Yingfu Li - McMaster Experts

Affiliations

Faculty of Health Sciences, McMaster University
Member, Fraunhofer Project Centre for Biomedical Engineering and Advanced Manufacturing at McMaster, McMaster University
Member, Michael G. DeGroote Institute for Infectious Disease Research (IIDR), Faculty of Health Sciences
Professor, Biochemistry & Biomedical Sciences, Faculty of Health Sciences
Associate Member, Chemical Engineering, Faculty of Engineering
Member, Biointerfaces Institute, Faculty of Science
Member, Origins Institute, Faculty of Science
Joint Appointment, Chemistry & Chemical Biology, Faculty of Science

Research Areas

Analytical biochemistry (RA)
Biochemistry (RA)
Chemical biology (RA)
Medical molecular engineering of nucleic acids and proteins (RA)
Microbiology (RA)
Sensor technology (chemical aspects) (RA)

Scholarly Activity in McMaster Experts

Co-author Network

Scholarly Activity
Research
Teaching
Background
Contact
View All

selected scholarly activity

books
- Foreword 2019
chapters
- Bacterial Detection with Functional Nucleic Acids: Escherichia coli as a Case Study. 31-45. 2024
- DNAzyme-Based Biosensors and Their Applications in Monitoring Environmental Water Sources. 171-214. 2023
- DNAzyme-Based Biosensors and Their Applications in Monitoring Environmental Water Sources. 171-214. 2022
- DNAzymes: Synthetic Enzymes Made of DNA. 1-16. 2019
- Selection and Application of Catalytically Active Oligonucleotides. 75-112. 2017
- Fluorescence Sensing With Functional Nucleic Acids. 227-236. 2017
- Selection and application of catalytically active oligonucleotides. 75-112. 2016
- Small Size, Big Impact: Bacterial Functional Nucleic Acids and Their Applications. RNA Technologies. 309-323. 2014
- Small Size, Big Impact: Bacterial Functional Nucleic Acids and Their Applications. RNA Technologies. 309-323. 2014
- Exploration of Structure-Switching in the Design of Aptamer Biosensors. Advances in Biochemical Engineering/Biotechnology. 69-92. 2013
- Making Sense of Catalysis: The Potential of DNAzymes as Biosensors. 190-210. 2012
- Functional Nucleic Acids for Fluorescence-Based Biosensing Applications. 201-221. 2011
- Nucleic Acids as Detection Tools. 401-431. 2010
- Fluorescent Ribozyme and Deoxyribozyme Sensors. 131-153. 2009
- Introductory Remarks. 3-9. 2009
- The Use of Functional Nucleic Acids in Solid-Phase Fluorimetric Assays. 309-342. 2009
- Aptamers and Their Potential as Recognition Elements for the Detection of Bacteria. 689-714. 2008
- Deoxyribozymes: Catalytically Active DNA Molecules. 228-261. 2006
- Fluorescence-Signaling Nucleic Acid-Based Sensors. 49-72. 2006
conferences
- LISzyme Biosensors: DNAzymes Embedded in an Anti-biofouling Platform for Hands-free Real-Time Detection of Bacterial Contamination in Milk. AIChE Annual Meeting Conference Proceedings. 29-37. 2023
- Integrating aptamers with paper-based microscale analytical devices for biomedical monitoring. 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2019. 1700-1701. 2019
- Biosensing applications incorporating synthetic DNA molecules with catalytic and binding properties. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2018
- A microfluidic sample preparation device for pre-concentration and cell lysis using a nanoporous membrane. 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013. 1105-1107. 2013
- 132 EFFECTS OF OXYGEN TENSION, MEDIUM, AND WELL OF THE WELL ON IN VITRO DEVELOPMENT OF THE MOUSE EMBRYO. Reproduction, Fertility and Development. 170-170. 2011
- Research on surrounding rock control techniques of the second gob-side entry retaining for Y-type ventilation. MINE SAFETY AND EFFICIENT EXPLOITATION FACING CHALLENGES OF THE 21ST CENTURY. 23-31. 2010
- Roadside supporting design for gob-side entry retaining and engineering practice. MINE SAFETY AND EFFICIENT EXPLOITATION FACING CHALLENGES OF THE 21ST CENTURY. 243-251. 2010
- Nanoparticles with immobilized biosensors for bioactive papers. International Conference on Nanotechnology for the Forest Products Industry 2009. 1361-1401. 2009
- Fringe spacing controllable long-period grating assisted Michelson interferometer for high sensitivity refractometry. Proceedings of SPIE - The International Society for Optical Engineering. 2008
- Engineering amino acid responsive riboswitch biosensors. Biochemistry and Cell Biology. 185-185. 2008
- Using flow cytometry to select for artificial riboswitches. Biochemistry and Cell Biology. 202-202. 2008
- Digital Fabrication of Bioactive Paper. NIP24/DIGITAL FABRICATION 2008: 24TH INTERNATIONAL CONFERENCE ON DIGITAL PRINTING TECHNOLOGIES, TECHNICAL PROGRAM AND PROCEEDINGS. 508-510. 2008
- Cladding Reduced Long-Period Grating In-Fiber Michelson Interferometer as Immunosensor. Optics InfoBase Conference Papers. 2007
- Cladding Reduced Long-Period Grating In-Fiber Michelson Interferometer as Immunosensor. Optics InfoBase Conference Papers. 2007
- Cladding reduced long-period grating in-fiber Michelson interferometer as immunosensor. Optics InfoBase Conference Papers. btue5. 2007
- Orthogonal numerical analysis of factors of surrounding rock deformation of deep roadway under dynamic pressure. MINE HAZARDS PREVENTION AND CONTROL TECHNOLOGY. 318-323. 2007
- High-sensitivity refractive index sensor based on low order cladding mode resonance in long-period grating with high refractive index coating. Proceedings of SPIE - The International Society for Optical Engineering. 2006
- High Sensitivity Long-Period Grating Michelson Refractometer with Reduced Fiber Cladding. Optics InfoBase Conference Papers. 2006
- High sensitivity long-period grating michelson refractometer with reduced fiber cladding. Optics InfoBase Conference Papers. tue93. 2006
- Sensitivity enhanced long-period grating refractive index sensor with refractive index modified cladding layer. Proceedings of SPIE - The International Society for Optical Engineering. 59701h-59701h-9. 2005
- Immobilized DNA biosensor based on evanescent wave long-period fiber gratings. Proceedings of SPIE - The International Society for Optical Engineering. 109-116. 2004
- Characterization of the conformational changes of a tripartite molecular beacon. Proceedings of SPIE - The International Society for Optical Engineering. 184-194. 2004
- DNA-catalyzed DNA phosphorylation. The FASEB Journal. A1337-A1337. 1999
- A small and efficient catalytic DNA. STRUCTURE, MOTION, INTERACTION AND EXPRESSION OF BIOLOGICAL MACROMOLECULES, VOL 1. 139-149. 1998
journal articles
- Elucidating Evolutionary Mechanisms and Variants of the Hammerhead Ribozyme Using In Vitro Selection. ChemBioChem. 25:e202400432. 2024
- Making target sites in large structured RNAs accessible to RNA-cleaving DNAzymes through hybridization with synthetic DNA oligonucleotides.. Nucleic Acids Research (NAR). 52:11177-11187. 2024
- A Comparison of DNA-DNA Hybridization Kinetics in Complex Media on Planar and Nanostructured Electrodes.. ACS Sensors. 9:4599-4607. 2024
- Protein-Templated Click Ligation Reaction Triggered by Protein-Split Aptamer Interactions.. Analytical Chemistry. 96:15414-15421. 2024
- Fighting Mutations with Mutations: Evolutionarily Adapting a DNA Aptamer for High-Affinity Recognition of Mutated Spike Proteins of SARS-CoV-2.. Angewandte Chemie International Edition. e202415226. 2024
- Zwitter-repel: An anti-fouling coating promoting electrochemical biosensing in biological fluids. Chemical Engineering Journal. 495:153522-153522. 2024
- Evolution of a bispecific G-quadruplex-forming circular aptamer to block IL-6/sIL-6R interaction for inflammation inhibition. Chemical Science. 15:13011-13020. 2024
- Higher Affinity Enables More Accurate Detection of SARS‐CoV‐2 in Human Saliva Using Aptamer‐based Litmus Test. Angewandte Chemie International Edition. e202407049. 2024
- A Zwitterionic Anti-Fouling Coating Promotes Electrochemical Biosensing in Complex Media. ECS Meeting Abstracts. MA2024-01:2722-2722. 2024
- Smart food packaging commercialization. Nature Reviews Bioengineering. 2:535-537. 2024
- DNA-Templated Click Ligation Chain Reaction Catalyzed by Heterogeneous Cu₂O for Enzyme-Free Amplification and Ultrasensitive Detection of Nucleic Acids. Analytical Chemistry. 96:10028-10037. 2024
- High‐Precision Viral Detection Using Electrochemical Kinetic Profiling of Aptamer‐Antigen Recognition in Clinical Samples and Machine Learning. Angewandte Chemie International Edition. 63:e202400413. 2024
- High‐Precision Viral Detection Using Electrochemical Kinetic Profiling of Aptamer‐Antigen Recognition in Clinical Samples and Machine Learning. Angewandte Chemie International Edition. 136. 2024
- An Aptamer-Based Hydrogel Sensing Platform Enabling Low Micromolar Detection of Small Molecules Using Low Sample Volumes. ACS Applied Materials & Interfaces. 16:22794-22808. 2024
- Development of Better Aptamers: Structured Library Approaches, Selection Methods, and Chemical Modifications. Angewandte Chemie International Edition. 63:e202318665. 2024
- Development of Better Aptamers: Structured Library Approaches, Selection Methods, and Chemical Modifications. Angewandte Chemie International Edition. 136. 2024
- Comprehensive fluorescence profiles of contamination-prone foods applied to the design of microcontact-printed in situ functional oligonucleotide sensors. Scientific Reports. 14:8277. 2024
- Material Breakthroughs in Smart Food Monitoring: Intelligent Packaging and On‐Site Testing Technologies for Spoilage and Contamination Detection. Advanced Materials. 36:e2300875. 2024
- Virus-Assembled Biofunctional Microarrays with Hierarchical 3D Nano-Reticular Network. Advanced Functional Materials. 2024
- (Invited) Real Time Monitoring of Target Binding for the Development of Clinical Diagnostic Tests. ECS Meeting Abstracts. MA2023-02:2960-2960. 2023
- A Colorimetric Biosensing Platform with Aptamers, Rolling Circle Amplification and Urease‐Mediated Litmus Test. Angewandte Chemie International Edition. 62:e202315185. 2023
- A Colorimetric Biosensing Platform with Aptamers, Rolling Circle Amplification and Urease‐Mediated Litmus Test. Angewandte Chemie International Edition. 135. 2023
- Detecting Legionella pneumophila in Cooling Tower Water Samples with a DNAzyme/Bead‐Based Fluorescence Assay. Analysis & Sensing. 3. 2023
- An RNA‐Cleaving DNAzyme That Requires an Organic Solvent to Function. Angewandte Chemie International Edition. 62:e202310941. 2023
- An RNA‐Cleaving DNAzyme That Requires an Organic Solvent to Function. Angewandte Chemie International Edition. 135. 2023
- Advancing In Situ Food Monitoring through a Smart Lab‐in‐a‐Package System Demonstrated by the Detection of Salmonella in Whole Chicken. Advanced Materials. 35:e2302641. 2023
- Nucleic Acid Enzyme‐Activated CRISPR‐Cas12a With Circular CRISPR RNA for Biosensing. Small. 19:e2303007. 2023
- Comparative Characterization of Diverse DNA Aptamers for Recognition of Spike Proteins of Multiple SARS‐CoV‐2 Variants. Analysis & Sensing. 3. 2023
- Cover Feature: Comparative Characterization of Diverse DNA Aptamers for Recognition of Spike Proteins of Multiple SARS‐CoV‐2 Variants (Anal. Sens. 5/2023). Analysis & Sensing. 3. 2023
- Expanding research and development of functional nucleic acids for agricultural applications. Advanced Agrochem. 2:197-199. 2023
- Functional nucleic acid-based biosensors for virus detection. Advanced Agrochem. 2:246-257. 2023
- A Fluorogenic DNAzyme for A Thermally Stable Protein Biomarker from Fusobacterium nucleatum, a Human Bacterial Pathogen. Angewandte Chemie International Edition. 62:e202306272. 2023
- A Fluorogenic DNAzyme for A Thermally Stable Protein Biomarker from Fusobacterium nucleatum, a Human Bacterial Pathogen. Angewandte Chemie International Edition. 135. 2023
- Electrochemical Biosensors for Clinical Analysis. ECS Meeting Abstracts. MA2023-01:2641-2641. 2023
- Integration of Photoelectrochemical Signal Transduction with RNA-Cleaving Dnazymes for Culture-Free Detection of Bacteria. ECS Meeting Abstracts. MA2023-01:2635-2635. 2023
- Liquid NanoBiosensors Enable One‐Pot Electrochemical Detection of Bacteria in Complex Matrices. Advanced Science. 10:e2207223. 2023
- Cover Feature: In Vitro Selection and Characterization of a DNAzyme Probe for Diverse Pathogenic Strains of Clostridium difficile (Chem. Eur. J. 36/2023). Chemistry - A European Journal. 29. 2023
- In Vitro Selection and Characterization of a DNAzyme Probe for Diverse Pathogenic Strains of Clostridium difficile. Chemistry - A European Journal. 29:e202300240. 2023
- Detection of Large Genomic RNA via DNAzyme‐Mediated RNA Cleavage and Rolling Circle Amplification: SARS‐CoV‐2 as a Model. Chemistry - A European Journal. 29:e202300075. 2023
- A Simple Colorimetric Au‐on‐Au Tip Sensor with a New Functional Nucleic Acid Probe for Food‐borne Pathogen Salmonella typhimurium. Angewandte Chemie International Edition. 135. 2023
- A Simple Colorimetric Au‐on‐Au Tip Sensor with a New Functional Nucleic Acid Probe for Food‐borne Pathogen Salmonella typhimurium. Angewandte Chemie International Edition. 62:e202300828. 2023
- Integrating Water Purification with Electrochemical Aptamer Sensing for Detecting SARS-CoV-2 in Wastewater. ACS Sensors. 8:1558-1567. 2023
- Programming synthetic DNA molecules for building and breaking heterostructures between TiO2 nanomaterials for photoelectrochemical bacterial detection. Nano Today. 49:101783-101783. 2023
- Electrochemical DNAzyme-based biosensors for disease diagnosis. Biosensors and Bioelectronics. 224:114983-114983. 2023
- Chemical and structural modification of RNA-cleaving DNAzymes for efficient biosensing and biomedical applications. TrAC. Trends in analytical chemistry. 159:116910-116910. 2023
- Engineering a Ligase Binding DNA Aptamer into a Templating DNA Scaffold to Guide the Selective Synthesis of Circular DNAzymes and DNA Aptamers. Journal of the American Chemical Society. 145:2630-2637. 2023
- Discovery and translation of functional nucleic acids for clinically diagnosing infectious diseases: Opportunities and challenges. TrAC. Trends in analytical chemistry. 158:116886-116886. 2023
- Three on Three: Universal and High-Affinity Molecular Recognition of the Symmetric Homotrimeric Spike Protein of SARS-CoV-2 with a Symmetric Homotrimeric Aptamer. Journal of the American Chemical Society. 144:23465-23473. 2022
- Development of Nucleic‐Acid‐Based Electrochemical Biosensors for Clinical Applications. Angewandte Chemie International Edition. 61:e202212496. 2022
- Development of Nucleic‐Acid‐Based Electrochemical Biosensors for Clinical Applications. Angewandte Chemie International Edition. 134. 2022
- Functional nucleic acid biosensors utilizing rolling circle amplification. Chemical Society Reviews. 51:9009-9067. 2022
- (Invited) Developing Universal Sensing Strategies-Combining Functional Nucleic Acids with Photoelectrochemical and Electrochemical Signal Transduction. ECS Meeting Abstracts. MA2022-02:2225-2225. 2022
- An all-deoxyribonucleic acid circuit for detection of human telomerase activity in solution and on paper. Frontiers in Analytical Science. 2. 2022
- Aptamers for SARS‐CoV‐2: Isolation, Characterization, and Diagnostic and Therapeutic Developments. Analysis & Sensing. 2:e202200012. 2022
- Cover Feature: Aptamers for SARS‐CoV‐2: Isolation, Characterization, and Diagnostic and Therapeutic Developments (Anal. Sens. 5/2022). Analysis & Sensing. 2:e202200035. 2022
- Functional nucleic acids for pathogen detection. Scientia Sinica Chimica. 52:1502-1512. 2022
- A DNA Barcode‐Based Aptasensor Enables Rapid Testing of Porcine Epidemic Diarrhea Viruses in Swine Saliva Using Electrochemical Readout. Angewandte Chemie International Edition. 61:e202204252. 2022
- A DNA Barcode‐Based Aptasensor Enables Rapid Testing of Porcine Epidemic Diarrhea Viruses in Swine Saliva Using Electrochemical Readout. Angewandte Chemie International Edition. 134. 2022
- Innenrücktitelbild: A DNA Barcode‐Based Aptasensor Enables Rapid Testing of Porcine Epidemic Diarrhea Viruses in Swine Saliva Using Electrochemical Readout (Angew. Chem. 31/2022). Angewandte Chemie International Edition. 134. 2022
- Inside Back Cover: A DNA Barcode‐Based Aptasensor Enables Rapid Testing of Porcine Epidemic Diarrhea Viruses in Swine Saliva Using Electrochemical Readout (Angew. Chem. Int. Ed. 31/2022). Angewandte Chemie International Edition. 61. 2022
- One Solution for All: Searching for Universal Aptamers for Constantly Mutating Spike Proteins of SARS‐CoV‐2. ChemMedChem. 17:e202200166. 2022
- Quantifying DNA damage on paper sensors via controlled template-independent DNA polymerization. Chemical Science. 13:6496-6501. 2022
- DNAzyme-Immobilizing Microgel Magnetic Beads Enable Rapid, Specific, Culture-Free, and Wash-Free Electrochemical Quantification of Bacteria in Untreated Urine. ACS Sensors. 7:985-994. 2022
- A Universal DNA Aptamer that Recognizes Spike Proteins of Diverse SARS‐CoV‐2 Variants of Concern. Chemistry - A European Journal. 28:e202200078. 2022
- A Universal DNA Aptamer that Recognizes Spike Proteins of Diverse SARS‐CoV‐2 Variants of Concern. Chemistry - A European Journal. 28:e202200524. 2022
- Front Cover: A Universal DNA Aptamer that Recognizes Spike Proteins of Diverse SARS‐CoV‐2 Variants of Concern (Chem. Eur. J. 15/2022). Chemistry - A European Journal. 28:e202200523. 2022
- A Smartphone Operated Electrochemical Reader and Actuator that Streamlines the Operation of Electrochemical Biosensors. ECS Sensors Plus. 1:014601-014601. 2022
- Aptamers from random sequence space: Accomplishments, gaps and future considerations. Analytica Chimica Acta. 1196:339511-339511. 2022
- Investigation of discordant SARS-CoV-2 RT-PCR results using minimally processed saliva. Scientific Reports. 12:2806. 2022
- LISzyme Biosensors: DNAzymes Embedded in an Anti-biofouling Platform for Hands-free Real-Time Detection of Bacterial Contamination in Milk. ACS Nano. 16:29-37. 2022
- A Lateral Flow Test for Staphylococcus aureus in Nasal Mucus Using a New DNAzyme as the Recognition Element. Angewandte Chemie International Edition. 61:e202112346. 2022
- A Lateral Flow Test for Staphylococcus aureus in Nasal Mucus Using a New DNAzyme as the Recognition Element. Angewandte Chemie International Edition. 134. 2022
- Target‐Mediated 5’‐Exonuclease Digestion of DNA Aptamers with RecJ to Modulate Rolling Circle Amplification for Biosensing. ChemBioChem. 23:e202100476. 2022
- A DNA Nanoflower‐Assisted Separation‐Free Nucleic Acid Detection Platform with a Commercial Pregnancy Test Strip. Angewandte Chemie International Edition. 60:24823-24827. 2021
- A DNA Nanoflower‐Assisted Separation‐Free Nucleic Acid Detection Platform with a Commercial Pregnancy Test Strip. Angewandte Chemie International Edition. 133:25027-25031. 2021
- High‐Affinity Dimeric Aptamers Enable the Rapid Electrochemical Detection of Wild‐Type and B.1.1.7 SARS‐CoV‐2 in Unprocessed Saliva. Angewandte Chemie International Edition. 60:24266-24274. 2021
- High‐Affinity Dimeric Aptamers Enable the Rapid Electrochemical Detection of Wild‐Type and B.1.1.7 SARS‐CoV‐2 in Unprocessed Saliva. Angewandte Chemie International Edition. 133:24468-24476. 2021
- Monitoring Food Contamination in Real Time Using Printable Dnazyme Sensors. ECS Meeting Abstracts. MA2021-02:1577-1577. 2021
- Target‐Dependent Protection of DNA Aptamers against Nucleolytic Digestion Enables Signal‐On Biosensing with Toehold‐Mediated Rolling Circle Amplification. Chemistry - A European Journal. 27:14543-14549. 2021
- DNAzyme-Based Biosensors: Immobilization Strategies, Applications, and Future Prospective. ACS Nano. 15:13943-13969. 2021
- Rapid and Specific Imaging of Extracellular Signaling Molecule Adenosine Triphosphate with a Self-Phosphorylating DNAzyme. Journal of the American Chemical Society. 143:15084-15090. 2021
- Functional Nucleic Acids for Pathogenic Bacteria Detection. Accounts of Chemical Research. 54:3540-3549. 2021
- Integrating programmable DNAzymes with electrical readout for rapid and culture-free bacterial detection using a handheld platform. Nature Chemistry. 13:895-901. 2021
- Biosensing with DNAzymes. Chemical Society Reviews. 50:8954-8994. 2021
- Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library. Nucleic Acids Research (NAR). 49:7267-7279. 2021
- Functional Nucleic Acids Under Unusual Conditions. ChemBioChem. 22:2368-2383. 2021
- One-pot high-yield synthesis of Pd nanocubes for Pd-Ir nanocube-based immunoassay of nucleocapsid protein from SARS-CoV-2. Analytical and Bioanalytical Chemistry. 413:4635-4644. 2021
- Reagentless and Ultrasensitive Electrochemical Dnazyme Based Sensing Platform for Clinical Detection of Uropathogenic Escherichia coli. ECS Meeting Abstracts. MA2021-01:1369-1369. 2021
- Fast-responding functional DNA superstructures for stimuli-triggered protein release. Chemical Science. 12:8282-8287. 2021
- A Syringe‐Based DNAzyme Sensor for Bacterial Detection. Analysis & Sensing. 1:95-100. 2021
- Cover Feature: A Syringe‐Based DNAzyme Sensor for Bacterial Detection (2/2021). Analysis & Sensing. 1:72-72. 2021
- DNAzymes as key components of biosensing systems for the detection of biological targets. Biosensors and Bioelectronics. 177:112972-112972. 2021
- A Highly Specific DNA Aptamer for RNase H2 from Clostridium difficile. ACS Applied Materials & Interfaces. 13:9464-9471. 2021
- Selection and Characterization of an RNA‐Cleaving DNAzyme Activated by Legionella pneumophila. Angewandte Chemie International Edition. 60:4782-4788. 2021
- Selection and Characterization of an RNA‐Cleaving DNAzyme Activated by Legionella pneumophila. Angewandte Chemie International Edition. 133:4832-4838. 2021
- Facile Synthesis of Pd-Ir Nanocubes for Biosensing. Frontiers in Chemistry. 9:775220. 2021
- Back Cover: Engineering Micrometer‐Sized DNA Tracks for High‐Speed DNA Synthesis and Biosensing (Angew. Chem. Int. Ed. 51/2020). Angewandte Chemie International Edition. 59:23344-23344. 2020
- Engineering Micrometer‐Sized DNA Tracks for High‐Speed DNA Synthesis and Biosensing. Angewandte Chemie International Edition. 59:22947-22951. 2020
- Engineering Micrometer‐Sized DNA Tracks for High‐Speed DNA Synthesis and Biosensing. Angewandte Chemie International Edition. 132:23147-23151. 2020
- Rücktitelbild: Engineering Micrometer‐Sized DNA Tracks for High‐Speed DNA Synthesis and Biosensing (Angew. Chem. 51/2020). Angewandte Chemie International Edition. 132:23548-23548. 2020
- Evolution of a highly functional circular DNA aptamer in serum. Nucleic Acids Research (NAR). 48:10680-10690. 2020
- An Effective Method for Quantifying RNA Expression of IbsC‐SibC, a Type I Toxin‐Antitoxin System in Escherichia coli. ChemBioChem. 21:3120-3130. 2020
- Ribbon of DNA Lattice on Gold Nanoparticles for Selective Drug Delivery to Cancer Cells. Angewandte Chemie International Edition. 59:14584-14592. 2020
- Ribbon of DNA Lattice on Gold Nanoparticles for Selective Drug Delivery to Cancer Cells. Angewandte Chemie International Edition. 132:14692-14700. 2020
- In Vitro Selection of New DNA Aptamers for Human Vascular Endothelial Growth Factor 165. ChemBioChem. 21:2029-2036. 2020
- A Multi‐component All‐DNA Biosensing System Controlled by a DNAzyme. Angewandte Chemie International Edition. 59:10401-10405. 2020
- A Multi‐component All‐DNA Biosensing System Controlled by a DNAzyme. Angewandte Chemie International Edition. 132:10487-10491. 2020
- Circular Nucleic Acids: Discovery, Functions and Applications. ChemBioChem. 21:1547-1566. 2020
- Back Cover: In Vitro Selection of a DNA Aptamer Targeting Degraded Protein Fragments for Biosensing (Angew. Chem. Int. Ed. 20/2020). Angewandte Chemie International Edition. 59:7968-7968. 2020
- In Vitro Selection of a DNA Aptamer Targeting Degraded Protein Fragments for Biosensing. Angewandte Chemie International Edition. 59:7706-7710. 2020
- In Vitro Selection of a DNA Aptamer Targeting Degraded Protein Fragments for Biosensing. Angewandte Chemie International Edition. 132:7780-7784. 2020
- Rücktitelbild: In Vitro Selection of a DNA Aptamer Targeting Degraded Protein Fragments for Biosensing (Angew. Chem. 20/2020). Angewandte Chemie International Edition. 132:8042-8042. 2020
- Ultrasensitive Electrochemical Dnazyme Based Sensing Platform for Clinical Detection of Uropathogenic Escherichia coli. ECS Meeting Abstracts. MA2020-01:1865-1865. 2020
- Advances in functional nucleic acid based paper sensors. Journal of Materials Chemistry B. 8:3213-3230. 2020
- Protein‐Mediated Suppression of Rolling Circle Amplification for Biosensing with an Aptamer‐Containing DNA Primer. Chemistry - A European Journal. 26:5085-5092. 2020
- Highly Sensitive RNA‐Cleaving DNAzyme Sensors from Surface‐to‐Surface Product Enrichment. ChemBioChem. 21:632-637. 2020
- Selection and applications of synthetic functional DNAs for bacterial detection. TrAC. Trends in analytical chemistry. 124:115785-115785. 2020
- An Unintentional Discovery of a Fluorogenic DNA Probe for Ribonuclease I. ChemBioChem. 21:464-468. 2020
- Front Cover: An Unintentional Discovery of a Fluorogenic DNA Probe for Ribonuclease I (ChemBioChem 4/2020). ChemBioChem. 21:428-428. 2020
- A DNA Switch for Detecting Single Nucleotide Polymorphism within a Long DNA Sequence Under Denaturing Conditions. Chemistry - A European Journal. 26:592-596. 2020
- A DNA Switch for Detecting Single Nucleotide Polymorphism within a Long DNA Sequence Under Denaturing Conditions. Chemistry - A European Journal. 26:568-568. 2020
- Front Cover: A DNA Switch for Detecting Single Nucleotide Polymorphism within a Long DNA Sequence Under Denaturing Conditions (Chem. Eur. J. 3/2020). Chemistry - A European Journal. 26:564-564. 2020
- Biosensors Made of Synthetic Functional Nucleic Acids Toward Better Human Health. Analytical Chemistry. 92:327-344. 2020
- Aptamer-Based Biosensors for Environmental Monitoring. Frontiers in Chemistry. 8:434. 2020
- Unraveling Determinants of Affinity Enhancement in Dimeric Aptamers for a Dimeric Protein. Scientific Reports. 9:17824. 2019
- A DNAzyme‐Based Colorimetric Paper Sensor for Helicobacter pylori. Angewandte Chemie International Edition. 58:9907-9911. 2019
- A DNAzyme‐Based Colorimetric Paper Sensor for Helicobacter pylori. Angewandte Chemie International Edition. 131:10012-10016. 2019
- In Vitro Selection of Circular DNA Aptamers for Biosensing Applications. Angewandte Chemie International Edition. 58:8013-8017. 2019
- In Vitro Selection of Circular DNA Aptamers for Biosensing Applications. Angewandte Chemie International Edition. 131:8097-8101. 2019
- Investigation of RNA structure-switching aptamers in tunable sol–gel-derived materials. Journal of Sol-Gel Science and Technology. 89:234-243. 2019
- Discovery of Butyrylcholinesterase-Activated Near-Infrared Fluorogenic Probe for Live-Cell and In Vivo Imaging. ACS Sensors. 3:2118-2128. 2018
- Self‐Assembled Functional DNA Superstructures as High‐Density and Versatile Recognition Elements for Printed Paper Sensors. Angewandte Chemie International Edition. 57:12440-12443. 2018
- Self‐Assembled Functional DNA Superstructures as High‐Density and Versatile Recognition Elements for Printed Paper Sensors. Angewandte Chemie International Edition. 130:12620-12623. 2018
- Graphene-DNAzyme-based fluorescent biosensor for Escherichia coli detection. MRS Communications. 8:687-694. 2018
- Target‐Induced Catalytic Assembly of Y‐Shaped DNA and Its Application for In Situ Imaging of MicroRNAs. Angewandte Chemie International Edition. 57:9739-9743. 2018
- Target‐Induced Catalytic Assembly of Y‐Shaped DNA and Its Application for In Situ Imaging of MicroRNAs. Angewandte Chemie International Edition. 130:9887-9891. 2018
- A Paper Sensor Printed with Multifunctional Bio/Nano Materials. Angewandte Chemie International Edition. 57:4549-4553. 2018
- A Paper Sensor Printed with Multifunctional Bio/Nano Materials. Angewandte Chemie International Edition. 130:4639-4643. 2018
- DNAzyme Feedback Amplification: Relaying Molecular Recognition to Exponential DNA Amplification. Chemistry - A European Journal. 24:4473-4479. 2018
- Frontispiece: DNAzyme Feedback Amplification: Relaying Molecular Recognition to Exponential DNA Amplification. Chemistry - A European Journal. 24. 2018
- DNAzymes: Selected for Applications. Small Methods. 2. 2018
- Selection and characterization of DNA aptamers for detection of glutamate dehydrogenase from Clostridium difficile. Biochimie. 145:151-157. 2018
- Serendipitous Discovery of a Guanine-rich DNA Molecule with a Highly Stable Structure in Urea. Scientific Reports. 8:1935. 2018
- Colorimetric Detection of Uranyl Using a Litmus Test. Frontiers in Chemistry. 6:332. 2018
- A Printed Multicomponent Paper Sensor for Bacterial Detection. Scientific Reports. 7:12335. 2017
- Discovery and Biosensing Applications of Diverse RNA-Cleaving DNAzymes. Accounts of Chemical Research. 50:2273-2283. 2017
- Innentitelbild: Sol–Gel‐Derived Biohybrid Materials Incorporating Long‐Chain DNA Aptamers (Angew. Chem. 36/2017). Angewandte Chemie International Edition. 129:10746-10746. 2017
- Inside Cover: Sol–Gel‐Derived Biohybrid Materials Incorporating Long‐Chain DNA Aptamers (Angew. Chem. Int. Ed. 36/2017). Angewandte Chemie International Edition. 56:10610-10610. 2017
- Sol–Gel‐Derived Biohybrid Materials Incorporating Long‐Chain DNA Aptamers. Angewandte Chemie International Edition. 129:10826-10830. 2017
- Sol–Gel‐Derived Biohybrid Materials Incorporating Long‐Chain DNA Aptamers. Angewandte Chemie International Edition. 56:10686-10690. 2017
- Optical biosensors utilizing graphene and functional DNA molecules. Journal of Materials Research. 32:2973-2983. 2017
- Detection of DNA Amplicons of Polymerase Chain Reaction Using Litmus Test. Scientific Reports. 7:3110. 2017
- A DNAzyme Feedback Amplification Strategy for Biosensing. Angewandte Chemie International Edition. 129:6238-6242. 2017
- A DNAzyme Feedback Amplification Strategy for Biosensing. Angewandte Chemie International Edition. 56:6142-6146. 2017
- RNA Protection is Effectively Achieved by Pullulan Film Formation. ChemBioChem. 18:502-505. 2017
- Automating multi-step paper-based assays using integrated layering of reagents. Lab on a Chip. 17:943-950. 2017
- In Vitro Selection of DNA Aptamers that Binds Geniposide. Molecules. 22:383-383. 2017
- Electrophoretic Concentration and Electrical Lysis of Bacteria in a Microfluidic Device Using a Nanoporous Membrane. Micromachines. 8:45-45. 2017
- RiboFACSeq: A new method for investigating metabolic and transport pathways in bacterial cells by combining a riboswitch-based sensor, fluorescence-activated cell sorting and next-generation sequencing. PLoS ONE. 12:e0188399-e0188399. 2017
- Integrating Deoxyribozymes into Colorimetric Sensing Platforms. Sensors. 16:2061-2061. 2016
- Colorimetric Detection of Bacteria Using Litmus Test. Journal of Visualized Experiments. 2016. 2016
- In vitro selection of RNA-cleaving DNAzymes for bacterial detection. ImmunoMethods. 106:66-75. 2016
- Programming a topologically constrained DNA nanostructure into a sensor. Nature Communications. 7:12074. 2016
- Topological DNA Assemblies Containing Identical or Fraternal Twins. ChemBioChem. 17:1142-1145. 2016
- Simple and ultrastable all-inclusive pullulan tablets for challenging bioassays. Chemical Science. 7:2342-2346. 2016
- Cover Picture: Target‐Induced and Equipment‐Free DNA Amplification with a Simple Paper Device (Angew. Chem. Int. Ed. 8/2016). Angewandte Chemie International Edition. 55:2603-2603. 2016
- Target‐Induced and Equipment‐Free DNA Amplification with a Simple Paper Device. Angewandte Chemie International Edition. 128:2759-2763. 2016
- Target‐Induced and Equipment‐Free DNA Amplification with a Simple Paper Device. Angewandte Chemie International Edition. 55:2709-2713. 2016
- Titelbild: Target‐Induced and Equipment‐Free DNA Amplification with a Simple Paper Device (Angew. Chem. 8/2016). Angewandte Chemie International Edition. 128:2649-2649. 2016
- A Catalytic DNA Activated by a Specific Strain of Bacterial Pathogen. Angewandte Chemie International Edition. 128:2477-2480. 2016
- A Catalytic DNA Activated by a Specific Strain of Bacterial Pathogen. Angewandte Chemie International Edition. 55:2431-2434. 2016
- Frozen vs Fresh Fecal Microbiota Transplantation and Clinical Resolution of Diarrhea in Patients With RecurrentClostridium difficileInfection. Journal of the American Medical Association (JAMA). 315:142-142. 2016
- A Quarter Century of In Vitro Selection. Journal of Molecular Evolution. 81:137-139. 2015
- Integrating graphene oxide, functional DNA and nucleic-acid-manipulating strategies for amplified biosensing. TrAC. Trends in analytical chemistry. 74:120-129. 2015
- Sequence Mutation and Structural Alteration Transform a Noncatalytic DNA Sequence into an Efficient RNA-Cleaving DNAzyme. Journal of Molecular Evolution. 81:245-253. 2015
- Printed Paper Sensors for Serum Lactate Dehydrogenase using Pullulan-Based Inks to Immobilize Reagents. Analytical Chemistry. 87:9288-9293. 2015
- Biosensing by Tandem Reactions of Structure Switching, Nucleolytic Digestion, and DNA Amplification of a DNA Assembly. Angewandte Chemie International Edition. 127:9773-9777. 2015
- Biosensing by Tandem Reactions of Structure Switching, Nucleolytic Digestion, and DNA Amplification of a DNA Assembly. Angewandte Chemie International Edition. 54:9637-9641. 2015
- Evolution of an Enzyme from a Noncatalytic Nucleic Acid Sequence. Scientific Reports. 5:11405. 2015
- Optimal DNA Templates for Rolling Circle Amplification Revealed by In Vitro Selection. Chemistry - A European Journal. 21:8069-8074. 2015
- Patterned Paper Sensors Printed with Long‐Chain DNA Aptamers. Chemistry - A European Journal. 21:7369-7373. 2015
- Determination of Mercury(II) by Fluorescence Using Deoxyribonucleic Acid Stabilized Silver Nanoclusters. Analytical Letters. 48:281-290. 2015
- Fluorescence Activation Imaging of Cytochrome c Released from Mitochondria Using Aptameric Nanosensor. Journal of the American Chemical Society. 137:982-989. 2015
- Highly Specific Recognition of Breast Tumors by an RNA-Cleaving Fluorogenic DNAzyme Probe. Analytical Chemistry. 87:569-577. 2015
- An Efficient Catalytic DNA that Cleaves L-RNA. PLoS ONE. 10:e0126402-e0126402. 2015
- A General Strategy to Create RNA Aptamer Sensors Using “Regulated” Graphene Oxide Adsorption. ACS Applied Materials & Interfaces. 6:21806-21812. 2014
- A Dual Reporter System for Detecting RNA Interactions in Bacterial Cells. ChemBioChem. 15:2703-2709. 2014
- Inside Cover: A Dual Reporter System for Detecting RNA Interactions in Bacterial Cells (ChemBioChem 18/2014). ChemBioChem. 15:2630-2630. 2014
- Back Cover: Translating Bacterial Detection by DNAzymes into a Litmus Test (Angew. Chem. Int. Ed. 47/2014). Angewandte Chemie International Edition. 53:12972-12972. 2014
- Rücktitelbild: Translating Bacterial Detection by DNAzymes into a Litmus Test (Angew. Chem. 47/2014). Angewandte Chemie International Edition. 126:13186-13186. 2014
- Translating Bacterial Detection by DNAzymes into a Litmus Test. Angewandte Chemie International Edition. 126:13013-13016. 2014
- Translating Bacterial Detection by DNAzymes into a Litmus Test. Angewandte Chemie International Edition. 53:12799-12802. 2014
- An inkjet-printed bioactive paper sensor that reports ATP through odour generation. The Analyst. 139:4775-4775. 2014
- Engineering interlocking DNA rings with weak physical interactions. Nature Communications. 5:4279. 2014
- A Graphene-Based Biosensing Platform Based on the Release of DNA Probes and Rolling Circle Amplification. ACS Nano. 8:5564-5573. 2014
- Pullulan Encapsulation of Labile Biomolecules to Give Stable Bioassay Tablets. Angewandte Chemie International Edition. 126:6269-6272. 2014
- Pullulan Encapsulation of Labile Biomolecules to Give Stable Bioassay Tablets. Angewandte Chemie International Edition. 53:6155-6158. 2014
- Fluorescence Analysis of the Properties of Structure-Switching DNA Aptamers Entrapped in Sol–Gel-Derived Silica Materials. Chemistry of Materials. 26:1896-1904. 2014
- Turning Tryptophanase into Odor‐Generating Biosensors. Angewandte Chemie International Edition. 126:2658-2660. 2014
- Turning Tryptophanase into Odor‐Generating Biosensors. Angewandte Chemie International Edition. 53:2620-2622. 2014
- A novel phosphorescence sensor for Co²⁺ ion based on Mn‐doped ZnS quantum dots. Luminescence. 29:151-157. 2014
- Lysozyme-stabilized gold nanoclusters as a novel fluorescence probe for cyanide recognition. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy. 121:77-80. 2014
- Arrest of Rolling Circle Amplification by Protein‐Binding DNA Aptamers. Chemistry - A European Journal. 20:2420-2424. 2014
- Therapeutic Peptides: New Arsenal Against Drug Resistant Pathogens. Current Pharmaceutical Design. 20:771-792. 2014
- Artificial Riboswitch Selection: A FACS-Based Approach. Methods in molecular biology (Clifton, N.J.). 1111:57-75. 2014
- Construction and Application of Riboswitch-Based Sensors That Detect Metabolites Within Bacterial Cells. Methods in molecular biology (Clifton, N.J.). 1103:177-197. 2014
- Examination of Bacterial Inhibition Using a Catalytic DNA. PLoS ONE. 9:e115640-e115640. 2014
- Evolving Wonder-RNAs in a Test Tube. Journal of Molecular Evolution. 77:197-198. 2013
- Exploring Intermolecular Interactions of a Substrate Binding Protein Using a Riboswitch-Based Sensor. Cell Chemical Biology. 20:1502-1512. 2013
- Phosphorescence detection of L-ascorbic acid with surface-attached N-acetyl-L-cysteine and L-cysteine Mn doped ZnS quantum dots. Talanta. 116:794-800. 2013
- A Sensitive DNA Enzyme-Based Fluorescent Assay for Bacterial Detection. Biomolecules. 3:563-577. 2013
- Quality Control Certification of RNA Aptamer‐Based Detection. ChemBioChem. 14:987-992. 2013
- Turning a Kinase Deoxyribozyme into a Sensor. Journal of the American Chemical Society. 135:7181-7186. 2013
- A Highly Efficient Molecular Cloning Platform that Utilises a Small Bacterial Toxin Gene. ChemBioChem. 14:733-738. 2013
- A novel far-visible and near-infrared pH probe for monitoring near-neutral physiological pH changes: imaging in live cells. Journal of Materials Chemistry B. 1:4281-4281. 2013
- Artificially Created Nucleic Acids and Peptides/Proteins in Chemical Biology. Journal of Nucleic Acids. 2013:1-2. 2013
- Assessing the Amount of Quadruplex Structures Present within G2-Tract Synthetic Random-Sequence DNA Libraries. PLoS ONE. 8:e64131-e64131. 2013
- Synthesis and evaluation of glucosamine-6-phosphate analogues as activators of glmS riboswitch. Tetrahedron. 68:9405-9412. 2012
- Stabilizing Structure-Switching Signaling RNA Aptamers by Entrapment in Sol–Gel Derived Materials for Solid-Phase Assays. Journal of the American Chemical Society. 134:10998-11005. 2012
- Multiplexed paper test strip for quantitative bacterial detection. Analytical and Bioanalytical Chemistry. 403:1567-1576. 2012
- Detection of Bacteria Using Fluorogenic DNAzymes. Journal of Visualized Experiments. 3961. 2012
- Developing Fluorogenic RNA-Cleaving DNAzymes for Biosensing Applications. Methods in molecular biology (Clifton, N.J.). 848:395-418. 2012
- Lighting Up RNA-Cleaving DNAzymes for Biosensing. Journal of Nucleic Acids. 2012:1-8. 2012
- Making Sense of Catalysis: The Potential of DNAzymes as Biosensors. RSC Biomolecular Sciences. 26:190-210. 2012
- Enhancing Sensitivity and Selectivity of Long-Period Grating Sensors using Structure-Switching Aptamers Bound to Gold-Doped Macroporous Silica Coatings. Analytical Chemistry. 83:7984-7991. 2011
- Advancements in Using Reporter DNAzymes for Identifying Pathogenic Bacteria at Speed and with Convenience. Future Microbiology. 6:973-976. 2011
- Fluorogenic DNAzyme Probes as Bacterial Indicators. Angewandte Chemie International Edition. 123:3835-3838. 2011
- Fluorogenic DNAzyme Probes as Bacterial Indicators. Angewandte Chemie International Edition. 50:3751-3754. 2011
- Controlling biotinylation of microgels and modeling streptavidin uptake. Colloid and Polymer Science. 289:659-666. 2011
- Modulation of DNA‐Modified Gold‐Nanoparticle Stability in Salt with Concatemeric Single‐Stranded DNAs for Colorimetric Bioassay Development. Chemistry - A European Journal. 17:2052-2056. 2011
- Functional Nucleic Acids as Molecular Recognition Elements for Small Organic and Biological Molecules. Current Organic Chemistry. 15:557-575. 2011
- Surface Immobilization of Structure-Switching DNA Aptamers on Macroporous Sol−Gel-Derived Films for Solid-Phase Biosensing Applications. Analytical Chemistry. 83:957-965. 2011
- Characterization of non-8–17 sequences uncovers structurally diverse RNA-cleaving deoxyribozymes. Molecular Omics. 7:2139-2139. 2011
- Decoding Toxicity. Journal of Biological Chemistry. 285:41627-41636. 2010
- A General Approach to the Construction of Structure‐Switching Reporters from RNA Aptamers. Angewandte Chemie International Edition. 49:7938-7942. 2010
- A General Approach to the Construction of Structure‐Switching Reporters from RNA Aptamers. Angewandte Chemie International Edition. 122:8110-8114. 2010
- Electrophoretic deposition of biomaterials. Journal of the Royal Society Interface. 7:S581-S613. 2010
- Probing the Function of Nucleotides in the Catalytic Cores of the 8−17 and 10−23 DNAzymes by Abasic Nucleotide and C3 Spacer Substitutions. Biochemistry. 49:7553-7562. 2010
- The Structural Diversity of Deoxyribozymes. Molecules. 15:6269-6284. 2010
- Influence of Cleavage Site on Global Folding of an RNA‐Cleaving DNAzyme. ChemBioChem. 11:1710-1719. 2010
- ChemInform Abstract: A Versatile Endoribonuclease Mimic Made of DNA: Characteristics and Applications of the 8—17 RNA‐Cleaving DNAzyme. ChemInform. 41:no-no. 2010
- A Complex RNA-Cleaving DNAzyme That Can Efficiently Cleave a Pyrimidine–Pyrimidine Junction. Journal of Molecular Biology. 400:689-701. 2010
- Using a Riboswitch Sensor to Examine Coenzyme B12 Metabolism and Transport in E. coli. Cell Chemical Biology. 17:756-765. 2010
- Photoluminescence model for a hybrid aptamer-GaAs optical biosensor. Journal of Applied Physics. 107. 2010
- A Versatile Endoribonuclease Mimic Made of DNA: Characteristics and Applications of the 8–17 RNA‐Cleaving DNAzyme. ChemBioChem. 11:866-879. 2010
- Characterization of an RNA-Cleaving Deoxyribozyme with Optimal Activity at pH 5. Biochemistry. 48:7383-7391. 2009
- A genotype-to-phenotype map of in vitro selected RNA-cleaving DNAzymes: implications for accessing the target phenotype. Nucleic Acids Research (NAR). 37:3545-3557. 2009
- Colorimetric Sensing by Using Allosteric‐DNAzyme‐Coupled Rolling Circle Amplification and a Peptide Nucleic Acid–Organic Dye Probe. Angewandte Chemie International Edition. 48:3512-3515. 2009
- Colorimetric Sensing by Using Allosteric‐DNAzyme‐Coupled Rolling Circle Amplification and a Peptide Nucleic Acid–Organic Dye Probe. Angewandte Chemie International Edition. 121:3564-3567. 2009
- Incorporation of an inducible nucleotide analog into DNA by DNA polymerases. Bioorganic and Medicinal Chemistry. 17:2859-2863. 2009
- Biologically Inspired Synthetic Enzymes Made from DNA. Cell Chemical Biology. 16:311-322. 2009
- Kinetics of signaling-DNA-aptamer–ATP binding. Physical Review E. 79:031906. 2009
- ChemInform Abstract: A Novel DNA‐Catalyzed Aldol Reaction.. ChemInform. 40:no-no. 2009
- DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides. Nucleic Acids Research (NAR). 37:413-420. 2009
- Identification of a Toxic Peptide through Bidirectional Expression of Small RNAs. ChemBioChem. 10:238-241. 2009
- Detection of DNA using bioactive paper strips. Chemical Communications. 0:6640-6640. 2009
- ChemInform Abstract: Design of Gold Nanoparticle‐Based Colorimetric Biosensing Assays. ChemInform. 39:no-no. 2008
- ChemInform Abstract: Investigation of DNA as a Catalyst for Henry Reaction in Water.. ChemInform. 39:no-no. 2008
- Paper-Based Bioassays Using Gold Nanoparticle Colorimetric Probes. Analytical Chemistry. 80:8431-8437. 2008
- ChemInform Abstract: Rolling Circle Amplification: Applications in Nanotechnology and Biodetection with Functional Nucleic Acids. ChemInform. 39:no-no. 2008
- Recent Progress in Nucleic Acid Aptamer-Based Biosensors and Bioassays. Sensors. 8:7050-7084. 2008
- Design of Gold Nanoparticle‐Based Colorimetric Biosensing Assays. ChemBioChem. 9:2363-2371. 2008
- A Novel DNA-Catalyzed Aldol Reaction. Synlett. 2008:2491-2494. 2008
- A FACS‐Based Approach to Engineering Artificial Riboswitches. ChemBioChem. 9:1906-1911. 2008
- Rolling Circle Amplification: Applications in Nanotechnology and Biodetection with Functional Nucleic Acids. Angewandte Chemie International Edition. 47:6330-6337. 2008
- Rolling‐Circle‐Amplifikation: Anwendungen in der Nanotechnologie und in der Biodetektion mit funktionellen Nucleinsäuren. Angewandte Chemie International Edition. 120:6428-6436. 2008
- In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine–pyrimidine junctions. Nucleic Acids Research (NAR). 36:4768-4777. 2008
- Enzymatic Cleavage of Nucleic Acids on Gold Nanoparticles: A Generic Platform for Facile Colorimetric Biosensors. Small. 4:810-816. 2008
- Introduction: Chemical Biology meets Systems Biology / Introduction : Convergence de la biologie chimique et de la biologie systémique. Biochemistry and Cell Biology. 86:vii-viii. 2008
- DNA Aptamer Folding on Gold Nanoparticles: From Colloid Chemistry to Biosensors. Journal of the American Chemical Society. 130:3610-3618. 2008
- Microgel-Based Inks for Paper-Supported Biosensing Applications. Biomacromolecules. 9:935-941. 2008
- Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme. Nucleic Acids Research (NAR). 36:1472-1481. 2008
- A Deoxyribozyme with a Novel Guanine Quartet-Helix Pseudoknot Structure. Journal of Molecular Biology. 375:960-968. 2008
- Investigation of DNA as a catalyst for Henry reaction in water. Chemical Communications. 0:3792-3792. 2008
- Periodic Assembly of Nanospecies on Repetitive DNA Sequences Generated on Gold Nanoparticles by Rolling Circle Amplification. Methods in molecular biology (Clifton, N.J.). 474:79-90. 2008
- Understanding DNA-based catalysis one molecule at a time. Nature Chemical Biology. 3:753-754. 2007
- Isolation of DNA Aptamers for CDP‐Ribitol Synthase, and Characterization of Their Inhibitory and Structural Properties. ChemBioChem. 8:2052-2057. 2007
- Simple Fluorescent Sensors Engineered with Catalytic DNA ‘MgZ’ Based on a Non-Classic Allosteric Design. PLoS ONE. 2:e1224-e1224. 2007
- Enzymatic Incorporation of 2-Amino-6-Vinylpurine Derivative. Nucleic acids symposium series (2004). 51:357-358. 2007
- Highly Stabilized Nucleotide‐Capped Small Gold Nanoparticles with Tunable Size. Advanced Materials. 19:1766-1771. 2007
- Aptamers and Small Molecules Play Tug of War. Cell Chemical Biology. 14:736-738. 2007
- Simple and Rapid Colorimetric Biosensors Based on DNA Aptamer and Noncrosslinking Gold Nanoparticle Aggregation. ChemBioChem. 8:727-731. 2007
- Entrapment of Fluorescence Signaling DNA Enzymes in Sol−Gel-Derived Materials for Metal Ion Sensing. Analytical Chemistry. 79:3494-3503. 2007
- Characterization of pH3DZ1 — An RNA-cleaving deoxyribozyme with optimal activity at pH 3. Canadian Journal of Chemistry. 85:261-273. 2007
- Multiple Occurrences of an Efficient Self-Phosphorylating Deoxyribozyme Motif. Biochemistry. 46:2198-2204. 2007
- A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria. Nucleic Acids Research (NAR). 35:e46-e46. 2007
- Adsorption and Covalent Coupling of ATP-Binding DNA Aptamers onto Cellulose. Langmuir. 23:1300-1302. 2007
- Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates. Nucleic Acids Research (NAR). 35:401-405. 2007
- Enzymatic manipulations of DNA oligonucleotides on microgel: towards development of DNA–microgel bioassays. Chemical Communications. 0:4459-4459. 2007
- Label-Free Fiber Optic Biosensors With Enhanced Sensitivity. IEEE Journal of Selected Topics in Quantum Electronics. 13:1691-1696. 2007
- Optimization of Cladding-Structure-Modified Long-Period-Grating Refractive-Index Sensors. Journal of Lightwave Technology. 25:372-380. 2007
- Simple and rapid colorimetric enzyme sensing assays using non-crosslinking gold nanoparticle aggregation. Chemical Communications. 0:3729-3729. 2007
- Evolution of High-Branching Deoxyribozymes from a Catalytic DNA with a Three-Way Junction. Cell Chemical Biology. 13:1061-1069. 2006
- Catalysis and Rational Engineering of trans‐Acting pH6DZ1, an RNA‐Cleaving and Fluorescence‐Signaling Deoxyribozyme with a Four‐Way Junction Structure. ChemBioChem. 7:1343-1348. 2006
- Small‐Molecule Screening Made Simple for a Difficult Target with a Signaling Nucleic Acid Aptamer that Reports on Deaminase Activity. Angewandte Chemie International Edition. 118:5776-5780. 2006
- Small‐Molecule Screening Made Simple for a Difficult Target with a Signaling Nucleic Acid Aptamer that Reports on Deaminase Activity. Angewandte Chemie International Edition. 45:5648-5652. 2006
- Long-period grating refractive index sensor with a modified cladding structure for large operational range and high sensitivity. Applied Optics. 45:6142-6142. 2006
- Nucleic acid aptamers and enzymes as sensors. Current Opinion in Chemical Biology. 10:272-281. 2006
- Solid‐Phase Enzyme Activity Assay Utilizing an Entrapped Fluorescence‐Signaling DNA Aptamer. Angewandte Chemie International Edition. 118:3373-3377. 2006
- Solid‐Phase Enzyme Activity Assay Utilizing an Entrapped Fluorescence‐Signaling DNA Aptamer. Angewandte Chemie International Edition. 45:3295-3299. 2006
- Characterization of long RNA-cleaving deoxyribozymes with short catalytic cores: the effect of excess sequence elements on the outcome of in vitro selection. Nucleic Acids Research (NAR). 34:2445-2454. 2006
- DNA Polymerization on Gold Nanoparticles through Rolling Circle Amplification: Towards Novel Scaffolds for Three‐Dimensional Periodic Nanoassemblies. Angewandte Chemie International Edition. 118:2469-2473. 2006
- DNA Polymerization on Gold Nanoparticles through Rolling Circle Amplification: Towards Novel Scaffolds for Three‐Dimensional Periodic Nanoassemblies. Angewandte Chemie International Edition. 45:2409-2413. 2006
- Revitalization of Six Abandoned Catalytic DNA Species Reveals a Common Three-way Junction Framework and Diverse Catalytic Cores. Journal of Molecular Biology. 357:748-754. 2006
- Phosphoester-transfer mechanism of an RNA-cleaving acidic deoxyribozyme revealed by radioactivity tracking and enzymatic digestion. Chemical Communications. 0:2359-2359. 2006
- Quenching of Fluorophore-Labeled DNA Oligonucleotides by Divalent Metal Ions: Implications for Selection, Design, and Applications of Signaling Aptamers and Signaling Deoxyribozymes. Journal of the American Chemical Society. 128:780-790. 2006
- Wrapping single-walled carbon nanotubes with long single-stranded DNA molecules produced by rolling circle amplification. Chemical Communications. 0:3582-3582. 2006
- Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme. Nucleic Acids Research (NAR). 33:7164-7175. 2005
- Aptamers with fluorescence-signaling properties. ImmunoMethods. 37:16-25. 2005
- Characterization of a fluorescence-signaling and RNA-cleaving deoxyribozyme. Nucleic acids symposium series (2004). 49:55-56. 2005
- Characterizing the Secondary Structure and Identifying Functionally Essential Nucleotides of pH6DZ1, a Fluorescence-Signaling and RNA-Cleaving Deoxyribozyme. Biochemistry. 44:12066-12076. 2005
- A DNA–Protein Nanoengine for “On‐Demand” Release and Precise Delivery of Molecules. Angewandte Chemie International Edition. 117:5600-5603. 2005
- A DNA–Protein Nanoengine for “On‐Demand” Release and Precise Delivery of Molecules. Angewandte Chemie International Edition. 44:5464-5467. 2005
- Complexation of well-controlled low-molecular weight polyelectrolytes with antisense oligonucleotides. Colloid and Polymer Science. 283:1197-1205. 2005
- Diverse Evolutionary Trajectories Characterize a Community of RNA-Cleaving Deoxyribozymes: A Case Study into the Population Dynamics of In Vitro Selection. Journal of Molecular Evolution. 61:192-206. 2005
- Entrapment of Fluorescent Signaling DNA Aptamers in Sol−Gel-Derived Silica. Analytical Chemistry. 77:4300-4307. 2005
- Structure-switching allosteric deoxyribozymes. Analytica Chimica Acta. 534:41-51. 2005
- Secondary-Structure Characterization of Two Proficient Kinase Deoxyribozymes. Biochemistry. 44:3765-3774. 2005
- Tau protein binds single‐stranded DNA sequence specifically – the proof obtained in vitro with non‐equilibrium capillary electrophoresis of equilibrium mixtures. FEBS Letters. 579:1371-1375. 2005
- In Vitro Selection of Structure‐Switching Signaling Aptamers. Angewandte Chemie International Edition. 117:1085-1089. 2005
- In Vitro Selection of Structure‐Switching Signaling Aptamers. Angewandte Chemie International Edition. 44:1061-1065. 2005
- Synthesis and characterization of topologically linked single-stranded DNA rings. Bioorganic Chemistry. 32:582-598. 2004
- Signaling Aptamers for Monitoring Enzymatic Activity and for Inhibitor Screening. ChemBioChem. 5:1139-1144. 2004
- DNAzymes: From Creation In Vitro to Application In Vivo. Current Pharmaceutical Biotechnology. 5:321-336. 2004
- Tracing Sequence Diversity Change of RNA-Cleaving Deoxyribozymes under Increasing Selection Pressure during in Vitro Selection. Biochemistry. 43:9695-9707. 2004
- Structure‐Switching Signaling Aptamers: Transducing Molecular Recognition into Fluorescence Signaling. ChemInform. 35:no-no. 2004
- Structure-switching signaling aptamers: transducing molecular recognition into fluorescence signaling.. Chemistry - A European Journal. 10:1868-1876. 2004
- Structure‐Switching Signaling Aptamers: Transducing Molecular Recognition into Fluorescence Signaling. Chemistry - A European Journal. 10:1868-1876. 2004
- Ligating DNA with DNA. Journal of the American Chemical Society. 126:3454-3460. 2004
- Dinucleotide Junction Cleavage Versatility of 8-17 Deoxyribozyme. Cell Chemical Biology. 11:57-67. 2004
- Engineering DNA aptamers and DNA enzymes with fluorescence-signaling properties. Pure and Applied Chemistry. 76:1547-1561. 2004
- Assemblage of Signaling DNA Enzymes with Intriguing Metal-Ion Specificities and pH Dependences. Journal of the American Chemical Society. 125:7539-7545. 2003
- Structure-Switching Signaling Aptamers. Journal of the American Chemical Society. 125:4771-4778. 2003
- Affinity Analysis of a Protein−Aptamer Complex Using Nonequilibrium Capillary Electrophoresis of Equilibrium Mixtures. Analytical Chemistry. 75:1382-1386. 2003
- An Efficient RNA-Cleaving DNA Enzyme that Synchronizes Catalysis with Fluorescence Signaling. Journal of the American Chemical Society. 125:412-420. 2003
- Making AppDNA using T4 DNA ligase. Bioorganic Chemistry. 30:332-349. 2002
- Tripartite molecular beacons. Nucleic Acids Research (NAR). 30:94e-94. 2002
- Sequence Diversity, Metal Specificity, and Catalytic Proficiency of Metal-Dependent Phosphorylating DNA Enzymes. Cell Chemical Biology. 9:507-517. 2002
- In Vitro Selection of Kinase and Ligase Deoxyribozymes. ImmunoMethods. 23:179-190. 2001
- Capping DNA with DNA. Biochemistry. 39:3106-3114. 2000
- In vitro selection of deoxyribozymes with DNA capping activity. Nucleic acids symposium series (2004). 42:237-238. 1999
- Deoxyribozymes: New players in the ancient game of biocatalysis. Current Opinion in Structural Biology. 9:315-323. 1999
- Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group. Journal of the American Chemical Society. 121:5364-5372. 1999
- Phosphorylating DNA with DNA. Proceedings of the National Academy of Sciences of the United States of America. 96:2746-2751. 1999
- DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex. Cell Chemical Biology. 5:505-517. 1998
- The modus operandi of a DNA enzyme: enhancement of substrate basicity. Cell Chemical Biology. 5:1-12. 1998
- Toward an Efficient DNAzyme. Biochemistry. 36:5589-5599. 1997
- A catalytic DNA for porphyrin metallation. Nature Structural & Molecular Biology. 3:743-747. 1996
- Recognition of Anionic Porphyrins by DNA Aptamers. Biochemistry. 35:6911-6922. 1996
- Colorimetric Detection of Bacteria Using Litmus Test. Journal of Visualized Experiments.
- Detection of Bacteria Using Fluorogenic DNAzymes. Journal of Visualized Experiments.
- Fighting Mutations with Mutations: Evolutionarily Adapting a DNA Aptamer for High‐Affinity Recognition of Mutated Spike Proteins of SARS‐CoV‐2. Angewandte Chemie International Edition.
- Functional Nucleic Acids as Bacterial Biosensors: A Focus on Clostridioides difficile Infection. Analysis & Sensing.
- Higher Affinity Enables More Accurate Detection of SARS‐CoV‐2 in Human Saliva Using Aptamer‐Based Litmus Test. Angewandte Chemie International Edition.
preprints
- Comprehensive Fluorescence Profiles of Contamination-prone Foods Applied to the Design of Microcontact-printed in situ Functional Oligonucleotide Sensors 2023
- Investigation of Discordant SARS-CoV-2 RT-PCR Results Using Neat Saliva 2021