Controls on high-frequency sequences formed during super-greenhouse conditions in the Late Cretaceous Western Interior Seaway remain equivocal because of the active foreland basin tectonic setting and the lack of direct evidence of polar glaciations to support a glacio-eustatic origin. This paper quantifies eustatic sea-level changes based on high-resolution sequence stratigraphic analysis and improved chronometry of shallow marine deposits of the Late Cretaceous Gallup Sandstone in New Mexico, USA. Backstripping techniques remove tectonic and compactional subsidence and enable quantification of the magnitude of eustatic sea-level change, that allow evaluation of the dominant controls on the high-frequency sequences to resolve the role of orbitally controlled, climate-driven eustasy versus tectonics. Sixty-five parasequences, constituting 29 parasequence sets and 12 sequences are identified in the ∼1.2 m.y. duration of the Late Cretaceous Gallup system. New 40Ar/39Ar dating of bentonites constrains the durations of the individual parasequences, parasequence sets, and sequences, and that these match Milankovitch periodicity, indicating an orbital climate control. The magnitudes of sea-level changes between parasequences range between −28 m and +22 m, which are compatible with hypotheses of both aquifer and glacio-eustasy. Aquifer-eustasy predicts a reciprocal relationship between floodplain cycles and shallow marine sequences, such that aquifer drawdown and falling water tables should correlate to rising sea levels (highstands), whereas increased aquifer storage and rising water tables should correlate to falling sea levels (lowstands). Our preliminary observations show synchronous, versus reciprocal, relationships that may be more compatible with a glacio-eustatic origin. The results of this study support the hypothesis that the Cretaceous greenhouse was marked by high-frequency, low-amplitude glaciations driven by orbital climate cycles, but further work is required to evaluate the contribution of aquifer-eustasy.