Journal article
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes
Abstract
Short-read sequencing can provide detection of multiple genomic determinants of antimicrobial resistance from single bacterial genomes and metagenomic samples. Despite its increasing application in human, animal, and environmental microbiology, including human clinical trials, the performance of short-read Illumina sequencing for antimicrobial resistance gene (ARG) detection, including resistance-conferring single nucleotide polymorphisms …
Authors
Rooney AM; Raphenya AR; Melano RG; Seah C; Yee NR; MacFadden DR; McArthur AG; Schneeberger PHH; Coburn B
Journal
mSystems, Vol. 7, No. 3, pp. e00022–e00022
Publisher
American Society for Microbiology
Publication Date
June 28, 2022
DOI
10.1128/msystems.00022-22
ISSN
2379-5077