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Lyndon array construction during Burrows–Wheeler...
Journal article

Lyndon array construction during Burrows–Wheeler inversion

Abstract

In this paper we present an algorithm to compute the Lyndon array of a string T of length n as a byproduct of the inversion of the Burrows–Wheeler transform of T. Our algorithm runs in linear time using only a stack in addition to the data structures used for Burrows–Wheeler inversion. We compare our algorithm with two other linear-time algorithms for Lyndon array construction and show that computing the Burrows–Wheeler transform and then constructing the Lyndon array is competitive compared to the known approaches. We also propose a new balanced parenthesis representation for the Lyndon array that uses 2 n + o ( n ) bits of space and supports constant time access. This representation can be built in linear time using O ( n ) words of space, or in O ( n log ⁡ n / log ⁡ log ⁡ n ) time using asymptotically the same space as T.

Authors

Louza FA; Smyth WF; Manzini G; Telles GP

Journal

Journal of Discrete Algorithms, Vol. 50, , pp. 2–9

Publisher

Elsevier

Publication Date

May 1, 2018

DOI

10.1016/j.jda.2018.08.001

ISSN

1570-8667

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