology. 58:10-22. 2012
- Intergenic sequence comparison of Escherichia coli isolates reveals lifestyle adaptations but not host specificity.. Applied and Environmental Microbiology. 77:7620-7632. 2011
- Drosophila melanogaster as an animal model for the study of Pseudomonas aeruginosa biofilm infections in vivo.. PLoS Pathogens. 7:e1002299. 2011
- Mesalazine (5-aminosalicylic acid) alters faecal bacterial profiles, but not mucosal proteolytic activity in diarrhoea-predominant irritable bowel syndrome.. Alimentary Pharmacology and Therapeutics. 34:374-383. 2011
- Complex Pseudomonas population structure in cystic fibrosis airway infections.. American Journal of Respiratory and Critical Care Medicine. 183:1581-1583. 2011
- Inactivation of MuxABC-OpmB transporter system in Pseudomonas aeruginosa leads to increased ampicillin and carbenicillin resistance and decreased virulence.. Journal of Microbiology. 49:107-114. 2011
- The polymicrobial nature of airway infections in cystic fibrosis: Cangene Gold Medal Lecture.. Canadian Journal of Microbiology. 57:69-77. 2011
- Culture enriched molecular profiling of the cystic fibrosis airway microbiome.. PLoS ONE. 6:e22702. 2011
- Identification of mutants with altered phenazine production in Pseudomonas aeruginosa.. Journal of Medical Microbiology. 60:22-34. 2011
- Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones.. Japanese Journal of Antibiotics Journal of Antibiotics. 64:73-78. 2011
- A novel mechanism of rapid nuclear neutrophil extracellular trap formation in response to Staphylococcus aureus.. Journal of Immunology. 185:7413-7425. 2010
- Cysteine biosynthesis, oxidative stress and antibiotic resistance in Salmonella typhimurium.. Research in Microbiology. 161:643-650. 2010
- Azithromycin paradox in the treatment of cystic fibrosis airway disease.. Future Microbiology. 5:1315-1319. 2010
- Characterization of a cryptic plasmid from Pseudomonas sp. and utilization of its temperature-sensitive derivatives for genetic manipulation.. Plasmid. 64:110-117. 2010
- The genus Prevotella in cystic fibrosis airways.. Anaerobe. 16:337-344. 2010
- A global metabolic shift is linked to Salmonella multicellular development.. PLoS ONE. 5:e11814. 2010
- Macrolide and clindamycin resistance in Streptococcus milleri group isolates from the airways of cystic fibrosis patients.. Antimicrobial Agents and Chemotherapy. 54:2823-2829. 2010
- The Streptococcus milleri population of a cystic fibrosis clinic reveals patient specificity and intraspecies diversity.. Journal of Clinical Microbiology. 48:2592-2594. 2010
- Integration of transcriptional inputs at promoters of the arabinose catabolic pathway.. BMC Systems Biology. 4:75. 2010
- N-acetyllactosamine-induced retraction of bundle-forming pili regulates virulence-associated gene expression in enteropathogenic Escherichia coli.. Molecular Microbiology Microbiological Sciences. 76:1111-1126. 2010
- A catalog of reference genomes from the human microbiome.. Science The Scientific monthly. 328:994-999. 2010
- McKay agar enables routine quantification of the 'Streptococcus milleri' group in cystic fibrosis patients.. Journal of Medical Microbiology. 59:534-540. 2010
- Development of real-time PCR assays for detection of the Streptococcus milleri group from cystic fibrosis clinical specimens by targeting the cpn60 and 16S rRNA genes.. Journal of Clinical Microbiology. 48:1150-1160. 2010
- Characterization of Streptococcus milleri group isolates from expectorated sputum of adult patients with cystic fibrosis.. Journal of Clinical Microbiology. 48:395-401. 2010
- The relevance of the polymicrobial nature of airway infection in the acute and chronic management of patients with cystic fibrosis.. Current Opinion in Investigational Drugs. 10:787-794. 2009
- Effects of mesalamine (5-aminosalicylic acid) on bacterial gene expression.. Inflammatory Bowel Diseases. 15:985-996. 2009
- Long-term survival of Salmonella enterica serovar Typhimurium reveals an infectious state that is underrepresented on laboratory media containing bile salts.. Applied and Environmental Microbiology. 75:4923-4925. 2009
- Genomic instability in regions adjacent to a highly conserved pch prophage in Escherichia coli O157:H7 generates diversity in expression patterns of the LEE pathogenicity island.. Journal of Bacteriology. 191:3553-3568. 2009
- Chemical interactions between organisms in microbial communities.. Contributions to microbiology. 16:1-17. 2009
- Sleeping beauty mutase (sbm) is expressed and interacts with ygfd in Escherichia coli.. Microbiological Research Zentralblatt f�r Mikrobiologie. 164:1-8. 2009
- L-Cysteine is required for induced antibiotic resistance in actively swarming Salmonella enterica serovar Typhimurium.. Microbiology. 154:3410-3419. 2008
- Discerning the complexity of community interactions using a Drosophila model of polymicrobial infections.. PLoS Pathogens. 4:e1000184. 2008
- A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients.. Proceedings of the National Academy of Sciences of the United States of America. 105:15070-15075. 2008
- Bringing order to a complex molecular machine: the assembly of the bacterial flagella.. Biochimica et Biophysica Acta - Biomembranes Biochimica et Biophysica Acta - Reviews on Biomembranes. 1778:1851-1858. 2008
- The YebC family protein PA0964 negatively regulates the Pseudomonas aeruginosa quinolone signal system and pyocyanin production.. Journal of Bacteriology. 190:6217-6227. 2008
- Modulation of secreted virulence factor genes by subinhibitory concentrations of antibiotics in Pseudomonas aeruginosa.. Journal of Microbiology. 46:441-447. 2008
- The Streptococcus milleri group--an unrecognized cause of disease in cystic fibrosis: a case series and literature review.. Pediatric Pulmonology. 43:490-497. 2008
- Aggregation via the red, dry, and rough morphotype is not a virulence adaptation in Salmonella enterica serovar Typhimurium.. Infection and Immunity. 76:1048-1058. 2008
- Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage.. ISME Journal. 2:293-307. 2008
- Individuality in bacteria.. Annual Review of Genetics. 42:253-268. 2008
- OMLeT - An alternative approach to learning metabolism: Glycolysis and the TCA cycle as an example. Journal of Chemical Education. 84:2024-2029. 2007
- Persistence of Salmonella on egg conveyor belts is dependent on the belt type but not on the rdar morphotype.. Poultry Science. 86:2375-2383. 2007
- Environmental regulation of Pseudomonas aeruginosa PAO1 Las and Rhl quorum-sensing systems.. Journal of Bacteriology. 189:4827-4836. 2007
- The identification of functional motifs in temporal gene expression analysis.. Evolutionary Bioinformatics. 1:84-96. 2007
- An efficient system for markerless gene replacement applicable in a wide variety of enterobacterial species.. Canadian Journal of Microbiology. 53:56-62. 2007
- Programming gene expression with combinatorial promoters.. Molecular Systems Biology. 3:145. 2007
- The wavelet-based cluster analysis for temporal gene expression data.. Eurasip Journal on Bioinformatics and Systems Biology. 2007:39382. 2007
- Comparative genetics of the rdar morphotype in Salmonella.. Journal of Bacteriology. 188:8395-8406. 2006
- Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence.. Journal of Bacteriology. 188:7722-7730. 2006
- The mviN homolog in Burkholderia pseudomallei is essential for viability and virulence.. Canadian Journal of Microbiology. 52:831-842. 2006
- A comprehensive library of fluorescent transcriptional reporters for Escherichia coli.. PLoS Medicine Nature Methods. 3:623-628. 2006
- Cost of cell-cell signalling in Pseudomonas aeruginosa: why it can pay to be signal-blind - Author reply. Nature Reviews Microbiology. 4. 2006
- Cystic fibrosis: a polymicrobial infectious disease.. Future Microbiology. 1:53-61. 2006
- Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella. Journal of Bacteriology. 188:3219-3227. 2006
- Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella.. Journal of Bacteriology. 188:3219-3227. 2006
- Communication in bacteria: an ecological and evolutionary perspective.. Nature Reviews Microbiology. 4:249-258. 2006
- Coordinated regulation of two independent cell-cell signaling systems and swarmer differentiation in Salmonella enterica serovar Typhimurium.. Journal of Bacteriology. 188:431-440. 2006
- Ecological behavior of Lactobacillus reuteri 100-23 is affected by mutation of the luxS gene.. Applied and Environmental Microbiology. 71:8419-8425. 2005
- Prevalence of surface swarming behavior in Salmonella. Journal of Bacteriology. 187:6580-6583. 2005
- Prevalence of surface swarming behavior in Salmonella.. Journal of Bacteriology. 187:6580-6583. 2005
- Metabolic differentiation in actively swarming Salmonella.. Molecular Microbiology Microbiological Sciences. 54:702-714. 2004
- Dual effects of MLS antibiotics: transcriptional modulation and interactions on the ribosome.. Chemistry and Biology. 11:1307-1316. 2004
- Just-in-time transcription program in metabolic pathways.. Nature Genetics. 36:486-491. 2004
- Comparative genomics via wavelet analysis for closely related bacteria. Eurasip Journal on Applied Signal Processing Applied Signal Processing Eurasip Journal on Advances in Signal Processing. 2004:5-12. 2004
- Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication.. Molecular Microbiology Microbiological Sciences. 50:1477-1491. 2003
- Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library.. Journal of Bacteriology. 185:4973-4982. 2003
- Detailed map of a cis-regulatory input function.. Proceedings of the National Academy of Sciences of the United States of America. 100:7702-7707. 2003
- Swarm-cell differentiation in Salmonella enterica serovar typhimurium results in elevated resistance to multiple antibiotics.. Journal of Bacteriology. 185:3111-3117. 2003
- Trait-to-gene: a computational method for predicting the function of uncharacterized genes.. Current Biology. 13:129-133. 2003
- Swarming populations of Salmonella represent a unique physiological state coupled to multiple mechanisms of antibiotic resistance.. Biological Procedures Online. 5:189-196. 2003
- Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics.. Proceedings of the National Academy of Sciences of the United States of America. 99:17025-17030. 2002
- The dynamic microbe: green fluorescent protein brings bacteria to light.. Molecular Microbiology Microbiological Sciences. 45:1191-1196. 2002
- pfs-dependent regulation of autoinducer 2 production in Salmonella enterica serovar Typhimurium.. Journal of Bacteriology. 184:3450-3456. 2002
- The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum-sensing signal molecule.. Molecular Microbiology Microbiological Sciences. 41:463-476. 2001
- Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria.. Science The Scientific monthly. 292:2080-2083. 2001
- An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells.. Science The Scientific monthly. 287:1652-1655. 2000
- Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio harveyi: a new family of genes responsible for autoinducer production.. Proceedings of the National Academy of Sciences of the United States of America. 96:1639-1644. 1999
- Robustness in bacterial chemotaxis.. Nature Nature: New biology. 397:168-171. 1999
- Protein mobility in the cytoplasm of Escherichia coli.. Journal of Bacteriology. 181:197-203. 1999
- Regulation of autoinducer production in Salmonella typhimurium.. Molecular Microbiology Microbiological Sciences. 31:585-595. 1999
- Response regulator output in bacterial chemotaxis.. EMBO Journal. 17:4238-4248. 1998
- Quorum sensing in Escherichia coli and Salmonella typhimurium.. Proceedings of the National Academy of Sciences of the United States of America. 95:7046-7050. 1998
- Receptor-mediated protein kinase activation and the mechanism of transmembrane signaling in bacterial chemotaxis.. EMBO Journal. 16:7231-7240. 1997
- Photoactivation turns green fluorescent protein red.. Current Biology. 7:809-812. 1997
- Active site interference and asymmetric activation in the chemotaxis protein histidine kinase CheA.. Journal of Biological Chemistry. 271:32057-32063. 1996
- Role of alpha-helical coiled-coil interactions in receptor dimerization, signaling, and adaptation during bacterial chemotaxis.. Journal of Biological Chemistry. 271:17966-17973. 1996
- Dimerization is required for the activity of the protein histidine kinase CheA that mediates signal transduction in bacterial chemotaxis.. Journal of Biological Chemistry. 271:939-945. 1996
- Chemosensing and signal transduction in bacteria.. Current Opinion in Neurobiology. 4:474-480. 1994
- Bacterial chemotaxis. The motor connection.. Current Biology. 4:143-144. 1994
- Signal transduction in bacterial chemotaxis.. Journal of Biological Chemistry. 267:19753-19756. 1992
- The Mu transpositional enhancer can function in trans: requirement of the enhancer for synapsis but not strand cleavage.. Cell. 68:1101-1108. 1992
- Stimulation of the Mu DNA strand cleavage and intramolecular strand transfer reactions by the Mu B protein is independent of stable binding of the Mu B protein to DNA.. Journal of Biological Chemistry. 266:17306-17313. 1991
- Stimulation of the Mu A protein-mediated strand cleavage reaction by the Mu B protein, and the requirement of DNA nicking for stable type 1 transpososome formation. In vitro transposition characteristics of mini-Mu plasmids carrying terminal base pair mutations.. Journal of Biological Chemistry. 266:3118-3124. 1991
- Action at a distance in Mu DNA transposition: an enhancer-like element is the site of action of supercoiling relief activity by integration host factor (IHF).. EMBO Journal. 8:3483-3489. 1989
- A protein factor which reduces the negative supercoiling requirement in the Mu DNA strand transfer reaction is Escherichia coli integration host factor.. Journal of Biological Chemistry. 264:3028-3034. 1989
- Mechanism of Mu DNA transposition.. BioEssays. 9:205-208. 1988
- Transpososomes: stable protein-DNA complexes involved in the in vitro transposition of bacteriophage Mu DNA.. Cell. 49:253-262. 1987
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conference paper
- EPIDEMIOLOGY OF STENOTROPHOMONAS MALTOPHILIA INFECTIONS IN ADULTS WITH CYSTIC FIBROSIS (CF): A 30-YEAR SINGLE-CENTRE STUDY. Pediatric Pulmonology. S374-S374. 2017
- PATTERNS OF PSEUDOMONAS AERUGINOSA LOWER AIRWAYS INFECTIONS AND CLINICAL OUTCOMES IN NON-CYSTIC FIBROSIS BRONCHIECTASIS. Pediatric Pulmonology. S363-S363. 2017
- SPUTUM MICROBIOTA PREDICTS FUTURE CLINICAL OUTCOMES IN CYSTIC FIBROSIS: A COHORT STUDY. Pediatric Pulmonology. S362-S363. 2017
- ACTIVATION OF INNATE IMMUNE PATHWAYS BY BACTERIAL PROTEASES: IMPLICATIONS FOR CELIAC DISEASE. Gastroenterology. S71-S71. 2017
- The Microbiome of the Respiratory Tract After Heart Transplantation. Journal of Heart and Lung Transplantation Journal of Heart Transplantation. S50-S50. 2017
- DOES INHALED AZTREONAM LYSINE (AZLI) IMPACT THE CYSTIC FIBROSIS LUNG MICROBIOME?. Pediatric Pulmonology. 306-306. 2016
- EFFECT OF FREEZING SPUTUM ON PSEUDOMONAS AERUGINOSA (PA) POPULATION HETEROGENEITY. Pediatric Pulmonology. 306-307. 2016
- EPIDEMIC PSEUDOMONAS AERUGINOSA: A DRIVING FORCE IN THE CYSTIC FIBROSIS (CF) MICROBIOME?. Pediatric Pulmonology. 330-330. 2016
- Sex Work Alters the Vaginal Microbiome: A Comparison Between Sex Workers and Lower Risk Women from the Same Community in Nairobi, Kenya. AIDS Research and Human Retroviruses. 126-126. 2016
- THE EVOLVING CYSTIC FIBROSIS (CF) MICROBIOME: A LONGITUDINAL COHORT STUDY. Pediatric Pulmonology. 329-330. 2016
- T-cells induced by oral gluten challenge in patients with coeliac disease confirm the in vivo effects of gluten hydrolysed by intestinal bacteria from gnotobiotic mice. European Journal of Immunology. 453-453. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Multiple Sclerosis Lesions Show Perturbations in Cerebral Microbiota. Neurology. 2016
- Colonization of Germ-Free Mice With Human Derived Microbiota Induces Progressive Ultrastructural, Innate, and Functional Changes in the Intestinal Barrier. Gastroenterology. S581-S581. 2016
- Fecal Microbiome Profiles of Ulcerative Colitis Patients With and Without Anxiety and/or Depression. Gastroenterology. S584-S585. 2016
- Immunogenic Gluten Is Modulated by Small Intestinal Bacterial Hydrolysis. Gastroenterology. S304-S304. 2016
- Inflammation-Related Differences in Mucosa-Associated Microbiota and Paracellular Permeability in Crohn's Colitis. Gastroenterology. S582-S582. 2016
- Microbiota From an Active Celiac Donor Modulates Intraepithelial Lymphocyte Numbers and Phenotype in the Mouse Small Intestine. Gastroenterology. S114-S114. 2016
- Enhanced Culturing Techniques Identify Unexpected Pathogens In Patients With Suspected Ventilator-Associated Infections: The Fast Identification Of Pathogens (findpath) Pilot Study. American Journal of Respiratory and Critical Care Medicine. 2016
- CHANGES IN THE STRUCTURE OF THE CYSTIC FIBROSIS MICROBIOME THROUGH TIME: A COHORT STUDY. Pediatric Pulmonology. 339-340. 2015
- CULTURE-ENRICHED METAGENOMIC SEQUENCING OF THE CYSTIC FIBROSIS LUNG MICROBIOTA PROVIDES A MORE THOROUGH UNDERSTANDING OF MICROBIAL PROCESSES DURING PULMONARY EXACERBATION. Pediatric Pulmonology. 305-305. 2015
- DEVELOPMENT AND VALIDATION OF A PCR ASSAY TO DETECT THE PRAIRIE EPIDEMIC STRAIN (PES) OF PSEUDOMONAS AERUGINOSA. Pediatric Pulmonology. 337-337. 2015
- DO INHALED ANTIBIOTICS IMPROVE LUNG FUNCTION THROUGH AN EFFECT ON THE CYSTIC FIBROSIS (CF) MICROBIOME?. Pediatric Pulmonology. 330-331. 2015
- LONGITUDINAL SAMPLING OF PATIENTS WITH CYSTIC FIBROSIS INDICATES CHANGES IN THE MICROBIAL COMMUNITY IN THE DAYS PRIOR TO ONSET OF PULMONARY EXACERBATION. Pediatric Pulmonology. 305-305. 2015
- Distinct Roles of the Mucus Layer and Microbiota in Conferring Innate Host Defense and Susceptibility to Disease. FASEB Journal. 2015
- Fetal and Neonatal Exposure To Nicotine Results in Increased Adiposity: Role of the Gut Microbiome.. Journal of the Society for Gynecologic Investigation Reproductive Sciences. 360A-360A. 2015
- Microbiome Effects on Hematopoietic Eosinophil/Basophil Progenitor Phenotype: Implications for the Pathogenesis of Allergic Inflammation. Journal of Allergy and Clinical Immunology. AB65-AB65. 2015
- The Gut Microbiome in Patients with Anxiety, Depression and Inflammatory Bowel Disease. Neuropsychopharmacology. S289-S289. 2014
- REDUCTION IN P. AERUGINOSA SPUTUM DENSITY DURING A PULMONARY EXACERBATION IN CYSTIC FIBROSIS DOES NOT PREDICT CLINICAL RESPONSE. Pediatric Pulmonology. 250-250. 2014
- A randomized, placebo controlled trial of fecal microbiota therapy in active ulcerative colitis.. Gastroenterology. S159-S159. 2014
- Investigating the microbiome pre and post fecal microbiota therapy from active ulcerative colitis patients in a randomized placebo controlled trial. Gastroenterology. S902-S902. 2014
- The Adoptive Transfer of Anxiety and Gut Dysfunction From IBS Patients to Axenic Mice Through Microbiota Transplantation. Gastroenterology. S845-S845. 2014
- BENEFICIAL EFFECT OF THE PROBIOTIC VSL-3 ON LIVER INJURY-ASSOCIATED SICKNESS BEHAVIOR DEVELOPMENT BY ALTERING SYSTEMIC IMMUNITY AND INHIBITING ACTIVATED MONOCYTES FROM ENTERING THE BRAIN. Journal of Hepatology. S194-S194. 2014
- Specific Crohn's Disease (CD) Associated Risk Alleles Are Associated With the Composition of the Intestinal Microbiota in Healthy First Degree Relatives (FDR) of CD Subjects. Gastroenterology. S57-S57. 2013
- The Relationship Between Common IBD-Associated Risk Alleles and Intestinal Permeability in a Cohort of Healthy First Degree Relatives of Individuals With Crohn's Disease. Gastroenterology. S835-S835. 2013
- alpha-Proteobacteria predominate in the human brain microbiome independent of host immune status. Journal of Neuroimmunology. 137-137. 2012
- Microbial colonization of germ-free mice induces marked change in behaviour that is independent of bacterial diversity. Neurogastroenterology and Motility. 77-77. 2012
- Transfer of IBS phenotype to GERM-free mice through microbiota transplantation. Neurogastroenterology and Motility. 33-33. 2012
- EXPLORING THE STREPTOCOCCUS ANTIBIOTIC RESISTOME IN ADULT CYSTIC FIBROSIS PATIENTS. Pediatric Pulmonology. 323-323. 2011
- MECHANISMS OF ANTIMICROBIAL RESISTANCE IN CYSTIC FIBROSIS AIRWAY ISOLATES OF THE STREPTOCOCCUS MILLERI GROUP. Pediatric Pulmonology. 329-329. 2011
- THE CYSTIC FIBROSIS LUNG MICROBIOME EXPOSES NOVEL MEMBERS OF THE GENUS STREPTOCOCCUS. Pediatric Pulmonology. 325-325. 2010
- CHARACTERIZATION OF STREPTOCOCCUS MILLERI ISOLATES FROM ADULT CYSTIC FIBROSIS PATIENTS. Pediatric Pulmonology. 340-341. 2009
- ESCHERICHEA COLI BIOFILM FORMATION AND SUSCEPTIBILITY IN RESPONSE TO INCREASED SHEAR STRESSES. PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE 2008, PTS A AND B. 979-980. 2009
- REAL-TIME PCR ASSAYS FOR DETECTION OF THE STREPTOCOCCUS MILLERI GROUP FROM CF CLINICAL SPECIMENS USING TARGETS FOR CPN60 AND 16S RRNA GENES. Pediatric Pulmonology. 335-335. 2009
- THE CULTURED MICROBIOME OF CYSTIC FIBROSIS AIRWAYS. Pediatric Pulmonology. 313-313. 2009
- WHOLE GENOME SEQUENCING AND COMPARATIVE GENOMIC ANALYSIS OF THE STREPTOCOCCUS MILLERI GROUP. Pediatric Pulmonology. 335-335. 2009
- Development of a solid media for the selective isolation of Streptococcus milleri from cystic fibrosis (CF) sputum. Pediatric Pulmonology. 323-324. 2007
- Polymicrobial interactions in CF: Synergies and antagonisms in host response. Pediatric Pulmonology. 150-151. 2007
- Identification of replication sites via a nonparametric method in bacteria. METMBS'03: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON MATHEMATICS AND ENGINEERING TECHNIQUES IN MEDICINE AND BIOLOGICAL SCIENCES. 17-21. 2003
- GeneVis: Visualization tools for genetic regulatory network dynamics. VIS 2002: IEEE VISUALIZATION 2002, PROCEEDINGS. 243-250. 2002